Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AAK1	22848	broad.mit.edu	37	2	69759377	69759377	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48619849	48619849	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67257450	67257450	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66891114	66891114	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66891114	66891114	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66980377	66980377	+	Intron	DEL	A	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67014038	67014038	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67031811	67031811	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66980377	66980377	+	Intron	DEL	A	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67014038	67014038	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67031811	67031811	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48118011	48118011	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48174499	48174499	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48118011	48118011	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48174499	48174499	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16138552	16138552	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16138552	16138552	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48741535	48741535	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48741535	48741535	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17448584	17448584	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17464965	17464965	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17448584	17448584	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17464965	17464965	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21998516	21998516	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD4	79777	broad.mit.edu	37	17	43215142	43215142	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD4	79777	broad.mit.edu	37	17	43215142	43215142	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31348430	31348430	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31348430	31348430	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61555354	61555354	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55070116	55070116	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP5	54	broad.mit.edu	37	19	11685764	11685764	+	3'UTR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132036133	132036133	+	5'Flank	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20636757	20636757	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20636757	20636757	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20494626	20494626	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG1	71	broad.mit.edu	37	17	79478180	79478180	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236889278	236889278	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39142377	39142377	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39142377	39142377	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106349672	106349672	+	RNA	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107122205	107122205	+	Splice_Site	SNP	C	G	G	rs113057405	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107170193	107170193	+	RNA	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107122205	107122205	+	Splice_Site	SNP	C	G	G	rs113057405	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107170193	107170193	+	RNA	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33577295	33577295	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5190105	5190105	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5190105	5190105	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77401715	77401715	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77401715	77401715	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43770516	43770516	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43856734	43856734	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43770516	43770516	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43856734	43856734	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73149304	73149304	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73149304	73149304	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79067005	79067005	+	Missense_Mutation	SNP	T	C	C	rs151217691		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84611402	84611402	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84683293	84683294	+	Splice_Site	DNP	GG	TT	TT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84611402	84611402	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84683293	84683294	+	Splice_Site	DNP	GG	TT	TT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45717379	45717379	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45742956	45742956	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45717379	45717379	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45742956	45742956	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690926	7690926	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690926	7690926	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7727285	7727285	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111878333	111878333	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111878333	111878333	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100210522	100210522	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100210522	100210522	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFTPH	54812	broad.mit.edu	37	2	64808353	64808353	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGK	55750	broad.mit.edu	37	7	141296228	141296228	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148459426	148459426	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148459426	148459426	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGT	183	broad.mit.edu	37	1	230845985	230845985	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109664882	109664883	+	Intron	DNP	CC	AA	AA			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109667832	109667832	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109667832	109667832	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62292744	62292744	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIG1	51390	broad.mit.edu	37	6	143458135	143458135	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77876759	77876759	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77876759	77876759	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96881727	96881727	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C4	1109	broad.mit.edu	37	10	5239002	5239002	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C4	1109	broad.mit.edu	37	10	5239002	5239002	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243788254	243788254	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58256303	58256303	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396791	38396791	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396791	38396791	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG6	29929	broad.mit.edu	37	1	63885123	63885123	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG6	29929	broad.mit.edu	37	1	63885123	63885123	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29519878	29519878	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29519878	29519878	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPPL2	251	broad.mit.edu	37	2	233271579	233271579	+	5'UTR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPPL2	251	broad.mit.edu	37	2	233271579	233271579	+	5'UTR	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CL	259173	broad.mit.edu	37	3	46718332	46718332	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CL	259173	broad.mit.edu	37	3	46718332	46718332	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118081327	118081327	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMIGO2	347902	broad.mit.edu	37	12	47471976	47471976	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115220842	115220842	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115220842	115220842	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38534172	38534172	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38534172	38534172	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77257782	77257782	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL5	253935	broad.mit.edu	37	11	101765536	101765536	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL5	253935	broad.mit.edu	37	11	101765536	101765536	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61874084	61874084	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	62444267	62444267	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61874084	61874084	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	62444267	62444267	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54403587	54403587	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133331681	133331681	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133331681	133331681	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95647320	95647320	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95647320	95647320	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD28	23243	broad.mit.edu	37	3	15762737	15762737	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS3	124401	broad.mit.edu	37	16	4747327	4747327	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26621324	26621324	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26621324	26621324	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101295492	101295492	+	5'UTR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101295492	101295492	+	5'UTR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22283597	22283597	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22283597	22283597	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118750	165118750	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118750	165118750	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69304605	69304605	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69304605	69304605	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC2	314	broad.mit.edu	37	17	40996773	40996773	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC2	314	broad.mit.edu	37	17	40996773	40996773	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77425192	77425192	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APH1B	83464	broad.mit.edu	37	15	63579582	63579582	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APTX	54840	broad.mit.edu	37	9	32988051	32988051	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP9	366	broad.mit.edu	37	15	58458996	58458996	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP9	366	broad.mit.edu	37	15	58458996	58458996	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35155027	35155027	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36149346	36149346	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32928496	32928496	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32928496	32928496	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86915608	86915608	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP27	201176	broad.mit.edu	37	17	43481385	43481385	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130218448	130218448	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130218650	130218650	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130218448	130218448	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130218650	130218650	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	17961112	17961112	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135829672	135829672	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135829672	135829672	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL4D	379	broad.mit.edu	37	17	41477012	41477012	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL4D	379	broad.mit.edu	37	17	41477012	41477012	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23292330	23292330	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23270366	23270366	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23292330	23292330	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28260243	28260243	+	Splice_Site	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35729467	35729467	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35729467	35729467	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSB	411	broad.mit.edu	37	5	78135202	78135202	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSB	411	broad.mit.edu	37	5	78135202	78135202	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH2	56624	broad.mit.edu	37	10	52005145	52005145	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH2	56624	broad.mit.edu	37	10	52005145	52005145	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB2	51676	broad.mit.edu	37	14	94413886	94413886	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB2	51676	broad.mit.edu	37	14	94413886	94413886	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1743294	1743294	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1743294	1743294	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176845597	176845597	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176903498	176903498	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176845597	176845597	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176903498	176903498	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	26032686	26032686	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117067548	117067548	+	5'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117067548	117067548	+	5'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3917687	3917687	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3917687	3917687	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32087669	32087669	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32087669	32087669	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96777950	96777950	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96777950	96777950	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG7	10533	broad.mit.edu	37	3	11382132	11382132	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG7	10533	broad.mit.edu	37	3	11382132	11382132	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108188041	108188041	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160140884	160140884	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119504691	119504691	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119512496	119512496	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A3	489	broad.mit.edu	37	17	3844532	3844532	+	Missense_Mutation	SNP	G	C	C	rs140617781		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPBD4	89978	broad.mit.edu	37	15	35693047	35693047	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPBD4	89978	broad.mit.edu	37	15	35693047	35693047	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117040877	117040877	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117040877	117040877	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3529820	3529820	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3529820	3529820	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28378139	28378139	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACE2	25825	broad.mit.edu	37	21	42598306	42598306	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACE2	25825	broad.mit.edu	37	21	42598306	42598306	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70071247	70071247	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70071247	70071247	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BASP1	10409	broad.mit.edu	37	5	17275998	17275998	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BASP1	10409	broad.mit.edu	37	5	17275998	17275998	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33392628	33392628	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52645564	52645564	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L1	598	broad.mit.edu	37	20	30253651	30253651	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L1	598	broad.mit.edu	37	20	30253651	30253651	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL6B	255877	broad.mit.edu	37	17	6928575	6928575	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL6B	255877	broad.mit.edu	37	17	6928575	6928575	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL7C	9274	broad.mit.edu	37	16	30899222	30899223	+	Frame_Shift_Ins	INS	-	G	G	rs150838242		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHMT	635	broad.mit.edu	37	5	78426781	78426781	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHMT	635	broad.mit.edu	37	5	78426781	78426781	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32712888	32712888	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32712888	32712888	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34091581	34091581	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34091581	34091581	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26267807	26267807	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26267843	26267843	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26267807	26267807	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26267843	26267843	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15375583	15375583	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15375583	15375583	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRP44	25874	broad.mit.edu	37	1	167906269	167906269	+	5'Flank	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26431814	26431814	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26431814	26431814	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL2	56244	broad.mit.edu	37	6	32372644	32372644	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL2	56244	broad.mit.edu	37	6	32372644	32372644	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf120	399814	broad.mit.edu	37	10	124457832	124457832	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf26	54838	broad.mit.edu	37	10	104557952	104557952	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf26	54838	broad.mit.edu	37	10	104557952	104557952	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf47	254427	broad.mit.edu	37	10	11911910	11911910	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105903388	105903388	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105951929	105951929	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105903388	105903388	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105951929	105951929	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33628193	33628193	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf48	79081	broad.mit.edu	37	11	62430634	62430634	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf48	79081	broad.mit.edu	37	11	62430634	62430634	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122827172	122827172	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27078802	27078802	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27081463	27081463	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27081513	27081513	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27078802	27078802	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40040706	40040706	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40041818	40041818	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40040706	40040706	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74825598	74825598	+	3'UTR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74825598	74825598	+	3'UTR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf169	79697	broad.mit.edu	37	14	73959323	73959323	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf169	79697	broad.mit.edu	37	14	73959323	73959323	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf26	161502	broad.mit.edu	37	15	81428997	81428997	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf26	161502	broad.mit.edu	37	15	81428997	81428997	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921525	24921525	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921525	24921525	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90144435	90144435	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332548	100332548	+	RNA	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332548	100332548	+	RNA	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf70	80262	broad.mit.edu	37	16	67178769	67178769	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf101	79701	broad.mit.edu	37	17	80367167	80367167	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf101	79701	broad.mit.edu	37	17	80367167	80367167	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42239190	42239190	+	Intron	SNP	G	A	A	rs145047676	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42239190	42239190	+	Intron	SNP	G	A	A	rs145047676	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645351	13645351	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645351	13645351	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30554589	30554589	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30554589	30554589	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf55	148137	broad.mit.edu	37	19	36250456	36250456	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44235832	44235832	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44235832	44235832	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QL2	165257	broad.mit.edu	37	2	119914666	119914666	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QL2	165257	broad.mit.edu	37	2	119914666	119914666	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111494316	111494316	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111492626	111492626	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111494316	111494316	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf106	55765	broad.mit.edu	37	1	200880721	200880721	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179416882	179416882	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf156	92342	broad.mit.edu	37	1	169761944	169761944	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf156	92342	broad.mit.edu	37	1	169761944	169761944	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57185334	57185334	+	3'UTR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57185334	57185334	+	3'UTR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf57	84284	broad.mit.edu	37	1	233086548	233086548	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf151	140893	broad.mit.edu	37	20	60987502	60987502	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31661396	31661396	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31661396	31661396	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31680430	31680430	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf194	25943	broad.mit.edu	37	20	3340199	3340199	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf96	140680	broad.mit.edu	37	20	258068	258068	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf96	140680	broad.mit.edu	37	20	258068	258068	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73825446	73825446	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73825446	73825446	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26676417	26676417	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26676417	26676417	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf48	348738	broad.mit.edu	37	2	10350487	10350487	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf48	348738	broad.mit.edu	37	2	10350487	10350487	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf66	401027	broad.mit.edu	37	2	197674127	197674127	+	5'UTR	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf66	401027	broad.mit.edu	37	2	197674127	197674127	+	5'UTR	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6686481	6686481	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf65	646600	broad.mit.edu	37	3	185431229	185431229	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf65	646600	broad.mit.edu	37	3	185431229	185431229	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf67	200844	broad.mit.edu	37	3	58923422	58923422	+	5'UTR	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113461166	113461166	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159928877	159928877	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159928877	159928877	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54025173	54025173	+	Missense_Mutation	SNP	T	A	A	rs142613357	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54025173	54025173	+	Missense_Mutation	SNP	T	A	A	rs142613357	byFrequency	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97597755	97597755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97597755	97597755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74072525	74072525	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74072525	74072525	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151894422	151894422	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151894422	151894422	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf57	136288	broad.mit.edu	37	7	48086245	48086245	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57411795	57411795	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57411795	57411795	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27891171	27891171	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27891171	27891171	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf68	55064	broad.mit.edu	37	9	4625266	4625266	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49711134	49711134	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24487906	24487906	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13445409	13445409	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2602685	2602685	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2675528	2675528	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2602685	2602685	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2714753	2714753	+	Intron	SNP	G	T	T	rs41276704	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181548245	181548245	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40052575	40052575	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122261550	122261550	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALHM1	255022	broad.mit.edu	37	10	105218247	105218247	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3785873	3785873	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CANT1	124583	broad.mit.edu	37	17	76993153	76993153	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44140984	44140984	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44140984	44140984	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN7	23473	broad.mit.edu	37	3	15288300	15288300	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN7	23473	broad.mit.edu	37	3	15288300	15288300	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230903521	230903521	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230927574	230927574	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35910343	35910343	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43924352	43924353	+	Intron	DEL	TA	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43927759	43927759	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBARA1	10367	broad.mit.edu	37	10	74311183	74311183	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBARA1	10367	broad.mit.edu	37	10	74311183	74311183	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105378032	105378032	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2B	387707	broad.mit.edu	37	10	97779094	97779094	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2B	387707	broad.mit.edu	37	10	97779094	97779094	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92887757	92887757	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92887876	92887876	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92887757	92887757	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106125438	106125438	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106130883	106130883	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106130883	106130883	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC155	147872	broad.mit.edu	37	19	49912885	49912885	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC25	55246	broad.mit.edu	37	8	27614179	27614179	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC25	55246	broad.mit.edu	37	8	27614179	27614179	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC43	124808	broad.mit.edu	37	17	42761276	42761276	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC64	92558	broad.mit.edu	37	12	120510566	120510566	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC64	92558	broad.mit.edu	37	12	120510566	120510566	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC67	159989	broad.mit.edu	37	11	93118676	93118676	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC67	159989	broad.mit.edu	37	11	93118676	93118676	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCK	885	broad.mit.edu	37	3	42299485	42299485	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCK	885	broad.mit.edu	37	3	42299485	42299485	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33281436	33281436	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33281436	33281436	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74466546	74466546	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71060027	71060027	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71060027	71060027	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300C	10871	broad.mit.edu	37	17	72540857	72540857	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300C	10871	broad.mit.edu	37	17	72540857	72540857	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35218483	35218483	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35222804	35222804	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157811523	157811523	+	5'UTR	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157811523	157811523	+	5'UTR	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111317000	111317000	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25A	993	broad.mit.edu	37	3	48207217	48207217	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25A	993	broad.mit.edu	37	3	48207217	48207217	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103412024	103412024	+	Silent	SNP	G	C	C	rs141924737		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC5L	988	broad.mit.edu	37	6	44371547	44371547	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC5L	988	broad.mit.edu	37	6	44371547	44371547	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193205522	193205522	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981591	64981591	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981591	64981591	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21760456	21760456	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21882749	21882749	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21882749	21882749	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64239490	64239490	+	5'UTR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64239490	64239490	+	5'UTR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73376966	73376966	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66426327	66426327	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66426327	66426327	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31294119	31294119	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26890138	26890138	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26903715	26903715	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85968522	85968522	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85968522	85968522	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK11B	984	broad.mit.edu	37	1	1586707	1586707	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123184938	123184938	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123184938	123184938	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92300893	92300893	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92300893	92300893	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDRT15P	94158	broad.mit.edu	37	17	13928500	13928500	+	RNA	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80638575	80638575	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80638575	80638575	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123920102	123920102	+	Silent	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123920102	123920102	+	Silent	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95263113	95263113	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95263188	95263188	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95263227	95263227	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95263113	95263113	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95263188	95263188	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERK	64781	broad.mit.edu	37	22	47115947	47115947	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES4	51716	broad.mit.edu	37	16	55801155	55801155	+	Intron	SNP	C	A	A	rs146659371	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196744097	196744097	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196749110	196749110	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196744097	196744097	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196749110	196749110	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR5	81494	broad.mit.edu	37	1	196971714	196971714	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR5	81494	broad.mit.edu	37	1	196971714	196971714	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117242935	117242935	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117242935	117242935	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151497319	151497319	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40125887	40125887	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53308301	53308301	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHPF2	54480	broad.mit.edu	37	7	150932245	150932245	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHPF2	54480	broad.mit.edu	37	7	150932245	150932245	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHPT1	56994	broad.mit.edu	37	12	102122825	102122825	+	3'UTR	DEL	A	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHPT1	56994	broad.mit.edu	37	12	102122825	102122825	+	3'UTR	DEL	A	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46776329	46776329	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170601384	170601384	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11879714	11879714	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC7A	64581	broad.mit.edu	37	12	10280406	10280406	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95677189	95677189	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140277665	140277665	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140281113	140281113	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140277665	140277665	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140281113	140281113	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108686656	108686656	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108686656	108686656	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108710200	108710200	+	Intron	SNP	G	T	T	rs139884458	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150912021	150912021	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150912021	150912021	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87682961	87682961	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58580244	58580244	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58580244	58580244	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41419200	41419200	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41419200	41419200	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205033700	205033701	+	Intron	DNP	CC	AT	AT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205033700	205033701	+	Intron	DNP	CC	AT	AT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74334437	74334437	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74334437	74334437	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99690425	99690425	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1427542	1427542	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1427542	1427542	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33133822	33133822	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33133822	33133822	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101818644	101818644	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101818644	101818644	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61944620	61944620	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55923900	55923900	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55923900	55923900	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139734379	139734380	+	Intron	DNP	GG	TT	TT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7563786	7563786	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7561460	7561460	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48376677	48376677	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48376677	48376677	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189872536	189872536	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110827815	110827815	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227964453	227964453	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227973846	227973846	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227964453	227964453	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227973846	227973846	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10114434	10114434	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10114434	10114434	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130285632	130285633	+	Frame_Shift_Ins	INS	-	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130287011	130287011	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130287011	130287011	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD2	51122	broad.mit.edu	37	3	149470067	149470068	+	Frame_Shift_Ins	INS	-	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX15	1355	broad.mit.edu	37	10	101473134	101473134	+	3'UTR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX15	1355	broad.mit.edu	37	10	101473134	101473134	+	3'UTR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7A2L	9167	broad.mit.edu	37	2	42578436	42578436	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7A2L	9167	broad.mit.edu	37	2	42578436	42578436	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB2	1361	broad.mit.edu	37	13	46658490	46658490	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB2	1361	broad.mit.edu	37	13	46658490	46658490	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83224462	83224462	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145623236	145623236	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145623236	145623236	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125622260	125622260	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207867885	207867885	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207867885	207867885	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207751639	207751639	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197297545	197297545	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197297545	197297545	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137586170	137586170	+	Splice_Site	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16948470	16948470	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL2	114819	broad.mit.edu	37	1	16810776	16810776	+	RNA	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRY2	1408	broad.mit.edu	37	11	45891801	45891801	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRY2	1408	broad.mit.edu	37	11	45891801	45891801	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37319522	37319522	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2855548	2855548	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2857690	2857690	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3165798	3165798	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2855548	2855548	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2857690	2857690	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34554714	34554714	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34554714	34554714	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113275890	113275890	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113651001	113651001	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113842040	113842040	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113275890	113275890	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113275989	113275989	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113651001	113651001	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113842040	113842040	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47B1	643311	broad.mit.edu	37	X	120007954	120007954	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47B1	643311	broad.mit.edu	37	X	120007954	120007954	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE1	64693	broad.mit.edu	37	18	19996562	19996562	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80772069	80772069	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80875162	80875162	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68535192	68535192	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68535192	68535192	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSE	1510	broad.mit.edu	37	1	206319094	206319094	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSZ	1522	broad.mit.edu	37	20	57571564	57571564	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117424261	117424261	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117424274	117424274	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16960851	16960851	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17152665	17152665	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16960851	16960851	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35327986	35327986	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107207336	107207336	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107207336	107207336	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL9	4283	broad.mit.edu	37	4	76927399	76927399	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL9	4283	broad.mit.edu	37	4	76927399	76927399	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR2P1	3580	broad.mit.edu	37	2	218925700	218925700	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR2P1	3580	broad.mit.edu	37	2	218925700	218925700	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR6	10663	broad.mit.edu	37	3	45988293	45988293	+	Missense_Mutation	SNP	G	A	A	rs151224196	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf30	645090	broad.mit.edu	37	X	36393160	36393160	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf30	645090	broad.mit.edu	37	X	36393160	36393160	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf57	55086	broad.mit.edu	37	X	105891406	105891406	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	23000107	23000107	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	23000107	23000107	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A1	1543	broad.mit.edu	37	15	75014042	75014042	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A1	1543	broad.mit.edu	37	15	75014042	75014042	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1B1	1545	broad.mit.edu	37	2	38297933	38297933	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1B1	1545	broad.mit.edu	37	2	38297933	38297933	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94834752	94834752	+	Missense_Mutation	SNP	G	T	T	rs149343022	byFrequency	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41386491	41386491	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41386491	41386491	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A4	1576	broad.mit.edu	37	7	99358457	99358457	+	Silent	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99311132	99311132	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99311132	99311132	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH4	27128	broad.mit.edu	37	22	37697075	37697075	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH4	27128	broad.mit.edu	37	22	37697075	37697075	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58515013	58515013	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58515013	58515013	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58550227	58550227	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85403695	85403695	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85403695	85403695	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4B	80174	broad.mit.edu	37	17	42824438	42824438	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4B	80174	broad.mit.edu	37	17	42824438	42824438	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176887283	176887283	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX2	440097	broad.mit.edu	37	12	45410296	45410296	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX2	440097	broad.mit.edu	37	12	45410296	45410296	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125686243	125686243	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125686243	125686243	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31312213	31312214	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31312213	31312214	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661983	6661983	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661983	6661983	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6662523	6662523	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36700141	36700141	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36700141	36700141	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74597136	74597136	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61077340	61077340	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61077340	61077340	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50547602	50547602	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX20	11218	broad.mit.edu	37	1	112308806	112308806	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX20	11218	broad.mit.edu	37	1	112308806	112308806	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169348279	169348279	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169383281	169383281	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169348279	169348279	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB112	245915	broad.mit.edu	37	6	50011359	50011359	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB112	245915	broad.mit.edu	37	6	50011359	50011359	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140301227	140301227	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140301227	140301227	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31577453	31577453	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1	55635	broad.mit.edu	37	1	68949537	68949537	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14231480	14231480	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14661113	14661113	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14231480	14231480	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14661113	14661113	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKE	8526	broad.mit.edu	37	17	54912287	54912287	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137407412	137407412	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137198578	137198578	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137407412	137407412	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX34	9704	broad.mit.edu	37	19	47884643	47884643	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125435313	125435313	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125435313	125435313	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95572635	95572635	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRAS3	9077	broad.mit.edu	37	1	68512673	68512673	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRAS3	9077	broad.mit.edu	37	1	68512673	68512673	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223178410	223178410	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107844969	107844969	+	3'UTR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107845748	107845748	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107845748	107845748	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	12943774	12943774	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	12943774	12943774	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83173087	83173087	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83173087	83173087	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3845280	3845280	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3845280	3845280	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX3	1747	broad.mit.edu	37	17	48072147	48072147	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX3	1747	broad.mit.edu	37	17	48072147	48072147	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124344982	124344982	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31341838	31341838	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31341838	31341838	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52428846	52428846	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38867598	38867598	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38976553	38976553	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38867598	38867598	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38976553	38976553	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299101	186299101	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299101	186299101	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC16	23341	broad.mit.edu	37	1	15874813	15874813	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117788700	117788700	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPAGT1	1798	broad.mit.edu	37	11	118971090	118971090	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPAGT1	1798	broad.mit.edu	37	11	118971090	118971090	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68026508	68026508	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68026508	68026508	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73198410	73198410	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162868405	162868405	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379601	154379601	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379663	154379663	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379601	154379601	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379663	154379663	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL2	1808	broad.mit.edu	37	8	26485502	26485502	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL2	1808	broad.mit.edu	37	8	26485502	26485502	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113858287	113858287	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113858287	113858287	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28577024	28577024	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28577024	28577024	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28577030	28577030	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117308768	117308768	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117308768	117308768	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41683912	41683912	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41683912	41683912	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28923371	28923371	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28923371	28923371	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29055815	29055815	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29055815	29055815	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88533354	88533354	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88534203	88534203	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88533354	88533354	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88534203	88534203	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56504641	56504641	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56504641	56504641	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNBP1	84062	broad.mit.edu	37	6	15637915	15637915	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNBP1	84062	broad.mit.edu	37	6	15637915	15637915	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS4L	11062	broad.mit.edu	37	7	107214306	107214306	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS4L	11062	broad.mit.edu	37	7	107214306	107214306	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207527696	207527696	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207530513	207530513	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207527696	207527696	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207530513	207530513	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108396542	108396542	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158140212	158140212	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25708042	25708042	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25708042	25708042	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233346356	233346356	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECHDC1	55862	broad.mit.edu	37	6	127651821	127651821	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236647671	236647671	+	3'UTR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83550109	83550109	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83550109	83550109	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN2	1907	broad.mit.edu	37	1	41948217	41948217	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN2	1907	broad.mit.edu	37	1	41948217	41948217	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78492316	78492316	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78492316	78492316	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406218	106406218	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406218	106406218	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1	1915	broad.mit.edu	37	6	74228549	74228549	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1	1915	broad.mit.edu	37	6	74228549	74228549	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49647613	49647613	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49647613	49647613	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNA2	1943	broad.mit.edu	37	19	1295874	1295874	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82533698	82533698	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82533698	82533698	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38463172	38463172	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110914570	110914570	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88885469	88885469	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88885469	88885469	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40301768	40301768	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117658741	117658741	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117658741	117658741	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMCN	51705	broad.mit.edu	37	4	101344211	101344211	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMCN	51705	broad.mit.edu	37	4	101344211	101344211	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID1	129080	broad.mit.edu	37	22	29630395	29630395	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39990391	39990391	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39990391	39990391	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML4	27436	broad.mit.edu	37	2	42530318	42530318	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML4	27436	broad.mit.edu	37	2	42530318	42530318	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO2	2026	broad.mit.edu	37	12	7031662	7031662	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO2	2026	broad.mit.edu	37	12	7031662	7031662	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111436540	111436540	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111436540	111436540	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD2	954	broad.mit.edu	37	9	139946243	139946243	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EOMES	8320	broad.mit.edu	37	3	27760634	27760634	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46587570	46587570	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111947854	111947854	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111947854	111947854	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66439744	66439745	+	Intron	DEL	AC	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66439744	66439745	+	Intron	DEL	AC	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97439074	97439074	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97439074	97439074	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144940245	144940245	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110294756	110294756	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110294756	110294756	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103501801	103501801	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103501801	103501801	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC1	57222	broad.mit.edu	37	5	172377742	172377742	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERO1LB	56605	broad.mit.edu	37	1	236389807	236389807	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53668750	53668750	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETFDH	2110	broad.mit.edu	37	4	159603226	159603226	+	Intron	DEL	A	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128358978	128358978	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV1	2115	broad.mit.edu	37	7	13971019	13971019	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242048689	242048689	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242048689	242048689	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3L	283849	broad.mit.edu	37	16	67220363	67220363	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118830508	118830508	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44097136	44097136	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44097136	44097136	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133849981	133849981	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66063322	66063322	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	65443544	65443544	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66063322	66063322	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66204948	66204948	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2RL1	2150	broad.mit.edu	37	5	76128923	76128923	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2RL1	2150	broad.mit.edu	37	5	76128923	76128923	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP9	646480	broad.mit.edu	37	8	82370795	82370795	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP9	646480	broad.mit.edu	37	8	82371585	82371585	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP9	646480	broad.mit.edu	37	8	82370795	82370795	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP9	646480	broad.mit.edu	37	8	82371585	82371585	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF2	23197	broad.mit.edu	37	5	175919294	175919294	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF2	23197	broad.mit.edu	37	5	175919294	175919294	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM111B	374393	broad.mit.edu	37	11	58891882	58891882	+	Missense_Mutation	SNP	C	A	A	rs150852006		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM111B	374393	broad.mit.edu	37	11	58891882	58891882	+	Missense_Mutation	SNP	C	A	A	rs150852006		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM115A	9747	broad.mit.edu	37	7	143554555	143554555	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129C	199786	broad.mit.edu	37	19	17648208	17648208	+	Missense_Mutation	SNP	G	T	T	rs113569844	byFrequency;by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139155396	139155396	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164526	139164527	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380236	139380236	+	5'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139144901	139144901	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139155396	139155396	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164526	139164527	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380236	139380236	+	5'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM175A	84142	broad.mit.edu	37	4	84390093	84390093	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222922783	222922783	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222922783	222922783	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45490111	45490111	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45490111	45490111	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91230336	91230336	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91230336	91230336	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A5	25817	broad.mit.edu	37	22	49042450	49042450	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21A	387680	broad.mit.edu	37	10	51892506	51892506	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21A	387680	broad.mit.edu	37	10	51892506	51892506	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028810	37028810	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028810	37028810	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49A	81553	broad.mit.edu	37	2	16740922	16740922	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49A	81553	broad.mit.edu	37	2	16740922	16740922	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55D	54827	broad.mit.edu	37	11	114453150	114453150	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55D	54827	broad.mit.edu	37	11	114453150	114453150	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190424085	190424085	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71A	149647	broad.mit.edu	37	1	212799845	212799845	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71A	149647	broad.mit.edu	37	1	212799845	212799845	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM96A	84191	broad.mit.edu	37	15	64380925	64380925	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM96A	84191	broad.mit.edu	37	15	64380925	64380925	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCG	2189	broad.mit.edu	37	9	35079414	35079414	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCG	2189	broad.mit.edu	37	9	35079414	35079414	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163055370	163055370	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163055370	163055370	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29486613	29486613	+	Silent	SNP	C	T	T	rs142204438	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29486613	29486613	+	Silent	SNP	C	T	T	rs142204438	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD2	22868	broad.mit.edu	37	2	207635937	207635937	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD2	22868	broad.mit.edu	37	2	207635937	207635937	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187541804	187541804	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187541804	187541804	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45958897	45958897	+	Intron	SNP	G	A	A	rs138959755	byFrequency;by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48723050	48723050	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48723050	48723050	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5956067	5956067	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5956067	5956067	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55386658	55386658	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40367914	40367914	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40367914	40367914	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157513954	157513955	+	Intron	INS	-	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLA	84824	broad.mit.edu	37	1	161680508	161680508	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLB	127943	broad.mit.edu	37	1	161692781	161692781	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLB	127943	broad.mit.edu	37	1	161692781	161692781	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FDXR	2232	broad.mit.edu	37	17	72862348	72862348	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR2	2867	broad.mit.edu	37	19	35941684	35941684	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR2	2867	broad.mit.edu	37	19	35941684	35941684	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32735077	32735077	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFRL1	53834	broad.mit.edu	37	4	1006103	1006103	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1L	11259	broad.mit.edu	37	3	99552027	99552027	+	3'UTR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1L	11259	broad.mit.edu	37	3	99552027	99552027	+	3'UTR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP1A	2280	broad.mit.edu	37	20	1352998	1352998	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP1A	2280	broad.mit.edu	37	20	1352998	1352998	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP3	2287	broad.mit.edu	37	14	45603642	45603642	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP3	2287	broad.mit.edu	37	14	45603642	45603642	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89084383	89084383	+	RNA	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607513	84607513	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607513	84607513	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240493928	240493928	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240493928	240493928	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159677570	159677571	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49227540	49227540	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXA3	3171	broad.mit.edu	37	19	46376130	46376130	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXA3	3171	broad.mit.edu	37	19	46376130	46376130	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4794033	4794033	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR1	283150	broad.mit.edu	37	11	118851198	118851198	+	Splice_Site	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR1	283150	broad.mit.edu	37	11	118851198	118851198	+	Splice_Site	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79360270	79360270	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79455558	79455558	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79360270	79360270	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79455558	79455558	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29652102	29652103	+	Intron	INS	-	T	T	rs71264009		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37724227	37724227	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37724227	37724227	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49371699	49371699	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32776615	32776615	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32776615	32776615	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHB	2488	broad.mit.edu	37	11	30255202	30255202	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHB	2488	broad.mit.edu	37	11	30255202	30255202	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52779455	52779455	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52779455	52779455	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52781498	52781498	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	111982923	111982923	+	3'UTR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153944168	153944168	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153944168	153944168	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151533027	151533027	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151533027	151533027	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26806314	26806314	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26806314	26806314	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151123796	151123796	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26570061	26570061	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26570061	26570061	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST2	64090	broad.mit.edu	37	2	242741438	242741438	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST2	64090	broad.mit.edu	37	2	242742789	242742789	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT3	2591	broad.mit.edu	37	2	166621627	166621627	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16254145	16254145	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16254145	16254145	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL5	168391	broad.mit.edu	37	7	151704860	151704860	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL5	168391	broad.mit.edu	37	7	151704860	151704860	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP3	2635	broad.mit.edu	37	1	89481013	89481013	+	Missense_Mutation	SNP	G	A	A	rs142900270	byFrequency;by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP3	2635	broad.mit.edu	37	1	89481019	89481019	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP3	2635	broad.mit.edu	37	1	89481013	89481013	+	Missense_Mutation	SNP	G	A	A	rs142900270	byFrequency;by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP3	2635	broad.mit.edu	37	1	89481019	89481019	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCAT	23464	broad.mit.edu	37	22	38212280	38212280	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCAT	23464	broad.mit.edu	37	22	38212280	38212280	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76954630	76954630	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76954630	76954630	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61995377	61995377	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61995377	61995377	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31010827	31010827	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31010827	31010827	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF1	64599	broad.mit.edu	37	7	100284451	100284451	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF1	64599	broad.mit.edu	37	7	100284451	100284451	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110429605	110429605	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110429605	110429605	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90604983	90604983	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90604983	90604983	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L2	89944	broad.mit.edu	37	11	134240907	134240907	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L2	89944	broad.mit.edu	37	11	134240907	134240907	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L3	112937	broad.mit.edu	37	11	134147821	134147821	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L3	112937	broad.mit.edu	37	11	134182050	134182050	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L3	112937	broad.mit.edu	37	11	134147821	134147821	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6588507	6588507	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6588507	6588507	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121732831	121732831	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLMN	11146	broad.mit.edu	37	1	92754745	92754745	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLMN	11146	broad.mit.edu	37	1	92754745	92754745	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14627186	14627186	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14627186	14627186	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPPA	29926	broad.mit.edu	37	2	220366836	220366836	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPPA	29926	broad.mit.edu	37	2	220366836	220366836	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG11	2791	broad.mit.edu	37	7	93555536	93555536	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG11	2791	broad.mit.edu	37	7	93555536	93555536	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52417413	52417413	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPDA2	132789	broad.mit.edu	37	4	44713078	44713078	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPDA2	132789	broad.mit.edu	37	4	44713078	44713078	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8DP	100132979	broad.mit.edu	37	15	22709894	22709894	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP6	51206	broad.mit.edu	37	19	55543670	55543670	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167023848	167023848	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973289	48973289	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973302	48973302	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973377	48973377	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973405	48973405	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973451	48973451	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973289	48973289	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973302	48973302	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973377	48973377	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973405	48973405	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48973451	48973451	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136112543	136112543	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR113	165082	broad.mit.edu	37	2	26534034	26534034	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR115	221393	broad.mit.edu	37	6	47682493	47682493	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR124	25960	broad.mit.edu	37	8	37686860	37686860	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR180	160897	broad.mit.edu	37	13	95273308	95273308	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR180	160897	broad.mit.edu	37	13	95273308	95273308	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR34	2857	broad.mit.edu	37	X	41554925	41554925	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37900486	37900486	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105795526	105795526	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87373377	87373377	+	Silent	SNP	G	A	A	rs139855051	byFrequency	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30959584	30959584	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104375693	104375693	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121093434	121093434	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780375	88780375	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7620536	7620536	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7620536	7620536	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126249297	126249297	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126249297	126249297	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144966154	144966154	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144966154	144966154	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP5	26164	broad.mit.edu	37	20	60774369	60774369	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156631670	156631670	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156631670	156631670	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS2	2998	broad.mit.edu	37	12	21728645	21728645	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H3F3C	440093	broad.mit.edu	37	12	31944658	31944658	+	3'UTR	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H3F3C	440093	broad.mit.edu	37	12	31944658	31944658	+	3'UTR	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACL1	26061	broad.mit.edu	37	3	15609521	15609521	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN3	145864	broad.mit.edu	37	15	89424754	89424754	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN3	145864	broad.mit.edu	37	15	89424754	89424754	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122626240	122626240	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122641020	122641020	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122626240	122626240	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS2	55142	broad.mit.edu	37	15	42855861	42855861	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBD	3045	broad.mit.edu	37	11	5255426	5255426	+	Missense_Mutation	SNP	G	T	T	rs34383555		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC2	3066	broad.mit.edu	37	6	114277837	114277837	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48661516	48661516	+	Intron	DEL	T	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFL1	154150	broad.mit.edu	37	6	22569979	22569979	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFL1	154150	broad.mit.edu	37	6	22569979	22569979	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37302747	37302747	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37302747	37302747	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58134604	58134604	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58134604	58134604	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41005768	41005768	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41005768	41005768	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECA	51696	broad.mit.edu	37	6	139488509	139488509	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECA	51696	broad.mit.edu	37	6	139488509	139488509	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43490384	43490384	+	Intron	SNP	C	T	T	rs143926051	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197182014	197182014	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197194219	197194219	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197194473	197194473	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197298062	197298062	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197182014	197182014	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197184122	197184122	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197194219	197194219	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197194473	197194473	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197298062	197298062	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124739860	124739860	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124739860	124739860	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84376684	84376698	+	In_Frame_Del	DEL	TTTTCCGCCTCCTGT	-	-	rs150006112	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84376684	84376698	+	In_Frame_Del	DEL	TTTTCCGCCTCCTGT	-	-	rs150006112	byFrequency	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69716678	69716678	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100128993	100128993	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIAT1	64645	broad.mit.edu	37	1	100535061	100535061	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75171247	75171247	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75171247	75171247	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19348893	19348893	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19348893	19348893	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AH	85235	broad.mit.edu	37	6	27115128	27115128	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AH	85235	broad.mit.edu	37	6	27115128	27115128	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AJ	8331	broad.mit.edu	37	6	27782453	27782453	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AJ	8331	broad.mit.edu	37	6	27782453	27782453	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BC	8347	broad.mit.edu	37	6	26123802	26123802	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BC	8347	broad.mit.edu	37	6	26123802	26123802	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143080972	143080972	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143080972	143080972	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71075716	71075716	+	5'Flank	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71075716	71075716	+	5'Flank	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71010247	71010247	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71010247	71010247	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29961702	29961702	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLTF	6596	broad.mit.edu	37	3	148759927	148759927	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185815075	185815075	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43297159	43297159	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43297159	43297159	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26236615	26236615	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26236626	26236626	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26236615	26236615	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26236626	26236626	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPK	3190	broad.mit.edu	37	9	86592668	86592668	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPK	3190	broad.mit.edu	37	9	86592668	86592668	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245018903	245018903	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245018903	245018903	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46607116	46607116	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46607116	46607116	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46657364	46657364	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC8	3224	broad.mit.edu	37	12	54404855	54404855	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC8	3224	broad.mit.edu	37	12	54404855	54404855	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD9	3235	broad.mit.edu	37	2	176988915	176988915	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD9	3235	broad.mit.edu	37	2	176988915	176988915	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPGD	3248	broad.mit.edu	37	4	175413100	175413100	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPGD	3248	broad.mit.edu	37	4	175413100	175413100	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRASLS2	54979	broad.mit.edu	37	11	63326318	63326318	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186395193	186395193	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186395193	186395193	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114383792	114383792	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA8	3312	broad.mit.edu	37	11	122930824	122930824	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA8	3312	broad.mit.edu	37	11	122930824	122930824	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA9	3313	broad.mit.edu	37	5	137909529	137909529	+	Missense_Mutation	SNP	T	C	C	rs138260125		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA9	3313	broad.mit.edu	37	5	137909529	137909529	+	Missense_Mutation	SNP	T	C	C	rs138260125		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPD1	3329	broad.mit.edu	37	2	198353668	198353668	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPD1	3329	broad.mit.edu	37	2	198353668	198353668	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31714483	31714483	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31714483	31714483	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1F	3355	broad.mit.edu	37	3	88040798	88040798	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1F	3355	broad.mit.edu	37	3	88040798	88040798	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53641577	53641577	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53657806	53657806	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53641577	53641577	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HVCN1	84329	broad.mit.edu	37	12	111099066	111099066	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HVCN1	84329	broad.mit.edu	37	12	111099066	111099066	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS2	55699	broad.mit.edu	37	1	220319070	220319070	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44	10561	broad.mit.edu	37	1	79129581	79129581	+	3'UTR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201184303	201184303	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201184303	201184303	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151174593	151174593	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37991324	37991324	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37991324	37991324	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL10RA	3587	broad.mit.edu	37	11	117870171	117870171	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL10RA	3587	broad.mit.edu	37	11	117870171	117870171	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB1	3594	broad.mit.edu	37	19	18194265	18194265	+	Frame_Shift_Del	DEL	G	-	-	rs113524129	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81591951	81591951	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81591951	81591951	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18BP	10068	broad.mit.edu	37	11	71712876	71712876	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	28677275	28677275	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	28677275	28677275	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27456538	27456538	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27456538	27456538	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2	3558	broad.mit.edu	37	4	123372977	123372977	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7	3574	broad.mit.edu	37	8	79673006	79673006	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7	3574	broad.mit.edu	37	8	79673006	79673006	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR1	286676	broad.mit.edu	37	3	121712504	121712504	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR1	286676	broad.mit.edu	37	3	121712504	121712504	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76728444	76728444	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76728444	76728444	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100951486	100951486	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING1	3621	broad.mit.edu	37	13	111371525	111371525	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING1	3621	broad.mit.edu	37	13	111371525	111371525	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99193584	99193584	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99193584	99193584	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	142950155	142950155	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INS-IGF2	723961	broad.mit.edu	37	11	2170331	2170331	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INS-IGF2	723961	broad.mit.edu	37	11	2170331	2170331	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156823768	156823768	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156823768	156823768	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS12	57117	broad.mit.edu	37	4	106614450	106614450	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201827572	201827572	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201827572	201827572	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC2	23096	broad.mit.edu	37	X	53283752	53283752	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK1	3654	broad.mit.edu	37	X	153281730	153281730	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3600327	3600327	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52204758	52204758	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52351515	52351515	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52351515	52351515	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46306809	46306809	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156668850	156668850	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156670882	156670882	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156670882	156670882	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17937431	17937431	+	3'UTR	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147016513	147016513	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147016513	147016513	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64976851	64976851	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42814791	42814791	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUB	84962	broad.mit.edu	37	14	23445718	23445718	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUB	84962	broad.mit.edu	37	14	23445718	23445718	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39919203	39919203	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39919203	39919203	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62747332	62747332	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62747332	62747332	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170336019	170336019	+	Translation_Start_Site	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170336019	170336019	+	Translation_Start_Site	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146592	111146592	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111147346	111147346	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146592	111146592	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111147346	111147346	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA6	3742	broad.mit.edu	37	12	4920328	4920328	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444633	75444633	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444633	75444633	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	210970655	210970655	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19384041	19384041	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19432278	19432278	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19384041	19384041	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19575320	19575331	+	In_Frame_Del	DEL	CTACGTTGACGC	-	-	rs138146037	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88693908	88693909	+	Intron	INS	-	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88693908	88693909	+	Intron	INS	-	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78708951	78708951	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196205220	196205220	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196342234	196342234	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196205219	196205220	+	Intron	DNP	CC	AA	AA			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36763473	36763473	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142640627	142640627	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142640627	142640627	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136657255	136657255	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136657255	136657255	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0174	9798	broad.mit.edu	37	16	71955338	71955338	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0174	9798	broad.mit.edu	37	16	71955338	71955338	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24601417	24601417	+	5'UTR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105538144	105538144	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105538144	105538144	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123165092	123165092	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123165092	123165092	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118238981	118238981	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118238981	118238981	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181273	57181273	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181273	57181273	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118687204	118687204	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73964291	73964291	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73964291	73964291	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39701384	39701384	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39716581	39716581	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39716581	39716581	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34257209	34257209	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34257209	34257209	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158063317	158063317	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158063317	158063317	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF10	7071	broad.mit.edu	37	8	103664623	103664623	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70549748	70549748	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL31	401265	broad.mit.edu	37	6	53516293	53516293	+	3'UTR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRF1	51348	broad.mit.edu	37	12	9994733	9994733	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241719037	241719037	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241719037	241719037	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA4	3840	broad.mit.edu	37	3	160285713	160285713	+	5'Flank	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRIT1	889	broad.mit.edu	37	7	91865874	91865874	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRIT1	889	broad.mit.edu	37	7	91865874	91865874	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53009027	53009027	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53009027	53009027	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-2	386679	broad.mit.edu	37	21	45970637	45970637	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-2	386679	broad.mit.edu	37	21	45970637	45970637	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-11	440051	broad.mit.edu	37	11	71293630	71293630	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-11	440051	broad.mit.edu	37	11	71293630	71293630	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs144216147		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143712289	143712289	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153134081	153134081	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153134081	153134081	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130404860	130404860	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	5969418	5969418	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42143558	42143558	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6972999	6972999	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6982656	6982656	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6972999	6972999	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112461245	112461245	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60890128	60890128	+	Missense_Mutation	SNP	C	T	T	rs149325805		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107669709	107669709	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107743504	107743504	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107669709	107669709	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107743504	107743504	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183100595	183100598	+	Intron	DEL	TATT	-	-	rs66522331		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183189974	183189974	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183189974	183189974	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3A	353142	broad.mit.edu	37	1	152595433	152595433	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3A	353142	broad.mit.edu	37	1	152595433	152595433	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109088767	109088767	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109088767	109088767	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS2	3957	broad.mit.edu	37	22	37966600	37966600	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS2	3957	broad.mit.edu	37	22	37966600	37966600	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS3BP	3959	broad.mit.edu	37	17	76970713	76970713	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25967594	25967594	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25967594	25967594	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX5	64211	broad.mit.edu	37	12	113906217	113906217	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48620931	48620931	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48620931	48620931	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48653355	48653355	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54783844	54783844	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54783844	54783844	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41687737	41687737	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41687737	41687737	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28A	79727	broad.mit.edu	37	1	26738039	26738039	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28A	79727	broad.mit.edu	37	1	26738039	26738039	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN52	91750	broad.mit.edu	37	14	74567682	74567682	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN9	286826	broad.mit.edu	37	1	226426782	226426782	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN9	286826	broad.mit.edu	37	1	226426782	226426782	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27949535	27949535	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27949535	27949535	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58830684	58830684	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58830684	58830684	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPM	340654	broad.mit.edu	37	10	90572926	90572926	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPM	340654	broad.mit.edu	37	10	90572926	90572926	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1	3998	broad.mit.edu	37	18	57026338	57026338	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1	3998	broad.mit.edu	37	18	57026338	57026338	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBR1L	55716	broad.mit.edu	37	12	49494144	49494144	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090281	238090281	+	RNA	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090281	238090281	+	RNA	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC388152	388152	broad.mit.edu	37	15	84868453	84868453	+	RNA	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936549	21936549	+	RNA	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936564	21936564	+	RNA	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936549	21936549	+	RNA	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936564	21936564	+	RNA	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650623	650623	broad.mit.edu	37	10	81442884	81442884	+	RNA	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650623	650623	broad.mit.edu	37	10	81442884	81442884	+	RNA	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC81691	81691	broad.mit.edu	37	16	20833036	20833036	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC81691	81691	broad.mit.edu	37	16	20833036	20833036	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL2	4017	broad.mit.edu	37	8	23155747	23155747	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR4	2846	broad.mit.edu	37	X	78010954	78010954	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR4	2846	broad.mit.edu	37	X	78010954	78010954	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99470209	99470209	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99470209	99470209	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188202445	188202445	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188202445	188202445	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151765774	151765774	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151765810	151765810	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151765774	151765774	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151765810	151765810	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66432181	66432181	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG2	9860	broad.mit.edu	37	1	113638833	113638833	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG2	9860	broad.mit.edu	37	1	113638833	113638833	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141032165	141032165	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141032165	141032165	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170097415	170097415	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25471359	25471359	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25471359	25471359	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B	114659	broad.mit.edu	37	17	30349570	30349570	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B	114659	broad.mit.edu	37	17	30349570	30349570	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC42	115353	broad.mit.edu	37	1	54427876	54427876	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC42	115353	broad.mit.edu	37	1	54427876	54427876	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92170881	92170881	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92170881	92170881	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8C	84230	broad.mit.edu	37	1	90178876	90178876	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRCC1	85444	broad.mit.edu	37	8	86042277	86042277	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRCC1	85444	broad.mit.edu	37	8	86042277	86042277	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77746613	77746613	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77746613	77746613	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1905419	1905419	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1905419	1905419	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33614141	33614142	+	Intron	DEL	AC	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74975375	74975375	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74975375	74975375	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39765882	39765882	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39788376	39788376	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39765882	39765882	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39788376	39788376	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47314115	47314115	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47314115	47314115	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166973415	166973415	+	Splice_Site	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254960	30254961	+	Missense_Mutation	DNP	TA	GT	GT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254960	30254961	+	Missense_Mutation	DNP	TA	GT	GT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140984475	140984475	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140984475	140984475	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED1	9500	broad.mit.edu	37	X	51637834	51637834	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED1	9500	broad.mit.edu	37	X	51637834	51637834	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35803260	35803260	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35803260	35803260	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12013830	12013830	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K12	7786	broad.mit.edu	37	12	53881317	53881317	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185135164	185135164	+	Intron	SNP	T	A	A	rs148526119	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185135164	185135164	+	Intron	SNP	T	A	A	rs148526119	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43366556	43366556	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71197442	71197442	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71197442	71197442	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39090803	39090803	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39090803	39090803	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH7	64844	broad.mit.edu	37	2	160619566	160619566	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAS1	4142	broad.mit.edu	37	6	160328002	160328002	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186954049	186954049	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186954049	186954049	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN1	4146	broad.mit.edu	37	1	31194232	31194232	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN1	4146	broad.mit.edu	37	1	31194232	31194232	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	99015950	99015950	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47799766	47799766	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47799766	47799766	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100395759	100395759	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100395759	100395759	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME2	4200	broad.mit.edu	37	18	48447064	48447064	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME2	4200	broad.mit.edu	37	18	48447064	48447064	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECR	51102	broad.mit.edu	37	1	29528418	29528418	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37565297	37565297	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37565297	37565297	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED8	112950	broad.mit.edu	37	1	43852785	43852785	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED8	112950	broad.mit.edu	37	1	43852785	43852785	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28135220	28135220	+	Intron	DEL	T	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28135225	28135225	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL9	51108	broad.mit.edu	37	16	21655748	21655748	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL9	51108	broad.mit.edu	37	16	21655748	21655748	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEX3C	51320	broad.mit.edu	37	18	48703798	48703798	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEX3C	51320	broad.mit.edu	37	18	48703503	48703503	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEX3C	51320	broad.mit.edu	37	18	48703798	48703798	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40433393	40433393	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40433393	40433393	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128842683	128842683	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128842683	128842683	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86373677	86373677	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86373677	86373677	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST2	4258	broad.mit.edu	37	4	140587104	140587104	+	5'UTR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST2	4258	broad.mit.edu	37	4	140587104	140587104	+	5'UTR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA	8190	broad.mit.edu	37	19	41281318	41281318	+	5'UTR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB2	142678	broad.mit.edu	37	1	1563878	1563878	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109765934	109765934	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR656	724026	broad.mit.edu	37	14	101533098	101533098	+	RNA	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR656	724026	broad.mit.edu	37	14	101533098	101533098	+	RNA	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129907466	129907466	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129907466	129907466	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56289822	56289822	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56289822	56289822	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37053623	37053623	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151891350	151891350	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118366733	118366733	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118366733	118366733	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAA	166785	broad.mit.edu	37	4	146567084	146567084	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAA	166785	broad.mit.edu	37	4	146572343	146572343	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAA	166785	broad.mit.edu	37	4	146567084	146567084	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154878336	154878336	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537947	174537947	+	5'Flank	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537947	174537947	+	5'Flank	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP4	58538	broad.mit.edu	37	2	202549823	202549823	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL17	63875	broad.mit.edu	37	11	6704014	6704014	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL17	63875	broad.mit.edu	37	11	6704014	6704014	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL3	11222	broad.mit.edu	37	3	131216895	131216895	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60068593	60068593	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A5	64232	broad.mit.edu	37	11	60198329	60198329	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60150636	60150636	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60150636	60150636	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754874	72754874	+	3'UTR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754874	72754874	+	3'UTR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	819450	819450	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSX1	4487	broad.mit.edu	37	4	4864774	4864774	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR1	8776	broad.mit.edu	37	X	149919611	149919611	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100510936	100510936	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1158282	1158282	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1215494	1215494	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1262071	1262071	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346890	71346890	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346890	71346890	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47361035	47361035	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47361035	47361035	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF5	4617	broad.mit.edu	37	12	81112271	81112271	+	Intron	SNP	A	G	G	rs150399452	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF5	4617	broad.mit.edu	37	12	81112271	81112271	+	Intron	SNP	A	G	G	rs150399452	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15917231	15917231	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15917231	15917231	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108219032	108219032	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10369629	10369629	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10369629	10369629	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23851669	23851669	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23851669	23851669	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23862274	23862274	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23882919	23882919	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23892939	23892939	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23882919	23882919	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884664	23884664	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23892939	23892939	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2678623	2678623	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2678623	2678623	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16680326	16680326	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109550579	109550579	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109550579	109550579	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8591385	8591385	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128394197	128394197	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95216596	95216596	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95216596	95216596	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175294006	175294006	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175294006	175294006	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARFL	64428	broad.mit.edu	37	16	782381	782381	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78204159	78204159	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78204159	78204159	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36202192	36202192	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36202192	36202192	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146232655	146232655	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16894104	16894104	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16894140	16894140	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16910379	16910379	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF3	84224	broad.mit.edu	37	1	21801677	21801677	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97020047	97020047	+	Missense_Mutation	SNP	G	A	A	rs144694271		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCDN	23154	broad.mit.edu	37	1	36029491	36029491	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCDN	23154	broad.mit.edu	37	1	36029491	36029491	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54914811	54914811	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54925558	54925558	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54914811	54914811	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54925558	54925558	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133489461	133489461	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133489461	133489461	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115856586	115856586	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	116030110	116030110	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115997379	115997379	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152467404	152467404	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152467404	152467404	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72163599	72163599	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72163734	72163734	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72163734	72163734	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27244069	27244069	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27244069	27244069	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130889527	130889527	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73528761	73528761	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73528761	73528761	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70532264	70532264	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22143167	22143167	+	RNA	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22143167	22143167	+	RNA	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657349	29657349	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657349	29657349	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68225604	68225604	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68225604	68225604	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFYC	4802	broad.mit.edu	37	1	41236480	41236480	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103866543	103866543	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103866543	103866543	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC2	133308	broad.mit.edu	37	4	103949926	103949926	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC2	133308	broad.mit.edu	37	4	103949926	103949926	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173993231	173993231	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56490839	56490839	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56490839	56490839	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMBR	4829	broad.mit.edu	37	6	142397123	142397123	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMBR	4829	broad.mit.edu	37	6	142397123	142397123	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101093874	101093874	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101093874	101093874	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139396481	139396482	+	Frame_Shift_Ins	INS	-	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139396481	139396482	+	Frame_Shift_Ins	INS	-	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69329349	69329350	+	Intron	INS	-	C	C	rs34822351		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108040747	108040747	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108040747	108040747	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPPS	9520	broad.mit.edu	37	17	45681260	45681260	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTN	27020	broad.mit.edu	37	15	73884610	73884610	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119501525	119501525	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52301803	52301803	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52301803	52301803	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRSN2	80023	broad.mit.edu	37	20	334097	334097	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79434538	79434538	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80328143	80328143	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79434538	79434538	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80328143	80328143	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSF	4905	broad.mit.edu	37	17	44782158	44782158	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSF	4905	broad.mit.edu	37	17	44782158	44782158	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5E	4907	broad.mit.edu	37	6	86177027	86177027	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88423449	88423449	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88575954	88575954	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88678465	88678465	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88423449	88423449	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88575954	88575954	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88678465	88678465	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT3	11165	broad.mit.edu	37	6	34323722	34323722	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT5	11164	broad.mit.edu	37	10	12209745	12209745	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73743882	73743882	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73743882	73743882	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135258380	135258380	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUS1	116150	broad.mit.edu	37	6	118015366	118015366	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092342	101092342	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092342	101092342	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228509331	228509331	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228509331	228509331	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28141200	28141200	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28235642	28235642	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28141200	28141200	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28235642	28235642	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128694647	128694647	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128694647	128694647	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF3B	440836	broad.mit.edu	37	22	50969207	50969207	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123631060	123631060	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123631060	123631060	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50946224	50946224	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50946224	50946224	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44687385	44687385	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44687385	44687385	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102271669	102271669	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102271669	102271669	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67283757	67283757	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67283757	67283757	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A3	26496	broad.mit.edu	37	11	7961052	7961052	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A3	26496	broad.mit.edu	37	11	7961052	7961052	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G4	390264	broad.mit.edu	37	11	123887150	123887150	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G4	390264	broad.mit.edu	37	11	123887150	123887150	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10T2	128360	broad.mit.edu	37	1	158368853	158368853	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10T2	128360	broad.mit.edu	37	1	158368853	158368853	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29394899	29394899	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29394899	29394899	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D2	4991	broad.mit.edu	37	17	2995964	2995964	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9203967	9203967	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9203967	9203967	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A14	135941	broad.mit.edu	37	7	143827010	143827010	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A14	135941	broad.mit.edu	37	7	143827010	143827010	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247751695	247751695	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247751695	247751695	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247333	248247333	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247333	248247333	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136184	55136184	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C3	256144	broad.mit.edu	37	11	48346726	48346726	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20345048	20345048	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55418305	55418305	+	5'Flank	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4674113	4674113	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4674113	4674113	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B2	255725	broad.mit.edu	37	11	6190952	6190952	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B2	255725	broad.mit.edu	37	11	6190952	6190952	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6024118	6024118	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6024118	6024118	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A2	219981	broad.mit.edu	37	11	59190132	59190132	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A2	219981	broad.mit.edu	37	11	59190132	59190132	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6A2	8590	broad.mit.edu	37	11	6816486	6816486	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6A2	8590	broad.mit.edu	37	11	6816486	6816486	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158735615	158735615	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158735615	158735615	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A10	390892	broad.mit.edu	37	19	14952191	14952191	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A10	390892	broad.mit.edu	37	19	14952191	14952191	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A17	26333	broad.mit.edu	37	19	14991871	14991871	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A17	26333	broad.mit.edu	37	19	14991871	14991871	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C2	26658	broad.mit.edu	37	19	15052376	15052376	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C2	26658	broad.mit.edu	37	19	15052376	15052376	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55927514	55927514	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55927514	55927514	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24854632	24854633	+	Intron	INS	-	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24854632	24854633	+	Intron	INS	-	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76786490	76786490	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76786490	76786490	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21739597	21739597	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21739597	21739597	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72926822	72926822	+	Silent	SNP	G	A	A	rs150890021	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72926822	72926822	+	Silent	SNP	G	A	A	rs150890021	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31862303	31862303	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31862303	31862303	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX2	5015	broad.mit.edu	37	14	57268677	57268677	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX2	5015	broad.mit.edu	37	14	57268677	57268677	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216847	78216847	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216847	78216847	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P704P	641455	broad.mit.edu	37	14	19990791	19990792	+	Intron	DNP	GG	TT	TT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163483243	163483243	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163483243	163483243	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM	5064	broad.mit.edu	37	19	740338	740338	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK4	55229	broad.mit.edu	37	1	2440356	2440356	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6742737	6742737	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6742737	6742737	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564340	176564340	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176675665	176675665	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564340	176564340	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119124830	119124830	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119124830	119124830	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS2	9060	broad.mit.edu	37	10	89475536	89475536	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS2	9060	broad.mit.edu	37	10	89475536	89475536	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50056010	50056010	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242063433	242063433	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4925273	4925273	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5442102	5442102	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5605984	5605984	+	3'UTR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4925273	4925273	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5442102	5442102	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5605984	5605984	+	3'UTR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55591271	55591271	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56360207	56360207	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55591271	55591271	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56360207	56360207	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58241008	58241008	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58241008	58241008	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141236765	141236765	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67799482	67799482	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67799482	67799482	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140481535	140481535	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140481535	140481535	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736176	140736176	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736176	140736176	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC4	56098	broad.mit.edu	37	5	140865837	140865837	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82544499	82544499	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82544499	82544499	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142567171	142567171	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE	5118	broad.mit.edu	37	7	100200282	100200282	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105194078	105194078	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14810570	14810570	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14810570	14810570	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66723195	66723195	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66838408	66838408	+	3'UTR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66723195	66723195	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66838408	66838408	+	3'UTR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRL	5157	broad.mit.edu	37	8	17491506	17491506	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410590	20410590	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410590	20410590	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70166028	70166028	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70166028	70166028	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33252926	33252926	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33252926	33252926	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDYN	5173	broad.mit.edu	37	20	1960690	1960690	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41961506	41961506	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41585228	41585228	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX11A	8800	broad.mit.edu	37	15	90226986	90226986	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX11A	8800	broad.mit.edu	37	15	90226986	90226986	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX16	9409	broad.mit.edu	37	11	45935204	45935204	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKP	5214	broad.mit.edu	37	10	3176838	3176838	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28253579	28253579	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28253579	28253579	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP2	114770	broad.mit.edu	37	19	15586354	15586354	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58318161	58318161	+	Splice_Site	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58318161	58318161	+	Splice_Site	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34438823	34438823	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21A	51317	broad.mit.edu	37	11	45970631	45970631	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21B	112885	broad.mit.edu	37	22	45309533	45309533	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI3	5266	broad.mit.edu	37	20	43803721	43803721	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI3	5266	broad.mit.edu	37	20	43803721	43803721	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35092310	35092310	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35092310	35092310	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207112588	207112588	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGT	51604	broad.mit.edu	37	20	44047576	44047576	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGT	51604	broad.mit.edu	37	20	44047576	44047576	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18577623	18577623	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18577623	18577623	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138375084	138375084	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138375084	138375084	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106524641	106524641	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106524641	106524641	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46527515	46527515	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46527515	46527515	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8784284	8784284	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8784284	8784284	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209141468	209141468	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209141468	209141468	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2B	8396	broad.mit.edu	37	17	36927168	36927168	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2B	8396	broad.mit.edu	37	17	36927168	36927168	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15474016	15474016	+	Frame_Shift_Del	DEL	A	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM3	83394	broad.mit.edu	37	17	6371463	6371463	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM3	83394	broad.mit.edu	37	17	6371463	6371463	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94322291	94322291	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94322291	94322291	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457293	110457293	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110504206	110504206	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457293	110457293	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110504206	110504206	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51586695	51586695	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51940969	51940969	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51586695	51586695	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2A	5320	broad.mit.edu	37	1	20304613	20304613	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2A	5320	broad.mit.edu	37	1	20304613	20304613	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G3	50487	broad.mit.edu	37	22	31532872	31532872	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4D	283748	broad.mit.edu	37	15	42363552	42363552	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4D	283748	broad.mit.edu	37	15	42363552	42363552	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4F	255189	broad.mit.edu	37	15	42434278	42434278	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4F	255189	broad.mit.edu	37	15	42434278	42434278	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42046532	42046532	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42046532	42046532	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9343491	9343491	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9343491	9343491	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219487617	219487617	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39791269	39791269	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39791269	39791269	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17056430	17056430	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17056430	17056430	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD3	345557	broad.mit.edu	37	5	41510483	41510483	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD4	122618	broad.mit.edu	37	14	105397021	105397021	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132110036	132110037	+	Intron	INS	-	GAG	GAG			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68045396	68045396	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO2	80301	broad.mit.edu	37	15	65157686	65157686	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO2	80301	broad.mit.edu	37	15	65157686	65157686	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114877597	114877597	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126726845	126726845	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131908477	131908477	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152936990	152936990	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152938064	152938064	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152936990	152936990	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP2	5408	broad.mit.edu	37	10	118380531	118380531	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP2	5408	broad.mit.edu	37	10	118380531	118380531	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118203902	118203902	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118203902	118203902	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118327209	118327209	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118327209	118327209	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPT1	87178	broad.mit.edu	37	2	55895113	55895113	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPT1	87178	broad.mit.edu	37	2	55895113	55895113	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50905742	50905742	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50905742	50905742	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2177888	2177888	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86274400	86274400	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86274400	86274400	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7415055	7415055	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7415055	7415055	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79773360	79773360	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79773360	79773360	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75608736	75608736	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14513721	14513721	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16279286	16279286	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167370604	167370604	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F3	25833	broad.mit.edu	37	11	120175882	120175882	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F3	25833	broad.mit.edu	37	11	120175882	120175882	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F4	5456	broad.mit.edu	37	X	82763575	82763575	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F4	5456	broad.mit.edu	37	X	82763575	82763575	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39243834	39243834	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39243834	39243834	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81747128	81747128	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81747128	81747128	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202338695	202338695	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202465792	202465792	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202338695	202338695	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202465792	202465792	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104251168	104251168	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104251168	104251168	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182826022	182826022	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182826022	182826022	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2CB	5516	broad.mit.edu	37	8	30655032	30655032	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2CB	5516	broad.mit.edu	37	8	30655032	30655032	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63888812	63888812	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPY	5539	broad.mit.edu	37	17	42018943	42018943	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522757	23522757	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522757	23522757	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527609	23527609	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203452913	203452913	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203452913	203452913	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186279075	186279075	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64800011	64800011	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64800011	64800011	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54385943	54385943	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	54042112	54042112	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	54042112	54042112	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148559746	148559746	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148559746	148559746	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20414614	20414614	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20414614	20414614	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRND	23627	broad.mit.edu	37	20	4705020	4705020	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRODH	5625	broad.mit.edu	37	22	18905888	18905888	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRODH	5625	broad.mit.edu	37	22	18905888	18905888	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF39	55015	broad.mit.edu	37	14	45571881	45571881	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF39	55015	broad.mit.edu	37	14	45571881	45571881	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62626448	62626448	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1581071	1581071	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1581071	1581071	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS2	5634	broad.mit.edu	37	X	12817285	12817285	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43352209	43352209	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD13	5719	broad.mit.edu	37	11	239175	239175	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD3	5709	broad.mit.edu	37	17	38140452	38140453	+	Intron	INS	-	A	A	rs34306234		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD4	5710	broad.mit.edu	37	1	151237258	151237258	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD4	5710	broad.mit.edu	37	1	151237258	151237258	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD2	79810	broad.mit.edu	37	5	71627022	71627022	+	Intron	SNP	G	C	C	rs41271121	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11596438	11596438	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11596438	11596438	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPLAD2	401494	broad.mit.edu	37	9	21011691	21011691	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPLAD2	401494	broad.mit.edu	37	9	21011691	21011691	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	89016693	89016693	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120723109	120723109	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120723109	120723109	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8486043	8486043	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8486043	8486043	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62278399	62278399	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157930976	157930976	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71139815	71139815	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71139815	71139815	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52359614	52359614	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52359614	52359614	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52359850	52359850	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGL	5836	broad.mit.edu	37	14	51390574	51390574	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9344799	9344799	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9305437	9305437	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9344799	9344799	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3A	5864	broad.mit.edu	37	19	18311291	18311291	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3A	5864	broad.mit.edu	37	19	18311291	18311291	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135920707	135920707	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135920707	135920707	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125782613	125782613	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125782613	125782613	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76251861	76251861	+	5'Flank	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76251861	76251861	+	5'Flank	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17695402	17695402	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17695402	17695402	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI2	10742	broad.mit.edu	37	X	17819310	17819310	+	Missense_Mutation	SNP	T	G	G	rs148385703	byFrequency	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36147113	36147113	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85785599	85785599	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF1	2889	broad.mit.edu	37	9	134505753	134505753	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF1	2889	broad.mit.edu	37	9	134505753	134505753	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173879407	173879407	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173879407	173879407	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130883567	130883567	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1C	255426	broad.mit.edu	37	5	179529266	179529266	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79324412	79324412	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79324412	79324412	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP2	10235	broad.mit.edu	37	11	64507637	64507638	+	Splice_Site	INS	-	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33783410	33783410	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33783410	33783410	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM11	54033	broad.mit.edu	37	21	15593400	15593400	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM5	10181	broad.mit.edu	37	3	50137833	50137833	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPJL	11317	broad.mit.edu	37	20	43940361	43940361	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314038	79314040	+	In_Frame_Del	DEL	TCT	-	-	rs139007123	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314038	79314040	+	In_Frame_Del	DEL	TCT	-	-	rs139007123	byFrequency	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103155820	103155820	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103160032	103160032	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103155820	103155820	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8424339	8424339	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85578243	85578243	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85578243	85578243	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198482528	198482528	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198482528	198482528	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117244221	117244221	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117248730	117248730	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117244221	117244221	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183885633	183885633	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183885633	183885633	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGR	5995	broad.mit.edu	37	10	86007125	86007125	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS1	5996	broad.mit.edu	37	1	192547444	192547444	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS1	5996	broad.mit.edu	37	1	192547444	192547445	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163043250	163043250	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163043250	163043250	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163172591	163172591	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163172591	163172591	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72985274	72985274	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72985274	72985274	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241161913	241161913	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241161913	241161913	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDD1	84236	broad.mit.edu	37	2	227731981	227731981	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDD1	84236	broad.mit.edu	37	2	227731981	227731981	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB2	23221	broad.mit.edu	37	8	22872180	22872180	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB2	23221	broad.mit.edu	37	8	22872180	22872180	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOT1	55288	broad.mit.edu	37	17	30538360	30538360	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	73026418	73026418	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104987816	104987816	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104927789	104927789	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87377099	87377099	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87377099	87377099	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF126P1	376412	broad.mit.edu	37	17	55123079	55123079	+	RNA	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104324449	104324449	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104324449	104324449	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30776107	30776107	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77600017	77600017	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77600017	77600017	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL13	6137	broad.mit.edu	37	16	89628715	89628716	+	Intron	DNP	CC	TT	TT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL13	6137	broad.mit.edu	37	16	89628715	89628716	+	Intron	DNP	CC	TT	TT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS15	6209	broad.mit.edu	37	19	1440170	1440170	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213445953	213445953	+	Silent	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGB	10325	broad.mit.edu	37	X	55745712	55745712	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGB	10325	broad.mit.edu	37	X	55745712	55745712	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7240734	7240734	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7240734	7240734	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSU1	6251	broad.mit.edu	37	10	16794725	16794725	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSU1	6251	broad.mit.edu	37	10	16794725	16794725	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTDR1	27156	broad.mit.edu	37	22	23482595	23482595	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTDR1	27156	broad.mit.edu	37	22	23482595	23482595	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN2	6253	broad.mit.edu	37	19	45991669	45991669	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN2	6253	broad.mit.edu	37	19	45991669	45991669	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107035616	107035616	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107035616	107035616	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55253145	55253145	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55253716	55253716	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55253145	55253145	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55253716	55253716	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32376218	32376218	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32376218	32376218	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33937437	33937437	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33937437	33937437	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38931276	38931276	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237802406	237802406	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237868661	237868661	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237948113	237948114	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237802406	237802406	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237868661	237868661	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947674	237947674	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237948113	237948114	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237955668	237955669	+	Intron	INS	-	GTGTGTGCGCGC	GTGTGTGCGCGC	rs10642784		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33873860	33873860	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33873871	33873871	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33955875	33955875	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34111908	34111908	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33873860	33873860	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33955875	33955875	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A8	6279	broad.mit.edu	37	1	153363077	153363077	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A8	6279	broad.mit.edu	37	1	153363077	153363077	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA2	6289	broad.mit.edu	37	11	18267162	18267162	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA2	6289	broad.mit.edu	37	11	18267162	18267162	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA4	6291	broad.mit.edu	37	11	18253001	18253001	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL3	27164	broad.mit.edu	37	18	76753743	76753743	+	Silent	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68312238	68312238	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAT1	6303	broad.mit.edu	37	X	23801932	23801932	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAT1	6303	broad.mit.edu	37	X	23801932	23801932	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200213973	200213973	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD1	23256	broad.mit.edu	37	14	31103135	31103135	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD1	23256	broad.mit.edu	37	14	31103135	31103135	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25670109	25670109	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25670109	25670109	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCMH1	22955	broad.mit.edu	37	1	41564600	41564600	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCMH1	22955	broad.mit.edu	37	1	41564600	41564600	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38743164	38743164	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38755306	38755306	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166900188	166900188	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166900188	166900188	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166201299	166201299	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123516161	123516161	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123516161	123516161	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62021000	62021000	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62022622	62022623	+	Intron	DNP	CC	AA	AA			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38593128	38593129	+	Intron	INS	-	G	G	rs34532982		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167168167	167168167	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167168167	167168167	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76895164	76895164	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4277430	4277430	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4277430	4277430	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71394318	71394318	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71394318	71394318	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC62	7095	broad.mit.edu	37	3	169693437	169693437	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC62	7095	broad.mit.edu	37	3	169693437	169693437	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169563083	169563083	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169563083	169563083	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG1	6406	broad.mit.edu	37	20	43837270	43837270	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185329518	185329518	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB10	5273	broad.mit.edu	37	18	61600477	61600477	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB10	5273	broad.mit.edu	37	18	61600477	61600477	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN2	83667	broad.mit.edu	37	1	28607141	28607141	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN2	83667	broad.mit.edu	37	1	28607141	28607141	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65820560	65820560	+	Frame_Shift_Del	DEL	T	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7325987	7325987	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46316238	46316238	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46316238	46316238	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA1	653509	broad.mit.edu	37	10	81372776	81372776	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249107312	249107312	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49160177	49160177	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146246016	146246016	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146246016	146246016	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3672716	3672716	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SILV	6490	broad.mit.edu	37	12	56347975	56347975	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SILV	6490	broad.mit.edu	37	12	56347975	56347975	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838954	100838954	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838954	100838954	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1	6494	broad.mit.edu	37	11	65417993	65417993	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1	6494	broad.mit.edu	37	11	65417993	65417993	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164712076	164712076	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164733519	164733519	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164712076	164712076	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKI	6497	broad.mit.edu	37	1	2234681	2234681	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159923368	159923368	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159923368	159923368	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A1	6554	broad.mit.edu	37	14	70244996	70244996	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A1	6554	broad.mit.edu	37	14	70244996	70244996	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103703714	103703714	+	Missense_Mutation	SNP	G	T	T	rs140050923		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103703714	103703714	+	Missense_Mutation	SNP	G	T	T	rs140050923		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44671860	44671860	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44671860	44671860	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25918620	25918620	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35333830	35333830	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35333830	35333830	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A5	6584	broad.mit.edu	37	5	131722482	131722482	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92911713	92911713	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92911713	92911713	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A40	55972	broad.mit.edu	37	7	87470973	87470973	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107323604	107323604	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107330835	107330835	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103017307	103017307	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103017307	103017307	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25677973	25677973	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25677973	25677973	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E1	79939	broad.mit.edu	37	19	16682240	16682240	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E3	55508	broad.mit.edu	37	12	69140237	69140237	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E3	55508	broad.mit.edu	37	12	69140237	69140237	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58031051	58031051	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46601279	46601279	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46601534	46601534	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46601279	46601279	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A11	201266	broad.mit.edu	37	17	71064076	71064077	+	Intron	INS	-	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A3	85414	broad.mit.edu	37	1	205631992	205631992	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A3	85414	broad.mit.edu	37	1	205631992	205631992	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162728850	162728850	+	Frame_Shift_Del	DEL	A	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72319075	72319075	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72420934	72420934	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72319075	72319075	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72420934	72420934	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74451873	74451873	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74451873	74451873	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27490147	27490147	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27490147	27490147	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24895481	24895481	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24895481	24895481	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32439304	32439304	+	Frame_Shift_Del	DEL	G	-	-	rs148720069	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32439304	32439304	+	Frame_Shift_Del	DEL	G	-	-	rs148720069	byFrequency	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101576622	101576622	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101560478	101560478	+	Splice_Site	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101576622	101576622	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	307848	307848	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49814442	49814442	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49814442	49814442	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A1	6529	broad.mit.edu	37	3	11059650	11059650	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A1	6529	broad.mit.edu	37	3	11059650	11059650	+	Silent	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170216672	170216672	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170216672	170216672	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21349976	21349976	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21350017	21350017	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144906014	144906014	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144906014	144906014	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLTM	79811	broad.mit.edu	37	15	59224503	59224503	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLTM	79811	broad.mit.edu	37	15	59224503	59224503	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD1	4086	broad.mit.edu	37	4	146461416	146461416	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAP1	60682	broad.mit.edu	37	6	71562317	71562318	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47632111	47632111	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK2	57223	broad.mit.edu	37	2	55808847	55808847	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK2	57223	broad.mit.edu	37	2	55808847	55808847	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130932731	130932731	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246093033	246093033	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127732150	127732150	+	3'UTR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127732150	127732150	+	3'UTR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD113-5	767565	broad.mit.edu	37	14	101402916	101402916	+	5'Flank	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD113-5	767565	broad.mit.edu	37	14	101402916	101402916	+	5'Flank	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-13	100033450	broad.mit.edu	37	15	25440127	25440127	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-17	100033455	broad.mit.edu	37	15	25449376	25449376	+	5'Flank	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25468213	25468213	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25475908	25475908	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-1	100033413	broad.mit.edu	37	15	25296538	25296538	+	5'Flank	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-1	100033413	broad.mit.edu	37	15	25296538	25296538	+	5'Flank	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25326358	25326358	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25200114	25200114	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX21	90203	broad.mit.edu	37	20	44469907	44469908	+	Frame_Shift_Ins	INS	-	C	C	rs11477383		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX8	29886	broad.mit.edu	37	7	2309411	2309411	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	603047	603047	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140L	93349	broad.mit.edu	37	2	231193365	231193365	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795241	142795241	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795241	142795241	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52943162	52943162	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52943162	52943162	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA21	374955	broad.mit.edu	37	1	16727321	16727321	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA21	374955	broad.mit.edu	37	1	16727321	16727321	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE3	441272	broad.mit.edu	37	7	99913228	99913228	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE5	442590	broad.mit.edu	37	7	75123482	75123482	+	5'Flank	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220333302	220333302	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220333307	220333307	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG20	23111	broad.mit.edu	37	13	36909952	36909952	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG20	23111	broad.mit.edu	37	13	36909952	36909952	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK7	84651	broad.mit.edu	37	5	147693664	147693664	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK7	84651	broad.mit.edu	37	5	147693664	147693664	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136314883	136314883	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14156956	14156956	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648590	55648590	+	5'Flank	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55653326	55653326	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648590	55648590	+	5'Flank	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55653326	55653326	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158592678	158592678	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158592678	158592678	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65246605	65246605	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC1	10558	broad.mit.edu	37	9	94794786	94794786	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC1	10558	broad.mit.edu	37	9	94794786	94794786	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30721220	30721220	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30721220	30721220	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	104942528	104942528	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	104942528	104942528	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54707730	54707730	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54707730	54707730	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57105907	57105907	+	5'Flank	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57105907	57105907	+	5'Flank	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR4	6754	broad.mit.edu	37	20	23016252	23016252	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR4	6754	broad.mit.edu	37	20	23016252	23016252	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52662456	52662456	+	RNA	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52662456	52662456	+	RNA	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST14	6768	broad.mit.edu	37	11	130058061	130058061	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST14	6768	broad.mit.edu	37	11	130058061	130058061	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53028764	53028764	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL1	6482	broad.mit.edu	37	8	134478232	134478232	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL1	6482	broad.mit.edu	37	8	134478232	134478232	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL5	8869	broad.mit.edu	37	2	86090336	86090336	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL5	8869	broad.mit.edu	37	2	86090336	86090336	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107460211	107460211	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104098343	104098343	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104098343	104098343	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136341849	136341850	+	Intron	INS	-	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136341849	136341850	+	Intron	INS	-	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68437019	68437019	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47761390	47761390	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47761390	47761390	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32C	282974	broad.mit.edu	37	10	134059451	134059451	+	Missense_Mutation	SNP	C	A	A	rs142282211		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32C	282974	broad.mit.edu	37	10	134059451	134059451	+	Missense_Mutation	SNP	C	A	A	rs142282211		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38	11329	broad.mit.edu	37	6	36467534	36467534	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38	11329	broad.mit.edu	37	6	36467534	36467534	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML1	9399	broad.mit.edu	37	15	74281318	74281318	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48896839	48896839	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48896839	48896839	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74476122	74476122	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74476122	74476122	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37076792	37076792	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37076792	37076792	+	Intron	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70515570	70515570	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70515570	70515570	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70592821	70592821	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48033872	48033872	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48033872	48033872	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31573433	31573433	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31573433	31573433	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT3H	8464	broad.mit.edu	37	6	44982434	44982434	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SURF4	6836	broad.mit.edu	37	9	136230446	136230446	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SURF4	6836	broad.mit.edu	37	9	136230446	136230446	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149883572	149883572	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75469694	75469694	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75469694	75469694	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYAP1	94056	broad.mit.edu	37	X	16773137	16773137	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYAP1	94056	broad.mit.edu	37	X	16773137	16773137	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32630480	32630480	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	8056639	8056639	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	8056639	8056639	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN2	8407	broad.mit.edu	37	1	159890305	159890305	+	5'UTR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160031764	160031764	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R8	50836	broad.mit.edu	37	12	10959722	10959722	+	5'Flank	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13567750	13567750	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85446428	85446428	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85446428	85446428	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF12	6938	broad.mit.edu	37	15	57525012	57525012	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF12	6938	broad.mit.edu	37	15	57525012	57525012	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114925681	114925681	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114925681	114925681	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96136994	96136994	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96136994	96136994	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10	6953	broad.mit.edu	37	6	167796236	167796236	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35108431	35108431	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD10	126668	broad.mit.edu	37	1	154516365	154516365	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD4	7004	broad.mit.edu	37	12	3120264	3120264	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD4	7004	broad.mit.edu	37	12	3120264	3120264	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TENC1	23371	broad.mit.edu	37	12	53449281	53449281	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20859894	20859894	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20871392	20871392	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20859894	20859894	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERF2	7014	broad.mit.edu	37	16	69391330	69391330	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERF2	7014	broad.mit.edu	37	16	69391330	69391330	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1258782	1258782	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30703478	30703478	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30703478	30703478	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFB2M	64216	broad.mit.edu	37	1	246719866	246719866	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115624256	115624256	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115624256	115624256	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105890202	105890202	+	Intron	SNP	A	C	C	rs41280607	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2375094	2375094	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2375094	2375094	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43768305	43768305	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43778909	43778909	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43768305	43768305	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43778909	43778909	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP6	152815	broad.mit.edu	37	4	76452076	76452076	+	Intron	SNP	G	A	A	rs143552221	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEG	51298	broad.mit.edu	37	19	362338	362338	+	Silent	SNP	G	A	A	rs145779146	byFrequency;by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134623	128134623	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134623	128134623	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122769970	122769970	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOP1	7064	broad.mit.edu	37	19	2790467	2790467	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOP1	7064	broad.mit.edu	37	19	2790467	2790467	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11509422	11509422	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156381703	156381703	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156381703	156381703	+	Silent	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPRL	261726	broad.mit.edu	37	1	168165948	168165948	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPRL	261726	broad.mit.edu	37	1	168165948	168165948	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60690040	60690040	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105361663	105361663	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105361663	105361663	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165788877	165788877	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165788877	165788877	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106C	79022	broad.mit.edu	37	12	48358151	48358151	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106C	79022	broad.mit.edu	37	12	48358151	48358151	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129694057	129694057	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130184285	130184285	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129694057	129694057	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130184285	130184285	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM176B	28959	broad.mit.edu	37	7	150488637	150488637	+	Silent	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184C	55751	broad.mit.edu	37	4	148554839	148554839	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184C	55751	broad.mit.edu	37	4	148554839	148554839	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48741764	48741764	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48741764	48741764	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15470622	15470622	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39A	55254	broad.mit.edu	37	3	119155826	119155826	+	Splice_Site	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39A	55254	broad.mit.edu	37	3	119155826	119155826	+	Splice_Site	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM49	81671	broad.mit.edu	37	17	57917065	57917065	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM49	81671	broad.mit.edu	37	17	57917065	57917065	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIGD2	126259	broad.mit.edu	37	19	4294546	4294546	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68699137	68699137	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS13	84000	broad.mit.edu	37	11	117789096	117789096	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS13	84000	broad.mit.edu	37	11	117789096	117789096	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83424682	83424682	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83424682	83424682	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170858355	170858355	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175063368	175063368	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175097583	175097583	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175063368	175063368	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175331897	175331897	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175331897	175331897	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP3A	7156	broad.mit.edu	37	17	18193881	18193881	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577551	7577551	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186327834	186327834	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186327834	186327834	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10969905	10969905	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10969905	10969905	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17204079	17204079	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17204079	17204079	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72955931	72955931	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72955931	72955931	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189022242	189022242	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189022242	189022242	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230679754	230679754	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230679754	230679754	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP6	7205	broad.mit.edu	37	7	100470537	100470537	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49719372	49719372	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49719372	49719372	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38266459	38266459	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38266459	38266459	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45860723	45860723	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49684472	49684472	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98533224	98533224	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98533224	98533224	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142481923	142481925	+	Intron	DEL	CAA	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99689320	99689320	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY1	7258	broad.mit.edu	37	Y	9305870	9305870	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY1	7258	broad.mit.edu	37	Y	9305870	9305870	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY2	64591	broad.mit.edu	37	Y	6115581	6115581	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY2	64591	broad.mit.edu	37	Y	6115581	6115581	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39178787	39178787	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39178787	39178787	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC22	55001	broad.mit.edu	37	1	55266541	55266541	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC22	55001	broad.mit.edu	37	1	55266541	55266541	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47256494	47256494	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47256494	47256495	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91077032	91077032	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89323698	89323698	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117618733	117618733	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117618733	117618733	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80741163	80741163	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80741163	80741163	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL1	25809	broad.mit.edu	37	22	43465872	43465872	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167754837	167754837	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167754837	167754837	+	Silent	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179497651	179497651	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179550274	179550274	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179574231	179574231	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592239	179592239	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179639767	179639767	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179660023	179660023	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179664702	179664702	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179395627	179395627	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179497651	179497651	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179550274	179550274	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179574231	179574231	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592239	179592239	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179639767	179639767	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179660023	179660023	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG2	27175	broad.mit.edu	37	17	40818442	40818442	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG2	27175	broad.mit.edu	37	17	40818442	40818442	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP3	10426	broad.mit.edu	37	13	113223609	113223609	+	Intron	SNP	A	G	G	rs34251263	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYK2	7297	broad.mit.edu	37	19	10463007	10463007	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYK2	7297	broad.mit.edu	37	19	10463007	10463007	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D3	7323	broad.mit.edu	37	4	103718493	103718493	+	3'UTR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D3	7323	broad.mit.edu	37	4	103718493	103718493	+	3'UTR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43258422	43258422	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170911873	170911873	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTF	7343	broad.mit.edu	37	17	42286812	42286812	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTF	7343	broad.mit.edu	37	17	42286812	42286812	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGP2	7360	broad.mit.edu	37	2	64069408	64069427	+	Intron	DEL	GTGGGTGGTTTGGAAGTGGA	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54305855	54305855	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54306827	54306827	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54307661	54307661	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54528704	54528704	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54305855	54305855	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54306827	54306827	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54307661	54307661	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54528704	54528704	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158922352	158922352	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158922352	158922352	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCC	55245	broad.mit.edu	37	20	33891681	33891681	+	3'UTR	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216052133	216052133	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216219937	216219937	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216348530	216348530	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216501001	216501001	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216052133	216052133	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216348530	216348530	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216501001	216501001	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58285630	58285630	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58285630	58285630	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78205041	78205041	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61597820	61597820	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76817977	76817977	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76817977	76817977	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75289573	75289573	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75289573	75289573	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41000347	41000347	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41000347	41000347	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41025489	41025489	+	Intron	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41064757	41064757	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	116660678	116660678	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22453013	22453013	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32391465	32391465	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32398891	32398891	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43978284	43978284	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50980063	50980063	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	61311184	61311184	+	IGR	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	71539308	71539308	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116988636	116988636	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13632013	13632013	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22335140	22335140	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48454225	48454225	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49123063	49123063	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49867172	49867173	+	IGR	DNP	GG	TT	TT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55199527	55199527	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259182	55259182	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55782750	55782750	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783287	55783287	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59259875	59259875	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129501309	129501309	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38597318	38597318	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43965227	43965227	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61626169	61626169	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177015	88177015	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97296409	97296409	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	20138822	20138822	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82246985	82246985	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823162	90823162	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443914	19443914	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084974	20084974	+	IGR	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45331369	45331369	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49840828	49840828	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20457392	20457392	+	IGR	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22646788	22646788	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21363302	21363302	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489664	32489664	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55817628	55817628	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76912219	76912219	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42002292	42002292	+	IGR	SNP	G	T	T	rs117660865	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60374193	60374193	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14378528	14378528	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901451	41901451	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	47902	47902	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22398364	22398364	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22496613	22496613	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28388067	28388067	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29281583	29281583	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36988387	36988387	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43780575	43780575	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	48297999	48297999	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903732	148903732	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149095306	149095306	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152717112	152717112	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193726198	193726198	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21763068	21763068	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219706368	219706368	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220490376	220490376	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233971952	233971952	+	IGR	SNP	T	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248789358	248789358	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96856232	96856232	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6195997	6195997	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614579	10614579	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181729	11181729	+	IGR	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16953543	16953543	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	30443013	30443013	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34986571	34986571	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105387845	105387845	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584012	146584012	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	172373976	172373976	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	183936186	183936186	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426576	81426576	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	85543639	85543639	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92031180	92031180	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15416834	15416834	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161047500	161047500	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166408930	166408930	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	39400769	39400769	+	IGR	DEL	T	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75420427	75420427	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88366823	88366823	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116685803	116685803	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117115740	117115740	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145768509	145768509	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	387386	387386	+	IGR	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70172738	70172738	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70212481	70212481	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9390541	9390541	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	118988270	118988270	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456344	165456344	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39721531	39721531	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	52709970	52709970	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	61128432	61128432	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7372885	7372885	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75206503	75206503	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	83042591	83042591	+	IGR	DEL	A	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	132593293	132593293	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160134151	160134151	+	IGR	SNP	C	T	T	rs139439190	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39967349	39967349	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50865773	50865773	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81084035	81084035	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85139998	85139998	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86796381	86796381	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634198	108634198	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124121274	124121274	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132854217	132854217	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	32511926	32511926	+	IGR	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695177	38695177	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56373292	56373292	+	IGR	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56717579	56717579	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57076677	57076677	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216650	57216650	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217336	57217336	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894660	63894660	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64551054	64551054	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6975906	6975906	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194409	88194409	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92099512	92099512	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127086252	127086252	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43126319	43126319	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54452233	54452233	+	IGR	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2875467	2875467	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689325	30689325	+	IGR	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689464	30689464	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44084168	44084168	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106296793	106296793	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106843773	106843773	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	119344764	119344764	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136744393	136744393	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144713002	144713002	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52635498	52635498	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011941	58011941	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61999498	61999498	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78578933	78578934	+	IGR	DNP	GG	CT	CT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92478258	92478258	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92479465	92479465	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14044072	14044072	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	17053460	17053460	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	25511064	25511064	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	116660678	116660678	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22453013	22453013	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30806649	30806649	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32391465	32391465	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37626483	37626483	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42776090	42776090	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43978284	43978284	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	71539308	71539308	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116988636	116988636	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119474923	119474923	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13632013	13632013	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13778647	13778647	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22335140	22335140	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48454225	48454225	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49123063	49123063	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854716	49854716	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49867172	49867173	+	IGR	DNP	GG	TT	TT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55199451	55199451	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55199527	55199527	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259182	55259182	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55782750	55782750	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783287	55783287	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55838884	55838884	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59259875	59259875	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127350840	127350840	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129498214	129498214	+	IGR	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129501309	129501309	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	32107206	32107206	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	37935611	37935611	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38597318	38597318	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43965227	43965227	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61626169	61626169	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167691	8167691	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177015	88177015	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97296409	97296409	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	20138822	20138822	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52888527	52888527	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823162	90823162	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084974	20084974	+	IGR	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45331369	45331369	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49840828	49840828	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20482006	20482006	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140196	21140196	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34581929	34581929	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55817628	55817628	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76912219	76912219	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42002292	42002292	+	IGR	SNP	G	T	T	rs117660865	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60374193	60374193	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14378528	14378528	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29305752	29305752	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901451	41901451	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	47902	47902	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22398364	22398364	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22496613	22496613	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29281583	29281583	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36988387	36988387	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43780575	43780575	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	48297999	48297999	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111390758	111390758	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903327	148903327	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903732	148903732	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149095306	149095306	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193726198	193726198	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219706368	219706368	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220490376	220490376	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233971952	233971952	+	IGR	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	53856074	53856074	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	62120557	62120557	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89703312	89703312	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96856232	96856232	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49747276	49747276	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6195997	6195997	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900950	14900950	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16953543	16953543	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	30443013	30443013	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34986571	34986571	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105387845	105387845	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	111391606	111391606	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124520296	124520296	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139169519	139169519	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584012	146584012	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	172373976	172373976	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566524	17566524	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	183936186	183936186	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	32048125	32048125	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52797936	52797936	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58688095	58688095	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81422792	81422792	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424130	81424131	+	IGR	INS	-	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	85543639	85543639	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872924	91872924	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103782135	103782135	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103782474	103782474	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122380031	122380031	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161047500	161047500	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166408930	166408930	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	39400769	39400769	+	IGR	DEL	T	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	42383693	42383693	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75420427	75420427	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88366823	88366823	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104493420	104493420	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105128376	105128376	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116685803	116685803	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131416000	131416000	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145768509	145768509	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190394077	190394077	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	42288355	42288355	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68416522	68416522	+	IGR	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	118988270	118988270	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	145108956	145108956	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456344	165456344	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39721531	39721531	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	52709970	52709970	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	61128432	61128432	+	IGR	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75206503	75206503	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	83042591	83042591	+	IGR	DEL	A	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	132593293	132593293	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29236817	29236817	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39967349	39967349	+	IGR	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50865773	50865773	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81084035	81084035	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85139998	85139998	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86796381	86796381	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124121274	124121274	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132854217	132854217	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	32511926	32511926	+	IGR	SNP	A	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695177	38695177	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665272	56665272	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57064519	57064519	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216650	57216650	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894660	63894660	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6975906	6975906	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194409	88194409	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92099512	92099512	+	IGR	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111821750	111821750	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43126319	43126319	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54452233	54452233	+	IGR	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58152876	58152876	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70856536	70856536	+	IGR	SNP	G	T	T	rs144634897	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2875467	2875467	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689325	30689325	+	IGR	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689464	30689464	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66513271	66513271	+	IGR	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88990344	88990344	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100446130	100446130	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106296793	106296793	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106843773	106843773	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	119344764	119344764	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743472	136743472	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136744393	136744393	+	IGR	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701516	145701516	+	IGR	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	44335377	44335377	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011941	58011941	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61999498	61999498	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64770916	64770916	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78578933	78578934	+	IGR	DNP	GG	CT	CT			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92478258	92478258	+	IGR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92479465	92479465	+	IGR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97232931	97232931	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14044072	14044072	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	17053460	17053460	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	25511064	25511064	+	IGR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28479952	28479952	+	IGR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28659900	28659900	+	IGR	SNP	T	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAPB	9217	broad.mit.edu	37	20	57015900	57015900	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAPB	9217	broad.mit.edu	37	20	57015900	57015900	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VARS	7407	broad.mit.edu	37	6	31748352	31748352	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTXP7	391518	broad.mit.edu	37	3	21448018	21448018	+	RNA	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIP	7432	broad.mit.edu	37	6	153078346	153078346	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIP	7432	broad.mit.edu	37	6	153078346	153078346	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62232916	62232916	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134095249	134095249	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134095249	134095249	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38836631	38836631	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38948930	38948930	+	5'Flank	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54610349	54610349	+	5'UTR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTI1A	143187	broad.mit.edu	37	10	114428028	114428028	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTI1A	143187	broad.mit.edu	37	10	114428028	114428028	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98823026	98823026	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98853298	98853298	+	Intron	DEL	C	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98823026	98823026	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6166949	6166949	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71176999	71176999	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71176999	71176999	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9532031	9532031	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20153619	20153619	+	Missense_Mutation	SNP	C	A	A	rs146380332		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20153619	20153619	+	Missense_Mutation	SNP	C	A	A	rs146380332		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110428388	110428388	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110428388	110428388	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167240287	167240287	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167240287	167240287	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228788697	228788697	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228788697	228788697	+	3'UTR	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54446673	54446673	+	Silent	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68352354	68352354	+	RNA	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR93	56964	broad.mit.edu	37	15	90278900	90278900	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR93	56964	broad.mit.edu	37	15	90278900	90278900	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141416082	141416082	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141416082	141416082	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC11	259239	broad.mit.edu	37	20	44278014	44278014	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC11	259239	broad.mit.edu	37	20	44278014	44278014	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFS1	7466	broad.mit.edu	37	4	6303098	6303099	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF3	644150	broad.mit.edu	37	7	29928925	29928925	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF3	644150	broad.mit.edu	37	7	29928925	29928925	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP1	8840	broad.mit.edu	37	8	134232797	134232797	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP1	8840	broad.mit.edu	37	8	134232797	134232797	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68620705	68620705	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68620705	68620705	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	970256	970256	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	970256	970256	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT10B	7480	broad.mit.edu	37	12	49362003	49362003	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT10B	7480	broad.mit.edu	37	12	49362003	49362003	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT7B	7477	broad.mit.edu	37	22	46319011	46319011	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32413610	32413610	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32413610	32413610	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168550295	168550295	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168550295	168550295	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168100642	168100642	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168100642	168100642	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21823962	21823962	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17353367	17353367	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17353367	17353367	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183474581	183474581	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44624661	44624661	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44624661	44624661	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YME1L1	10730	broad.mit.edu	37	10	27437999	27437999	+	Intron	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135781097	135781097	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135781097	135781097	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167078466	167078466	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167078466	167078466	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114057870	114057870	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114057870	114057870	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22837737	22837737	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22837737	22837737	+	Silent	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12C	85463	broad.mit.edu	37	11	110035851	110035851	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12C	85463	broad.mit.edu	37	11	110035851	110035851	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H18	124245	broad.mit.edu	37	16	88653008	88653008	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H18	124245	broad.mit.edu	37	16	88653008	88653008	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1L	92092	broad.mit.edu	37	7	138713464	138713464	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1L	92092	broad.mit.edu	37	7	138713464	138713464	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52981763	52981763	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52981763	52981763	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC1	29800	broad.mit.edu	37	16	67441686	67441686	+	5'UTR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC1	29800	broad.mit.edu	37	16	67441686	67441686	+	5'UTR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31810791	31810791	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31810791	31810791	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767721	77767721	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767721	77767721	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP37	7539	broad.mit.edu	37	9	115819008	115819008	+	5'Flank	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE28	57732	broad.mit.edu	37	4	2307157	2307157	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE28	57732	broad.mit.edu	37	4	2307157	2307157	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704107	52704107	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704107	52704107	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108713	147108713	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108910	147108910	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108987	147108987	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108713	147108713	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108910	147108910	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108987	147108987	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND10	51364	broad.mit.edu	37	3	50380531	50380531	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND10	51364	broad.mit.edu	37	3	50380531	50380531	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF266	10781	broad.mit.edu	37	19	9530647	9530647	+	5'Flank	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF268	10795	broad.mit.edu	37	12	133780602	133780602	+	Frame_Shift_Del	DEL	A	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87968870	87968870	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87968870	87968870	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464027	2464027	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464027	2464027	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21792502	21792502	+	5'UTR	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF443	10224	broad.mit.edu	37	19	12540930	12540930	+	3'UTR	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF540	163255	broad.mit.edu	37	19	38089281	38089281	+	5'UTR	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF540	163255	broad.mit.edu	37	19	38089281	38089281	+	5'UTR	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37903769	37903769	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37903769	37903769	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144732931	144732931	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91406850	91406850	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91406850	91406850	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40772612	40772612	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40772612	40772612	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF697	90874	broad.mit.edu	37	1	120165639	120165639	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57528739	57528739	+	Missense_Mutation	SNP	G	T	T	rs147112692	by1000genomes	TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955524	113955524	+	Missense_Mutation	SNP	T	C	C	rs143330045		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955524	113955524	+	Missense_Mutation	SNP	T	C	C	rs143330045		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT6	54680	broad.mit.edu	37	1	86123355	86123355	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048630	238048630	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048630	238048630	+	Intron	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048739	238048739	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38028495	38028495	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38028501	38028501	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38028504	38028504	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38031516	38031516	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38031554	38031554	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38028501	38028501	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38031516	38031516	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38031554	38031554	+	Silent	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN20	7579	broad.mit.edu	37	1	33954745	33954745	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN20	7579	broad.mit.edu	37	1	33954745	33954745	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113644495	113644495	+	5'Flank	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78098634	78098634	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78098634	78098634	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30902699	30902699	+	Intron	SNP	G	T	T	rs927454		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31292285	31292285	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22237423	22237423	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22372790	22372790	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22631522	22631522	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20682423	20682423	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23692374	23692374	+	5'UTR	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32070545	32070545	+	5'Flank	DEL	C	-	-			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66989	66989	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25755821	25755821	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25032479	25032479	+	Intron	SNP	C	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24116576	24116576	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143210182	143210182	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186696491	186696491	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89292485	89292485	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89586710	89586710	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044046	90044046	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90049668	90049668	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90085921	90085921	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90091413	90091413	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96593003	96593003	+	RNA	SNP	T	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	160286747	160286747	+	RNA	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24171164	24171164	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142242784	142242784	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142250802	142250802	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471314	142471314	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143447512	143447512	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12493827	12493828	+	Intron	INS	-	C	C			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42949704	42949704	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30902699	30902699	+	Intron	SNP	G	T	T	rs927454		TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58765984	58765984	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	24515869	24515869	+	RNA	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22237423	22237423	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22372790	22372790	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22631522	22631522	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102291833	102291833	+	Silent	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20682423	20682423	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23692374	23692374	+	5'UTR	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32070545	32070545	+	5'Flank	DEL	C	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25755821	25755821	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24999998	24999998	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24116576	24116576	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143210182	143210182	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	151988103	151988103	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186696491	186696491	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	203044504	203044504	+	Intron	DEL	G	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89586710	89586710	+	Intron	SNP	G	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90049668	90049668	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90085921	90085921	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90091413	90091413	+	Intron	SNP	G	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96593003	96593003	+	RNA	SNP	T	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12299297	12299297	+	RNA	SNP	C	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24171164	24171164	+	Intron	SNP	T	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142242784	142242784	+	Intron	SNP	G	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142250802	142250802	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142456569	142456570	+	Intron	DEL	GA	-	-			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471314	142471314	+	Intron	SNP	C	A	A			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143447512	143447512	+	Intron	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38384821	38384821	+	Intron	SNP	A	T	T			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12493827	12493828	+	Intron	INS	-	C	C			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78969058	78969058	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1592-01A-01W-0928-08	TCGA-55-1592-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
