Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AAK1	22848	broad.mit.edu	37	2	69869993	69869993	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57221273	57221273	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67188636	67188636	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB6	10058	broad.mit.edu	37	2	220078284	220078284	+	Intron	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89386810	89386810	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACRC	93953	broad.mit.edu	37	X	70824260	70824260	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL5	51703	broad.mit.edu	37	10	114168079	114168079	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN4	81	broad.mit.edu	37	19	39219684	39219684	+	Missense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106091458	106091458	+	RNA	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106136287	106136287	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106801224	106801224	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128797440	128797440	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25044490	25044490	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24799281	24799281	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRH	141	broad.mit.edu	37	3	119306535	119306535	+	Missense_Mutation	SNP	G	T	T	rs150984649	byFrequency	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150817035	150817035	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47688628	47688628	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105410751	105410751	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159036171	159036171	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42891625	42891625	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74280900	74280901	+	Intron	INS	-	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH2	217	broad.mit.edu	37	12	112223066	112223066	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD2	271	broad.mit.edu	37	1	110168726	110168727	+	Intron	DNP	GG	AA	AA			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41519378	41519378	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41574379	41574379	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD33	341405	broad.mit.edu	37	12	52281933	52281933	+	5'UTR	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101514344	101514344	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69300292	69300292	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1M1	8907	broad.mit.edu	37	19	16309028	16309028	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83360460	83360460	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176903371	176903371	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4A	115201	broad.mit.edu	37	X	107397006	107397006	+	3'UTR	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160049494	160049494	+	Silent	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25276056	25276056	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119504761	119504761	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67515078	67515078	+	5'UTR	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	76903695	76903695	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVIL	10677	broad.mit.edu	37	12	58201289	58201289	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11058219	11058219	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102994958	102994958	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171509216	171509216	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56553688	56553688	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79793852	79793852	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43291968	43291968	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41256153	41256153	+	Missense_Mutation	SNP	C	G	G	rs80356991		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	80001218	80001218	+	Silent	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD17	388419	broad.mit.edu	37	17	72356359	72356359	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103174509	103174509	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105974215	105974215	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128191482	128191482	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf49	79096	broad.mit.edu	37	11	47179382	47179382	+	Silent	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60574588	60574588	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf42	79736	broad.mit.edu	37	17	29226112	29226112	+	3'UTR	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf62	79415	broad.mit.edu	37	17	80404609	80404609	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf75	64149	broad.mit.edu	37	17	30668352	30668353	+	Intron	INS	-	GAG	GAG			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf28	126321	broad.mit.edu	37	19	3551133	3551133	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf194	127003	broad.mit.edu	37	1	109649765	109649765	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf79	140856	broad.mit.edu	37	20	18794374	18794374	+	5'UTR	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192635485	192635485	+	Silent	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146617872	146617872	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146648137	146648137	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715261	165715261	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf62	81688	broad.mit.edu	37	6	24706384	24706384	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf26	79034	broad.mit.edu	37	7	6634192	6634192	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf41	138199	broad.mit.edu	37	9	77599827	77599827	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA4	762	broad.mit.edu	37	17	58235523	58235523	+	Intron	DEL	G	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1270924	1270924	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALU	813	broad.mit.edu	37	7	128399046	128399046	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2A	815	broad.mit.edu	37	5	149633053	149633053	+	Silent	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7737753	7737753	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T3	863	broad.mit.edu	37	16	88945809	88945809	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197534559	197534559	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC34	91057	broad.mit.edu	37	11	27362859	27362859	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31122154	31122154	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL18	6362	broad.mit.edu	37	17	34391745	34391745	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT3	7203	broad.mit.edu	37	1	156290753	156290753	+	Silent	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100858954	100858954	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137627557	137627557	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC37L1	55664	broad.mit.edu	37	9	4697785	4697785	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH16	1014	broad.mit.edu	37	16	66949248	66949248	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF1	10658	broad.mit.edu	37	11	47510315	47510315	+	Intron	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40126136	40126136	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87025842	87025842	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN7	1186	broad.mit.edu	37	16	1510965	1510965	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2	1196	broad.mit.edu	37	1	155239366	155239366	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72250894	72250894	+	Silent	SNP	G	T	T	rs143921310		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP2	55748	broad.mit.edu	37	18	72180861	72180861	+	Silent	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR1	10256	broad.mit.edu	37	1	26510616	26510616	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41463902	41463902	+	3'UTR	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1367757	1367757	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147259454	147259454	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103387223	103387223	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75836119	75836119	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109773411	109773411	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117027203	117027203	+	Splice_Site	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228159374	228159374	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47404299	47404299	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB1	1315	broad.mit.edu	37	11	14512211	14512211	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ6	51004	broad.mit.edu	37	14	74428033	74428033	+	Nonsense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36730750	36730750	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1388758	1388788	+	Frame_Shift_Del	DEL	GCGGAGTGCCCGCCTGCTCACACGTGCCGAC	-	-	rs112233131	byFrequency;by1000genomes	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17298965	17298965	+	3'UTR	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYAA	1409	broad.mit.edu	37	21	44592264	44592264	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113331070	113331070	+	Nonsense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43013285	43013286	+	Intron	INS	-	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52774146	52774146	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP39A1	51302	broad.mit.edu	37	6	46521643	46521643	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155011790	155011790	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15736890	15736890	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15739902	15739902	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169344796	169344796	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2D	79961	broad.mit.edu	37	1	111742456	111742456	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137363363	137363363	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80671943	80671943	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111904068	111904068	+	Intron	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1485864	1485864	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP5	9787	broad.mit.edu	37	14	55655984	55655984	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124335998	124335998	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118502310	118502310	+	Splice_Site	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21901534	21901534	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB14	79982	broad.mit.edu	37	4	100829754	100829754	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65855004	65855004	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNHD1	144132	broad.mit.edu	37	11	6523936	6523936	+	Intron	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83810352	83810352	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP1	1800	broad.mit.edu	37	16	89703427	89703427	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162879202	162879202	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154681260	154681260	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	97771617	97771617	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28970524	28970524	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88535135	88535135	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7572277	7572277	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56497598	56497598	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP8	1850	broad.mit.edu	37	11	1580240	1580240	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103060406	103060406	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207569584	207569584	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25720216	25720216	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78472507	78472507	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB10	100130771	broad.mit.edu	37	7	105223566	105223566	+	5'Flank	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82512739	82512739	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63176253	63176253	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6078144	6078144	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184041145	184041145	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF1	1997	broad.mit.edu	37	13	41518040	41518040	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107535706	107535707	+	Intron	INS	-	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL3	83401	broad.mit.edu	37	10	103988910	103988910	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97200325	97200325	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP44	23071	broad.mit.edu	37	9	102861021	102861021	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158528056	158528056	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC9	5393	broad.mit.edu	37	4	122728874	122728874	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133767772	133767772	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F7	2155	broad.mit.edu	37	13	113773001	113773001	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154157685	154157686	+	Frame_Shift_Ins	INS	-	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3C	10447	broad.mit.edu	37	7	121000097	121000097	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250450	177250450	+	Missense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM81B	153643	broad.mit.edu	37	5	94782234	94782234	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126370481	126370481	+	Silent	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8148175	8148175	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928384	15928384	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157766953	157766953	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157772151	157772151	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125107213	125107213	+	Silent	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155505252	155505252	+	3'UTR	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFBP2	83888	broad.mit.edu	37	4	15964142	15964142	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27939698	27939698	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34324175	34324175	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147007225	147007225	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216262478	216262478	+	Nonsense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169533408	169533408	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPGT	8790	broad.mit.edu	37	1	74671569	74671569	+	3'UTR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79334175	79334175	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39450532	39450532	+	Intron	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131216668	131216668	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975731	44975732	+	Nonsense_Mutation	DNP	CC	AG	AG			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4317155	4317155	+	Intron	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPB1	2553	broad.mit.edu	37	15	50593534	50593534	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46252429	46252429	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47163248	47163248	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT10	55568	broad.mit.edu	37	5	153792479	153792479	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT3	2591	broad.mit.edu	37	2	166615484	166615484	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52993844	52993844	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42003993	42003993	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58711090	58711090	+	5'UTR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB2L1	10399	broad.mit.edu	37	5	180668496	180668496	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20325935	20325935	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD1L	23171	broad.mit.edu	37	3	32207365	32207367	+	In_Frame_Del	DEL	TGT	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR115	221393	broad.mit.edu	37	6	47681478	47681478	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR63	81491	broad.mit.edu	37	6	97246334	97246334	+	3'UTR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47424388	47424388	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSR	2936	broad.mit.edu	37	8	30537216	30537216	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSR	2936	broad.mit.edu	37	8	30537223	30537223	+	Intron	SNP	C	T	T	rs145175255		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106558443	106558443	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119929411	119929411	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN1	1404	broad.mit.edu	37	5	82969179	82969179	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN3	57657	broad.mit.edu	37	1	155255611	155255611	+	Missense_Mutation	SNP	C	T	T	rs146290600	byFrequency	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC2	3066	broad.mit.edu	37	6	114274317	114274317	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83724072	83724072	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41008605	41008605	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93822027	93822027	+	Nonsense_Mutation	SNP	C	A	A	rs113614754	by1000genomes	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91851286	91851286	+	Silent	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100118840	100118840	+	Frame_Shift_Del	DEL	A	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIATL1	84641	broad.mit.edu	37	9	97191553	97191553	+	Intron	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIGD1A	25994	broad.mit.edu	37	3	42845736	42845736	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AM	8336	broad.mit.edu	37	6	27860906	27860906	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BM	8342	broad.mit.edu	37	6	27782008	27782008	+	5'Flank	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3H	8357	broad.mit.edu	37	6	27778233	27778233	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176314276	176314276	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKR1	284459	broad.mit.edu	37	19	37838716	37838716	+	Silent	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DPB1	3115	broad.mit.edu	37	6	33095889	33095889	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185959619	185959619	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26875276	26875276	+	Silent	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3B	9177	broad.mit.edu	37	11	113802055	113802055	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS12	57117	broad.mit.edu	37	4	106603997	106603997	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPCEF1	26034	broad.mit.edu	37	6	154587022	154587022	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	272870	272870	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF6	3664	broad.mit.edu	37	1	209961969	209961969	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7657947	7657947	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH3	57338	broad.mit.edu	37	16	87678370	87678370	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK3	256949	broad.mit.edu	37	19	8389370	8389370	+	Missense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KARS	3735	broad.mit.edu	37	16	75665654	75665654	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP3	30818	broad.mit.edu	37	2	96048258	96048258	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36788569	36788569	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD5	54442	broad.mit.edu	37	16	2757277	2757277	+	Intron	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106366562	106366562	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106368457	106368457	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34818306	34818306	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42440148	42440148	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43479488	43479488	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3A	11127	broad.mit.edu	37	5	132038516	132038516	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349800	36349800	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL15	80311	broad.mit.edu	37	X	24006107	24006107	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51380187	51380187	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186461616	186461616	+	3'UTR	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT15	3866	broad.mit.edu	37	17	39673396	39673396	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT8	3856	broad.mit.edu	37	12	53294507	53294507	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-4	85280	broad.mit.edu	37	17	39406130	39406130	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60885352	60885352	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183102584	183102584	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	33777701	33777701	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150004968	150004968	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBX1	10660	broad.mit.edu	37	10	102987012	102987012	+	3'UTR	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFP	10186	broad.mit.edu	37	13	39917907	39917907	+	3'UTR	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK3	114783	broad.mit.edu	37	19	49004582	49004582	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148009534	148009534	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148011136	148011137	+	Intron	INS	-	T	T	rs148901736	by1000genomes	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC595101	595101	broad.mit.edu	37	16	30347633	30347633	+	5'Flank	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22661206	22661206	+	RNA	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23248846	23248846	+	RNA	DEL	C	-	-	rs71815924		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62897172	62897172	+	Silent	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11913634	11913634	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141747008	141747008	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141812775	141812775	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170097929	170097929	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16B	90668	broad.mit.edu	37	14	24530760	24530760	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70502175	70502175	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745564	77745564	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235969480	235969480	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK15	225689	broad.mit.edu	37	8	144803088	144803088	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1810016	1810016	+	Missense_Mutation	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH2	51257	broad.mit.edu	37	19	8486948	8486948	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK3	4140	broad.mit.edu	37	14	103931921	103931921	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112776925	112776925	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD11	79157	broad.mit.edu	37	17	74734527	74734527	+	Silent	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20456695	20456695	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168325807	168325807	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55523613	55523613	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55523626	55523626	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON1A	84315	broad.mit.edu	37	3	49947983	49947984	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71377048	71377048	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56350741	56350741	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A8B	83661	broad.mit.edu	37	11	60482473	60482473	+	Intron	DEL	C	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P2	11209	broad.mit.edu	37	1	16976023	16976023	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17084116	17084116	+	Missense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8993565	8993565	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1104063	1104063	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16694647	16694647	+	Silent	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16694657	16694657	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27425147	27425147	+	Silent	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76564845	76564845	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76924924	76924924	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADK	65220	broad.mit.edu	37	1	1688055	1688055	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGS	162417	broad.mit.edu	37	17	42083115	42083115	+	Silent	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101710459	101710459	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16935131	16935131	+	5'UTR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134054882	134054882	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG	64151	broad.mit.edu	37	4	17839528	17839528	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB3	63941	broad.mit.edu	37	20	32246615	32246615	+	Missense_Mutation	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFL	4747	broad.mit.edu	37	8	24813515	24813515	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27062387	27062387	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGB	58157	broad.mit.edu	37	14	77732490	77732490	+	3'UTR	DEL	C	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103822455	103822455	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAP	79576	broad.mit.edu	37	X	119070117	119070117	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX2-2	4821	broad.mit.edu	37	20	21494245	21494245	+	Silent	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55452944	55452944	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160956049	160956049	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT1	4836	broad.mit.edu	37	17	43182161	43182162	+	Intron	INS	-	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26084384	26084384	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1	4864	broad.mit.edu	37	18	21136274	21136274	+	Missense_Mutation	SNP	T	C	C	rs77815278		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPPS	9520	broad.mit.edu	37	17	45695895	45695895	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	6012905	6012905	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1D1	9572	broad.mit.edu	37	17	38253497	38253497	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR3C1	2908	broad.mit.edu	37	5	142712224	142712224	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50318349	50318349	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79423666	79423666	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176637505	176637505	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156844018	156844018	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228469981	228469981	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78413148	78413148	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C3	138803	broad.mit.edu	37	9	107298956	107298956	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C5	138799	broad.mit.edu	37	9	107360999	107360999	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247110	248247110	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135509	55135509	+	Silent	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123810475	123810475	+	Frame_Shift_Del	DEL	C	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E2	119678	broad.mit.edu	37	11	5080543	5080543	+	Frame_Shift_Del	DEL	A	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58125914	58125914	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563785	55563785	+	Missense_Mutation	SNP	A	T	T	rs149902192		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31917965	31917965	+	Missense_Mutation	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX2	5015	broad.mit.edu	37	14	57268456	57268456	+	Silent	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3592814	3592814	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176563604	176563604	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34663923	34663923	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBXIP1	57326	broad.mit.edu	37	1	154919276	154919276	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140249915	140249915	+	Silent	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140188847	140188847	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140432448	140432448	+	Missense_Mutation	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140790303	140790303	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14666084	14666084	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145075778	145075778	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28815703	28815703	+	Silent	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC2	1912	broad.mit.edu	37	1	33832751	33832751	+	Silent	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27240044	27240044	+	Silent	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133851588	133851588	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21A	51317	broad.mit.edu	37	11	45971884	45971884	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKG2	5261	broad.mit.edu	37	16	30767768	30767768	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111564643	111564643	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS1	8554	broad.mit.edu	37	15	68378698	68378698	+	Frame_Shift_Del	DEL	G	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	229890361	229890361	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138478038	138478038	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209195472	209195472	+	Intron	SNP	G	T	T	rs71412492		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209218638	209218638	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIPSL	266971	broad.mit.edu	37	10	95719536	95719536	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25151777	25151777	+	Silent	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96018749	96018749	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155200618	155200618	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65208725	65208725	+	Silent	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161173128	161173128	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118199644	118199644	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA1	285848	broad.mit.edu	37	6	36262198	36262199	+	Intron	DNP	GG	TT	TT			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7622061	7622061	+	Silent	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14513734	14513734	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132010488	132010488	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130873059	130873059	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76794373	76794373	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49641825	49641826	+	Intron	DEL	AA	-	-	rs3032696		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12C	54776	broad.mit.edu	37	19	55607718	55607718	+	Intron	DEL	G	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R8	5511	broad.mit.edu	37	1	28167669	28167669	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94916567	94916567	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CA	5530	broad.mit.edu	37	4	101982170	101982170	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44586775	44586775	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	170020822	170020822	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6533790	6533790	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRL	5617	broad.mit.edu	37	6	22290538	22290538	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRNT	149830	broad.mit.edu	37	20	4713134	4713134	+	RNA	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762450	43762450	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA8	143471	broad.mit.edu	37	18	23731778	23731778	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN22	26191	broad.mit.edu	37	1	114400530	114400531	+	Intron	INS	-	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8436735	8436735	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158908958	158908958	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP3	9727	broad.mit.edu	37	16	570480	570480	+	Nonsense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IP	117177	broad.mit.edu	37	12	70149292	70149292	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109357154	109357154	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF1	2889	broad.mit.edu	37	9	134459980	134459980	+	Silent	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARA	5914	broad.mit.edu	37	17	38508718	38508718	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM46	166863	broad.mit.edu	37	4	155720435	155720435	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73657187	73657187	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163122243	163122243	+	Intron	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152300099	152300099	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN2	6019	broad.mit.edu	37	9	5300119	5300119	+	Silent	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144A	9781	broad.mit.edu	37	2	7170260	7170260	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79638956	79638956	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11342265	11342265	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21756020	21756020	+	5'Flank	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166944759	166944759	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP9	9136	broad.mit.edu	37	3	51972152	51972152	+	Missense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX2	860	broad.mit.edu	37	6	45514521	45514521	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39013721	39013721	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100B	6285	broad.mit.edu	37	21	48019476	48019476	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100P	6286	broad.mit.edu	37	4	6698502	6698503	+	Intron	INS	-	AGCCTGAAAA	AGCCTGAAAA	rs59772164		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92735313	92735313	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAR1A	56681	broad.mit.edu	37	10	71920695	71920695	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART1	9092	broad.mit.edu	37	11	65729186	65729186	+	5'UTR	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200213524	200213524	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBNO1	55206	broad.mit.edu	37	12	123801854	123801854	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARB1	949	broad.mit.edu	37	12	125279717	125279717	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	159604240	159604240	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166848264	166848264	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1A	6337	broad.mit.edu	37	12	6471155	6471155	+	Intron	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24C	9632	broad.mit.edu	37	10	75520491	75520491	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9379955	9379955	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185341888	185341888	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE2	5270	broad.mit.edu	37	2	224845215	224845215	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD7	80854	broad.mit.edu	37	4	140444545	140444545	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232534998	232534998	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A15	10166	broad.mit.edu	37	13	41379223	41379223	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A44	9673	broad.mit.edu	37	1	156177826	156177826	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85452051	85452051	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118475787	118475787	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168201116	168201116	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904667	144904667	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2056633	2056633	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11118587	11118587	+	Nonsense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88407960	88407960	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA1	81833	broad.mit.edu	37	6	88769165	88769165	+	Intron	DEL	A	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172643064	172643064	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHK2	56848	broad.mit.edu	37	19	49131413	49131430	+	Splice_Site	DEL	CTCCAGGTGCTGAACGGG	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55908978	55908978	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158624414	158624414	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158627368	158627368	+	Frame_Shift_Del	DEL	G	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SQLE	6713	broad.mit.edu	37	8	126011698	126011698	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30732065	30732065	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107460008	107460008	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD10	10809	broad.mit.edu	37	11	72465899	72465899	+	3'UTR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG2	8801	broad.mit.edu	37	3	67579481	67579481	+	Intron	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29997472	29997472	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72311626	72311626	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22B	55633	broad.mit.edu	37	6	37298895	37298895	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX2	55852	broad.mit.edu	37	17	62271159	62271159	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2C	7022	broad.mit.edu	37	20	55204644	55204644	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141812827	141812827	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100230991	100230991	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105924597	105924597	+	Frame_Shift_Del	DEL	C	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43585154	43585154	+	Splice_Site	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43779441	43779441	+	Silent	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIFAB	497189	broad.mit.edu	37	5	134785191	134785191	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35705476	35705476	+	Intron	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR2	7097	broad.mit.edu	37	4	154626147	154626147	+	Silent	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF2	9375	broad.mit.edu	37	13	100190023	100190023	+	Missense_Mutation	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCC1	23023	broad.mit.edu	37	3	129370423	129370423	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM120B	144404	broad.mit.edu	37	12	122212560	122212560	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM176B	28959	broad.mit.edu	37	7	150491059	150491059	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM192	201931	broad.mit.edu	37	4	166009711	166009711	+	Silent	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM55B	90809	broad.mit.edu	37	14	20927239	20927239	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM5	10329	broad.mit.edu	37	12	64202478	64202478	+	Missense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX4	56255	broad.mit.edu	37	20	7963206	7963206	+	Missense_Mutation	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175113397	175113397	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20138183	20138183	+	5'Flank	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140397023	140397023	+	5'UTR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189020308	189020308	+	Missense_Mutation	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP11	9321	broad.mit.edu	37	14	92441645	92441645	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV4	59341	broad.mit.edu	37	12	110226574	110226574	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112770552	112770552	+	5'UTR	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTD2	158427	broad.mit.edu	37	9	100388346	100388346	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43251531	43251531	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94839460	94839460	+	Intron	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219604893	219604893	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179585221	179585221	+	Missense_Mutation	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179598223	179598223	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1	55253	broad.mit.edu	37	7	66479459	66479459	+	Missense_Mutation	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC2	337867	broad.mit.edu	37	13	99992548	99992548	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42604830	42604830	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTFL1	642623	broad.mit.edu	37	11	89819902	89819902	+	Missense_Mutation	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A6	54578	broad.mit.edu	37	2	234602290	234602290	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69535446	69535446	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70346637	70346637	+	Intron	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK2	9706	broad.mit.edu	37	17	19720040	19720040	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54630576	54630576	+	Frame_Shift_Del	DEL	C	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76823389	76823389	+	Silent	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP45	85015	broad.mit.edu	37	6	99894011	99894011	+	Frame_Shift_Del	DEL	T	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111421884	111421884	+	IGR	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30450901	30450901	+	IGR	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38184638	38184638	+	IGR	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49012923	49012923	+	IGR	DEL	A	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56064414	56064414	+	IGR	DEL	A	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	113453563	113453563	+	IGR	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55196524	55196524	+	IGR	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19271267	19271267	+	IGR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23377671	23377671	+	IGR	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	36523632	36523632	+	IGR	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32618923	32618923	+	IGR	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22868565	22868565	+	IGR	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903281	148903281	+	IGR	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248457914	248457914	+	IGR	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	45246065	45246065	+	IGR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874164	29874164	+	IGR	DEL	C	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16909868	16909868	+	IGR	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35696888	35696888	+	IGR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179182300	179182300	+	IGR	SNP	A	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	29129287	29129287	+	IGR	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	32232710	32232710	+	IGR	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189309268	189309268	+	IGR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2787904	2787904	+	IGR	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133318939	133318939	+	IGR	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29068894	29068895	+	IGR	DNP	CC	AA	AA			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143854961	143854961	+	IGR	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9766229	9766229	+	IGR	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107360589	107360589	+	IGR	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863428	110863428	+	IGR	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864054	110864054	+	IGR	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	129464946	129464946	+	IGR	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295820	89295820	+	IGR	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13488898	13488898	+	IGR	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28485197	28485197	+	IGR	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28774341	28774341	+	IGR	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDR	7421	broad.mit.edu	37	12	48272943	48272943	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55429138	55429138	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36587934	36587934	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK2	65268	broad.mit.edu	37	9	96024896	96024896	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167833354	167833355	+	Intron	DNP	TG	CT	CT			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAF1	54739	broad.mit.edu	37	17	6665594	6665594	+	Intron	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H10	84872	broad.mit.edu	37	12	56514815	56514815	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31803458	31803458	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145156993	145156993	+	Missense_Mutation	SNP	T	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72050619	72050619	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81070971	81070971	+	Intron	SNP	T	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF16	7564	broad.mit.edu	37	8	146156498	146156498	+	Missense_Mutation	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF221	7638	broad.mit.edu	37	19	44471654	44471654	+	3'UTR	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF330	27309	broad.mit.edu	37	4	142152624	142152624	+	Silent	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF337	26152	broad.mit.edu	37	20	25667036	25667036	+	Silent	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464228	2464228	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF398	57541	broad.mit.edu	37	7	148873545	148873545	+	Intron	DEL	C	-	-			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF471	57573	broad.mit.edu	37	19	57027786	57027786	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57194508	57194508	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF577	84765	broad.mit.edu	37	19	52376970	52376970	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84525150	84525150	+	Missense_Mutation	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF732	654254	broad.mit.edu	37	4	289872	289872	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF791	163049	broad.mit.edu	37	19	12739912	12739912	+	Silent	SNP	C	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22952001	22952001	+	Silent	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT3	9326	broad.mit.edu	37	17	34842538	34842538	+	5'UTR	SNP	A	G	G			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30982513	30982513	+	Intron	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30930585	30930585	+	RNA	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89774426	89774426	+	Missense_Mutation	SNP	G	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80750317	80750317	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28549233	28549233	+	Intron	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8178412	8178412	+	Intron	SNP	T	C	C			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89326784	89326784	+	RNA	SNP	C	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89326825	89326825	+	RNA	SNP	G	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90249162	90249162	+	RNA	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142423320	142423320	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37779906	37779906	+	Intron	SNP	A	T	T			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65154392	65154392	+	Intron	SNP	C	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22747968	22747968	+	Intron	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
