Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARHGAP23	57636	genome.wustl.edu	37	17	36626102	36626102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	17	36626102	36626102	G	A	SNP	ARHGAP23	NM_020876.1	human	genbank	58_37c	+1	provisional	missense	c.1649	p.R550H	0.760	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7045461	7045461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	12	7045461	7045461	C	T	SNP	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	missense	c.1031	p.P344L	0.995	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
C20orf72	92667	genome.wustl.edu	37	20	17970619	17970619	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	20	17970619	17970619	G	A	SNP	C20orf72	ENST00000377704	human	ensembl	58_37c	+1	known	nonsense	c.549	p.W183*	1.000	NULL	NULL	-	no_errors
C9orf114	51490	genome.wustl.edu	37	9	131587304	131587304	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	9	131587304	131587304	C	G	SNP	C9orf114	NM_016390.2	human	genbank	58_37c	-1	validated	missense	c.664	p.E222Q	1.000	HMMPfam_DUF171,superfamily_Nucleic_acid_OB,superfamily_SSF75217	HMMPfam_DUF171,superfamily_Nucleic_acid_OB,superfamily_SSF75217	-	no_errors
CARD10	29775	genome.wustl.edu	37	22	37912135	37912135	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	22	37912135	37912135	G	A	SNP	CARD10	NM_014550.3	human	genbank	58_37c	-1	reviewed	nonsense	c.544	p.Q182*	0.992	NULL	HMMPfam_CARD,superfamily_DEATH_like,superfamily_SSF52540	-	no_errors
CEP135	9662	genome.wustl.edu	37	4	56883874	56883874	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	4	56883874	56883874	C	T	SNP	CEP135	NM_025009.3	human	genbank	58_37c	+1	validated	nonsense	c.2863	p.R955*	0.970	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors
ENOX2	10495	genome.wustl.edu	37	X	129769019	129769019	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	X	129769019	129769019	A	C	SNP	ENOX2	NM_182314.1	human	genbank	58_37c	-1	reviewed	missense	c.1445	p.L482R	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
ENSG00000232429	0	genome.wustl.edu	37	19	34080511	34080511	+	Silent	SNP	G	G	C	rs12609032	byCluster;byFrequency;by1000genomes;byHapmap	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	19	34080511	34080511	G	C	SNP	ENSG00000232429	ENST00000497298	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-34080511	NULL	1.000	-	-	-	no_coding_region:pseudogene
HDX	139324	genome.wustl.edu	37	X	83723943	83723943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	X	83723943	83723943	C	T	SNP	HDX	NM_144657.4	human	genbank	58_37c	-1	validated	missense	c.788	p.R263H	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
KLK12	43849	genome.wustl.edu	37	19	51535184	51535184	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	19	51535184	51535184	G	A	SNP	KLK12	NM_019598.2	human	genbank	58_37c	-1	reviewed	silent	c.405	p.T135	0.000	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LOC100287541	0	genome.wustl.edu	37	22	18842988	18842988	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	22	18842988	18842988	G	T	SNP	LOC100287541	XM_002344189.1	human	genbank	58_37c	+1	model	missense	c.104	p.C35F	0.003	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
MDM2	4193	genome.wustl.edu	37	12	69233129	69233129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	12	69233129	69233129	C	T	SNP	MDM2	NM_002392.3	human	genbank	58_37c	+1	reviewed	missense	c.994	p.R332C	1.000	HMMPfam_zf-RanBP	HMMPfam_zf-RanBP,PatternScan_ZF_RANBP2_1,HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,superfamily_RING/U-box	-	no_errors
MEP1A	4224	genome.wustl.edu	37	6	46803035	46803035	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	6	46803035	46803035	G	A	SNP	MEP1A	NM_005588.2	human	genbank	58_37c	+1	validated	silent	c.1833	p.L611	0.000	NULL	HMMPfam_MAM,HMMSmart_MAM,PatternScan_MAM_1,HMMPfam_Astacin,HMMPfam_MATH,HMMSmart_MATH,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,HMMPfam_EGF,HMMSmart_EGF,superfamily_Traf_like,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF55486,superfamily_SSF57196	-	no_errors
MRC2	9902	genome.wustl.edu	37	17	60765922	60765922	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	17	60765922	60765922	C	A	SNP	MRC2	NM_006039.3	human	genbank	58_37c	+1	validated	nonsense	c.3122	p.S1041*	0.866	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Lectin_C,HMMSmart_SM00034,PatternScan_LIPOCALIN,superfamily_Ricin B-like lectins,superfamily_Kringle-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
POFUT2	23275	genome.wustl.edu	37	21	46705636	46705636	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	21	46705636	46705636	G	A	SNP	POFUT2	NM_133635.4	human	genbank	58_37c	-1	validated	silent	c.339	p.L113	0.998	HMMPfam_O-FucT	HMMPfam_O-FucT	-	no_errors
PYGB	5834	genome.wustl.edu	37	20	25252034	25252034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	20	25252034	25252034	C	T	SNP	PYGB	NM_002862.3	human	genbank	58_37c	+1	reviewed	missense	c.440	p.S147L	1.000	HMMPfam_Phosphorylase,superfamily_SSF53756	HMMPfam_Phosphorylase,PatternScan_PHOSPHORYLASE,superfamily_SSF53756	-	no_errors
REV1	51455	genome.wustl.edu	37	2	100046338	100046338	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	2	100046338	100046338	G	C	SNP	REV1	NM_016316.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1511	p.S504*	1.000	HMMPfam_IMS,superfamily_DNA/RNA polymerases	HMMPfam_IMS,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain,superfamily_DNA/RNA polymerases	-	no_errors
SCN2A	6326	genome.wustl.edu	37	2	166179704	166179704	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	2	166179704	166179704	A	T	SNP	SCN2A	NM_001040142.1	human	genbank	58_37c	+1	reviewed	missense	c.1710	p.R570S	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SLC2A2	6514	genome.wustl.edu	37	3	170736326	170736326	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	3	170736326	170736326	A	G	SNP	SLC2A2	NM_000340.1	human	genbank	58_37c	-1	reviewed	silent	c.102	p.P34	0.991	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS_gen_substrate_transporter	-	no_errors
TPPP2	122664	genome.wustl.edu	37	14	21500171	21500171	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	14	21500171	21500171	A	G	SNP	TPPP2	NM_173846.4	human	genbank	58_37c	+1	validated	missense	c.448	p.T150A	0.006	HMMPfam_p25-alpha	HMMPfam_p25-alpha	-	no_errors
ZC3H12C	85463	genome.wustl.edu	37	11	110035921	110035921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a630ed59-dd23-45e1-aa16-4f7a98e32728	d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0	11	110035921	110035921	C	T	SNP	ZC3H12C	NM_033390.1	human	genbank	58_37c	+1	validated	missense	c.2111	p.P704L	0.176	NULL	NULL	-	no_errors
