Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADPRH	141	genome.wustl.edu	37	3	119306694	119306694	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	3	119306694	119306694	G	A	SNP	ADPRH	NM_001125.2	human	genbank	58_37c	+1	reviewed	missense	c.1043	p.G348E	0.166	superfamily_ADP-ribosylglycohydrolase	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase	-	no_errors
ANKRD11	29123	genome.wustl.edu	37	16	89349106	89349106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	16	89349106	89349106	C	T	SNP	ANKRD11	NM_013275.4	human	genbank	58_37c	-1	validated	missense	c.3844	p.E1282K	1.000	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ARHGEF2	9181	genome.wustl.edu	37	1	155921009	155921009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	155921009	155921009	C	T	SNP	ARHGEF2	NM_004723.3	human	genbank	58_37c	-1	validated	missense	c.2230	p.E744K	0.879	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
ATP9A	10079	genome.wustl.edu	37	20	50273503	50273503	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	20	50273503	50273503	C	T	SNP	ATP9A	NM_006045.1	human	genbank	58_37c	-1	validated	missense	c.1480	p.V494I	0.992	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
BMP15	9210	genome.wustl.edu	37	X	50659301	50659301	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	50659301	50659301	T	C	SNP	BMP15	NM_005448.2	human	genbank	58_37c	+1	reviewed	silent	c.873	p.C291	0.931	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501	HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501	-	no_errors
CACNB1	782	genome.wustl.edu	37	17	37347809	37347809	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	37347809	37347809	G	T	SNP	CACNB1	NM_000723.3	human	genbank	58_37c	-1	reviewed	missense	c.209	p.S70Y	1.000	NULL	HMMPfam_Ca_channel_B,HMMPfam_SH3_1,superfamily_SH3-domain,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CHST9	83539	genome.wustl.edu	37	18	24497058	24497058	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	18	24497058	24497058	T	G	SNP	CHST9	NM_031422.4	human	genbank	58_37c	-1	validated	missense	c.497	p.N166T	0.030	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
CTNNA2	1496	genome.wustl.edu	37	2	80136851	80136851	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	80136851	80136851	C	T	SNP	CTNNA2	NM_004389.3	human	genbank	58_37c	+1	validated	silent	c.984	p.R328	0.309	HMMPfam_Vinculin	PatternScan_VINCULIN_1,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
FARP2	9855	genome.wustl.edu	37	2	242312707	242312707	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	242312707	242312707	T	A	SNP	FARP2	NM_014808.2	human	genbank	58_37c	+1	validated	splice_site	c.183+2	e1+2	1.000	-	-	-	no_errors
HIST1H3B	8358	genome.wustl.edu	37	6	26031937	26031937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	6	26031937	26031937	C	T	SNP	HIST1H3B	NM_003537.3	human	genbank	58_37c	-1	reviewed	missense	c.352	p.V118M	1.000	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
KCNJ6	3763	genome.wustl.edu	37	21	39087178	39087178	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	21	39087178	39087178	C	A	SNP	KCNJ6	NM_002240.2	human	genbank	58_37c	-1	reviewed	missense	c.282	p.L94F	0.977	HMMPfam_IRK,superfamily_SSF81324	HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
KIAA2026	158358	genome.wustl.edu	37	9	5921255	5921255	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	9	5921255	5921255	G	T	SNP	KIAA2026	NM_001017969.2	human	genbank	58_37c	-1	validated	missense	c.4741	p.Q1581K	1.000	NULL	superfamily_Bromodomain	-	no_errors
KIR2DL1	3802	genome.wustl.edu	37	19	55284926	55284926	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	19	55284926	55284926	G	A	SNP	KIR2DL1	NM_014218.2	human	genbank	58_37c	+1	reviewed	missense	c.212	p.R71H	0.000	HMMPfam_ig,superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LGR4	55366	genome.wustl.edu	37	11	27393924	27393924	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	11	27393924	27393924	A	C	SNP	LGR4	NM_018490.2	human	genbank	58_37c	-1	validated	silent	c.1401	p.A467	1.000	superfamily_SSF52047	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058,superfamily_SSF81321	-	no_errors
LOC100129053	0	genome.wustl.edu	37	11	94783146	94783146	+	Silent	SNP	T	T	C	rs2848446	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	11	94783146	94783146	T	C	SNP	LOC100129053	XM_001717996.1	human	genbank	58_37c	+1	model	silent	c.561	p.A187	0.856	HMMSmart_SM00558,HMMPfam_JmjC	HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_JmjC	-	pseudogene
MTR	4548	genome.wustl.edu	37	1	237015858	237015858	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	237015858	237015858	C	T	SNP	MTR	NM_000254.2	human	genbank	58_37c	+1	reviewed	missense	c.1733	p.S578F	1.000	HMMPfam_Pterin_bind,superfamily_Dihydropteroate synthetase-like	HMMPfam_Pterin_bind,HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase,HMMPfam_B12-binding_2,superfamily_Methionine synthase domain,HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like,HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain,superfamily_Dihydropteroate synthetase-like	-	no_errors
MTR	4548	genome.wustl.edu	37	1	237023136	237023136	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	237023136	237023136	C	A	SNP	MTR	NM_000254.2	human	genbank	58_37c	+1	reviewed	missense	c.1957	p.Q653K	0.644	NULL	HMMPfam_Pterin_bind,HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase,HMMPfam_B12-binding_2,superfamily_Methionine synthase domain,HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like,HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain,superfamily_Dihydropteroate synthetase-like	-	no_errors
MYH13	8735	genome.wustl.edu	37	17	10248682	10248682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	10248682	10248682	C	T	SNP	MYH13	NM_003802.2	human	genbank	58_37c	-1	validated	missense	c.1421	p.S474N	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NOTCH3	4854	genome.wustl.edu	37	19	15281551	15281551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	19	15281551	15281551	C	T	SNP	NOTCH3	NM_000435.2	human	genbank	58_37c	-1	reviewed	missense	c.4822	p.A1608T	0.999	HMMPfam_NODP	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,HMMSmart_SM00179,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
PPEF1	5475	genome.wustl.edu	37	X	18800500	18800500	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	18800500	18800500	G	T	SNP	PPEF1	NM_006240.2	human	genbank	58_37c	+1	reviewed	nonsense	c.742	p.E248*	1.000	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases	HMMPfam_IQ,HMMSmart_SM00015,HMMSmart_SM00054,HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,HMMPfam_PPP5,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Metallo-dependent phosphatases	-	no_errors
RHOQ	23433	genome.wustl.edu	37	2	46803351	46803351	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	46803351	46803351	A	G	SNP	RHOQ	NM_012249.3	human	genbank	58_37c	+1	validated	silent	c.327	p.E109	1.000	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RNASEN	29102	genome.wustl.edu	37	5	31526807	31526807	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	5	31526807	31526807	A	C	SNP	RNASEN	NM_013235.4	human	genbank	58_37c	-1	validated	missense	c.233	p.F78C	1.000	NULL	HMMPfam_Ribonuclease_3,HMMSmart_SM00535,PatternScan_RNASE_3_1,superfamily_RNase III catalytic domain-like (Pfam 00636),HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	-	no_errors
SMYD2	56950	genome.wustl.edu	37	1	214491454	214491454	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	214491454	214491454	A	G	SNP	SMYD2	NM_020197.2	human	genbank	58_37c	+1	validated	silent	c.381	p.K127	0.043	HMMSmart_SET,superfamily_SSF82199	HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_SSF82199	-	no_errors
SOS1	6654	genome.wustl.edu	37	2	39281877	39281877	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	39281877	39281877	T	C	SNP	SOS1	NM_005633.3	human	genbank	58_37c	-1	reviewed	missense	c.598	p.T200A	1.000	superfamily_DBL homology domain (DH-domain)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,HMMPfam_Histone,superfamily_Ras GEF,superfamily_Histone-fold,PatternScan_RASGEF,superfamily_PH domain-like	-	no_errors
STAG2	10735	genome.wustl.edu	37	X	123195704	123195704	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	123195704	123195704	G	T	SNP	STAG2	NM_001042749.1	human	genbank	58_37c	+1	validated	nonsense	c.1618	p.G540*	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
SYCE1	93426	genome.wustl.edu	37	10	135370263	135370263	+	Silent	SNP	G	G	A	rs150064711	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	10	135370263	135370263	G	A	SNP	SYCE1	NM_001143764.1	human	genbank	58_37c	-1	validated	silent	c.528	p.H176	0.103	NULL	NULL	-	no_errors
TCOF1	6949	genome.wustl.edu	37	5	149776147	149776149	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	5	149776147	149776149	AAG	-	DEL	TCOF1	NM_001135243.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.4084_4086	p.K1365in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Treacle,HMMSmart_SM00667	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578253	7578253	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	7578253	7578253	C	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.596	p.G199V	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
