Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
TP73	7161	genome.wustl.edu	37	1	3644716	3644716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_005427.2	+1	reviewed	p.V337I	0.006	9	0.000	10	0.400	-	-	benign(0)	tolerated(1)	-	NULL
MYSM1	114803	genome.wustl.edu	37	1	59154778	59154778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001085487.1	-1	provisional	p.P111S	1.000	75	0%	41	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCAN	63827	genome.wustl.edu	37	1	156622708	156622708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_198427.1	+1	validated	p.A656S	0.000	211	0%	163	25.8%	-	-	benign(0)	tolerated(0.96)	-	NULL
SPTA1	6708	genome.wustl.edu	37	1	158592966	158592966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_003126.2	-1	reviewed	p.S1976I	1.000	334	0%	280	34.3%	-	-	benign(0.245)	deleterious(0.01)	neutral(0.431)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MNDA	4332	genome.wustl.edu	37	1	158815489	158815489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_002432.1	+1	reviewed	p.P228Q	0.001	119	0%	106	28.3%	-	-	possibly_damaging(0.923)	tolerated(0.24)	neutral(0.410)	HMMPfam_HIN
PRRC2C	23215	genome.wustl.edu	37	1	171535758	171535759	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_015172.3	+1	validated	p.K2110fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
WDR43	23160	genome.wustl.edu	37	2	29129328	29129328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_015131.1	+1	validated	p.S122R	1.000	20	0%	19	21.1%	-	-	benign(0.045)	tolerated(0.2)	neutral(0.052)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
VIT	5212	genome.wustl.edu	37	2	36982179	36982179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_053276.3	+1	validated	p.E131K	1.000	179	0%	167	32.3%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_LCCL,superfamily_LCCL
SNRNP27	11017	genome.wustl.edu	37	2	70131394	70131394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_006857.1	+1	provisional	p.M141R	1.000	238	0%	191	59.7%	-	-	possibly_damaging(0.727)	deleterious(0)	deleterious(0.709)	HMMPfam_DUF1777
CNTNAP5	129684	genome.wustl.edu	37	2	125281937	125281937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_130773.2	+1	reviewed	p.R461H	1.000	109	0%	87	57.5%	-	-	benign(0.064)	tolerated(1)	neutral(0.004)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
GPR155	151556	genome.wustl.edu	37	2	175301028	175301028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001033045.2	-1	validated	p.V810G	1.000	211	1.9%	180	68.9%	-	-	possibly_damaging(0.861)	deleterious(0.01)	deleterious(0.739)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
TTN	7273	genome.wustl.edu	37	2	179446423	179446423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000356127	-1	known	p.Y19621C	1.000	36	0%	23	73.9%	-	-	probably_damaging(0.964)	-	-	HMMPfam_fn3,HMMSmart_SM00060
MYO1B	4430	genome.wustl.edu	37	2	192234281	192234281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001130158.1	+1	validated	p.R349P	1.000	91	0%	104	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TYW5	129450	genome.wustl.edu	37	2	200800663	200800663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001039693.2	-1	validated	p.F228L	1.000	243	0%	185	67%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
SPEG	10290	genome.wustl.edu	37	2	220326653	220326653	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_005876.4	+1	validated	p.Y830*	0.998	76	0%	59	27.1%	-	-	-	-	-	NULL
DIS3L2	129563	genome.wustl.edu	37	2	233001224	233001224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_152383.4	+1	validated	p.G249S	1.000	649	0%	660	64.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001098209.1	+1	reviewed	p.D32N	1.000	46	0%	59	54.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ECT2	1894	genome.wustl.edu	37	3	172523535	172523535	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000437296	+1	known	p.A47T	0.957	110	0%	79	36.7%	-	-	-	-	-	superfamily_PH domain-like
PKD2	5311	genome.wustl.edu	37	4	88940681	88940681	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_000297.2	+1	reviewed	p.E223*	1.000	208	0%	104	40.4%	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591095	67591115	+	In_Frame_Del	DEL	TGAACAGCATTAAACCAGACC	TGAACAGCATTAAACCAGACC	-	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	TGAACAGCATTAAACCAGACC	TGAACAGCATTAAACCAGACC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_181523.1	+1	reviewed	p.MNSIKPDL563in_frame_delI	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.993:1.000:1.000:0.892:1.000:1.000:0.152:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PCDHA9	9752	genome.wustl.edu	37	5	140230065	140230065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_031857.1	+1	reviewed	p.T662M	1.000	25	0%	30	40%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CTGF	1490	genome.wustl.edu	37	6	132271194	132271194	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001901.2	-1	reviewed	p.G216	1.000	81	0%	39	46.2%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SGK1	6446	genome.wustl.edu	37	6	134493908	134493910	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001143676.1	-1	reviewed	p.L279in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MIR548A2	693126	genome.wustl.edu	37	6	135560373	135560373	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000384956	+1	known	NULL	0.032	55	0%	10	50%	-	-	-	-	-	-
GRM1	2911	genome.wustl.edu	37	6	146350715	146350715	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_000838.3	+1	reviewed	p.R21T	0.355	182	0%	151	49.7%	-	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
TMED4	222068	genome.wustl.edu	37	7	44620698	44620698	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_182547.2	-1	provisional	p.Y176	1.000	42	0%	65	35.4%	-	-	-	-	-	HMMPfam_EMP24_GP25L
ADRA1A	148	genome.wustl.edu	37	8	26721685	26721685	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_033303.3	-1	reviewed	p.K268*	1.000	39	0%	13	53.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SECISBP2	79048	genome.wustl.edu	37	9	91940437	91940437	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_024077.3	+1	reviewed	p.S93C	0.155	376	0.3%	280	47.1%	-	-	possibly_damaging(0.66)	tolerated(0.06)	deleterious(0.555)	NULL
NUP188	23511	genome.wustl.edu	37	9	131745645	131745645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_015354.1	+1	validated	p.R624G	1.000	185	0%	126	42.1%	-	-	probably_damaging(0.98)	tolerated(0.34)	neutral(0.447)	HMMPfam_Nup188
HK1	3098	genome.wustl.edu	37	10	71144659	71144659	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_033497.2	+1	reviewed	p.T613	0.624	213	0%	149	16.1%	-	-	-	-	-	HMMPfam_Hexokinase_1,PatternScan_HEXOKINASES,superfamily_SSF53067
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000371953	+1	known	p.R130G	1.000	310	0.3%	292	30.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720862	89720879	+	Frame_Shift_Del	DEL	CTCCAAATTTTAAGGTCA	CTCCAAATTTTAAGGTCA	-	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	CTCCAAATTTTAAGGTCA	CTCCAAATTTTAAGGTCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000371953	+1	known	p.S338fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
HNRNPUL2	221092	genome.wustl.edu	37	11	62484515	62484515	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001079559.1	-1	provisional	p.R643G	0.986	61	0%	40	35%	-	-	possibly_damaging(0.951)	tolerated(0.31)	neutral(0.421)	NULL
CDC42BPG	55561	genome.wustl.edu	37	11	64606564	64606564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_017525.2	-1	validated	p.E273K	1.000	31	0.000	5	1.000	-	-	benign(0.054)	deleterious(0.01)	neutral(0.409)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CACNA1C	775	genome.wustl.edu	37	12	2690805	2690805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_199460.2	+1	reviewed	p.R649C	1.000	20	0%	10	60%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ENSG00000248116	0	genome.wustl.edu	37	12	19460458	19460458	+	RNA	SNP	A	A	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000510738	+1	novel	NULL	0.996	97	0%	49	53.1%	-	-	-	-	-	-
PDZRN4	29951	genome.wustl.edu	37	12	41900376	41900376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_013377.3	+1	validated	p.Y63C	0.187	148	0%	79	39.2%	-	-	possibly_damaging(0.502)	tolerated(0.18)	neutral(0.224)	superfamily_PDZ
KL	9365	genome.wustl.edu	37	13	33627997	33627997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_004795.3	+1	reviewed	p.P305S	1.000	278	0%	164	53.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
RNF31	55072	genome.wustl.edu	37	14	24617281	24617281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_017999.4	+1	validated	p.G97S	0.393	78	0%	26	50%	-	-	benign(0)	tolerated(1)	-	HMMPfam_PUB
MDGA2	161357	genome.wustl.edu	37	14	47389346	47389346	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001113498.1	-1	validated	p.E634*	1.000	130	0%	81	46.9%	-	-	-	-	-	NULL
C14orf101	54916	genome.wustl.edu	37	14	57114171	57114171	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_017799.3	+1	validated	p.L694	1.000	183	0%	112	46.4%	-	-	-	-	-	NULL
MAN2C1	4123	genome.wustl.edu	37	15	75648270	75648270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_006715.2	-1	validated	p.V1034M	0.069	23	0%	19	63.2%	-	-	unknown(0)	tolerated(0.16)	-	NULL
ACSM1	116285	genome.wustl.edu	37	16	20648124	20648124	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_052956.2	-1	validated	p.T412	0.037	163	0%	95	42.1%	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ZFHX3	463	genome.wustl.edu	37	16	72827610	72827611	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_006885.3	-1	reviewed	p.Q2990fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PRPF8	10594	genome.wustl.edu	37	17	1561558	1561558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_006445.3	-1	reviewed	p.R1832C	1.000	124	0%	111	45.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C17orf108	201229	genome.wustl.edu	37	17	26207381	26207381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000379103	-1	known	p.F99S	1.000	36	0%	13	76.9%	-	-	unknown(0)	-	-	NULL
ABCA9	10350	genome.wustl.edu	37	17	67045552	67045552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_080283.3	-1	reviewed	p.Q59P	0.013	177	0%	93	48.4%	-	-	benign(0.045)	tolerated(0.13)	neutral(0.255)	NULL
MUC16	94025	genome.wustl.edu	37	19	8966791	8966791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_024690.2	-1	validated	p.G14388R	0.004	30	0%	16	43.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
ATP1A3	478	genome.wustl.edu	37	19	42482315	42482315	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_152296.3	-1	reviewed	p.S598	0.536	132	0%	63	49.2%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81665
TSKS	60385	genome.wustl.edu	37	19	50249933	50249950	+	In_Frame_Del	DEL	CTGCTTCTCCTCCGGCTC	CTGCTTCTCCTCCGGCTC	-	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	CTGCTTCTCCTCCGGCTC	CTGCTTCTCCTCCGGCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_021733.1	-1	reviewed	p.EPEEKQ257in_frame_del	0.770:0.699:0.675:0.634:0.568:0.473:0.430:0.417:0.419:0.415:0.402:0.382:0.379:0.392:0.396:0.394:0.384:0.208	-	-	-	-	-	-	-	-	-	NULL
CACNG6	59285	genome.wustl.edu	37	19	54515252	54515252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_145814.1	+1	reviewed	p.A198T	0.352	18	0%	37	37.8%	-	-	benign(0.06)	tolerated(0.37)	neutral(0.023)	NULL
ENSG00000226812	0	genome.wustl.edu	37	20	42979259	42979259	+	Splice_Site	SNP	C	C	G	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000438702	-1	known	NULL	0.000	57	0%	43	51.2%	-	-	-	-	-	-
RUNX1	861	genome.wustl.edu	37	21	36421376	36421376	+	Splice_Site	SNP	A	A	C	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000431176	-1	known	e0+2	0.993	80	1.3%	35	20%	-	-	-	-	-	-
ENSG00000209082	0	genome.wustl.edu	37	MT	3247	3247	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	ENST00000386347	+1	novel	NULL	NULL	65	0%	136	96.3%	-	-	-	-	-	-
PRPS2	5634	genome.wustl.edu	37	X	12837722	12837722	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_001039091.2	+1	reviewed	p.G212	0.003	290	0%	156	38.5%	-	-	-	-	-	HMMPfam_Pribosyltran,superfamily_SSF53271
ZNF449	203523	genome.wustl.edu	37	X	134481132	134481132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_152695.5	+1	reviewed	p.R30H	0.964	163	0%	117	47.9%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_SCAN,HMMSmart_SM00431
L1CAM	3897	genome.wustl.edu	37	X	153131222	153131222	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GV-01A-31W-A062-09	TCGA-A5-A0GV-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3d1d3497-f9f5-4922-bed9-684d90c3b571	83b4dd11-c28c-429a-97e4-6add256dd278	NM_000425.3	-1	reviewed	p.A828	0.000	68	0%	36	22.2%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
