Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BAIAP2L1	55971	genome.wustl.edu	37	7	97933530	97933530	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	7	97933530	97933530	G	A	SNP	BAIAP2L1	NM_018842.4	human	genbank	58_37c	-1	reviewed	missense	c.1400	p.S467F	0.971	NULL	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2,HMMPfam_IMD	-	no_errors
BARD1	580	genome.wustl.edu	37	2	215657118	215657118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	2	215657118	215657118	C	T	SNP	BARD1	NM_000465.2	human	genbank	58_37c	-1	reviewed	silent	c.267	p.P89	1.000	superfamily_SSF57850	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMSmart_RING,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
BRIP1	83990	genome.wustl.edu	37	17	59821953	59821953	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	17	59821953	59821953	C	G	SNP	BRIP1	NM_032043.1	human	genbank	58_37c	-1	reviewed	splice_site	c.2098-1	e14-1	1.000	-	-	-	no_errors
C1orf125	126859	genome.wustl.edu	37	1	179452320	179452320	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	1	179452320	179452320	T	G	SNP	C1orf125	NM_144696.4	human	genbank	58_37c	+1	validated	missense	c.2055	p.N685K	0.972	NULL	HMMPfam_Ax_dynein_light	-	no_errors
CACNA2D4	93589	genome.wustl.edu	37	12	1949960	1949960	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	1949960	1949960	C	T	SNP	CACNA2D4	NM_172364.4	human	genbank	58_37c	-1	reviewed	silent	c.2496	p.V832	0.763	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,superfamily_vWA-like	-	no_errors
CRIPAK	285464	genome.wustl.edu	37	4	1388379	1388379	+	Missense_Mutation	SNP	G	G	A	rs56109734	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	4	1388379	1388379	G	A	SNP	CRIPAK	NM_175918.3	human	genbank	58_37c	+1	validated	missense	c.80	p.C27Y	0.833	NULL	HMMSmart_PostSET	-	no_errors
CUL4B	8450	genome.wustl.edu	37	X	119694135	119694135	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	X	119694135	119694135	G	C	SNP	CUL4B	NM_003588.3	human	genbank	58_37c	-1	reviewed	missense	c.413	p.S138C	0.998	NULL	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DHTKD1	55526	genome.wustl.edu	37	10	12136161	12136161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	12136161	12136161	C	T	SNP	DHTKD1	NM_018706.5	human	genbank	58_37c	+1	validated	missense	c.1249	p.R417C	1.000	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	HMMPfam_E1_dh,HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	-	no_errors
DIS3L	115752	genome.wustl.edu	37	15	66618592	66618592	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	15	66618592	66618592	G	A	SNP	DIS3L	NM_133375.3	human	genbank	58_37c	+1	validated	nonsense	c.1842	p.W614*	0.999	HMMPfam_RNB	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	no_errors
DNA2	1763	genome.wustl.edu	37	10	70218891	70218891	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	70218891	70218891	G	A	SNP	DNA2	NM_001080449.1	human	genbank	58_37c	-1	provisional	missense	c.947	p.S316L	0.385	HMMPfam_Dna2	HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117342753	117342753	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	11	117342753	117342753	T	C	SNP	DSCAML1	NM_020693.2	human	genbank	58_37c	-1	provisional	splice_site	c.2966-2	e15-2	1.000	-	-	-	no_errors
DSG4	147409	genome.wustl.edu	37	18	28972180	28972182	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	18	28972180	28972182	TCT	-	DEL	DSG4	NM_001134453.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.882_884	p.L295in_frame_del	1.000:0.999:0.987	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
DYNC1H1	1778	genome.wustl.edu	37	14	102452147	102452147	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	102452147	102452147	A	G	SNP	DYNC1H1	NM_001376.4	human	genbank	58_37c	+1	reviewed	missense	c.1585	p.N529D	1.000	HMMPfam_DHC_N1	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16947092	16947092	+	RNA	SNP	G	G	A	rs384073	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	1	16947092	16947092	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.669	-	-	-	no_errors
ERP29	10961	genome.wustl.edu	37	12	112460034	112460034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	112460034	112460034	C	T	SNP	ERP29	NM_006817.3	human	genbank	58_37c	+1	reviewed	missense	c.364	p.R122W	0.997	superfamily_Thiordxn-like_fd,HMMPfam_ERp29_N	PatternScan_ER_TARGET,HMMPfam_ERp29,superfamily_ERP29_C,superfamily_Thiordxn-like_fd,HMMPfam_ERp29_N	-	no_errors
FAM71B	153745	genome.wustl.edu	37	5	156589516	156589516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	156589516	156589516	C	T	SNP	FAM71B	NM_130899.2	human	genbank	58_37c	-1	validated	missense	c.1760	p.S587N	0.000	NULL	NULL	-	no_errors
FFAR1	2864	genome.wustl.edu	37	19	35843060	35843060	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	19	35843060	35843060	C	T	SNP	FFAR1	NM_005303.2	human	genbank	58_37c	+1	reviewed	silent	c.606	p.Y202	0.967	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GPR52	9293	genome.wustl.edu	37	1	174417939	174417939	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	1	174417939	174417939	C	A	SNP	GPR52	NM_005684.4	human	genbank	58_37c	+1	validated	nonsense	c.690	p.C230*	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GRIN3A	116443	genome.wustl.edu	37	9	104499857	104499857	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	9	104499857	104499857	C	T	SNP	GRIN3A	NM_133445.2	human	genbank	58_37c	-1	reviewed	silent	c.405	p.L135	1.000	superfamily_SSF53822	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HLA-C	3107	genome.wustl.edu	37	6	31238880	31238880	+	Missense_Mutation	SNP	C	C	T	rs145793920	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	31238880	31238880	C	T	SNP	HLA-C	NM_002117.4	human	genbank	58_37c	-1	reviewed	missense	c.589	p.E197K	0.999	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
HPS4	89781	genome.wustl.edu	37	22	26860227	26860227	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	22	26860227	26860227	T	G	SNP	HPS4	NM_022081.4	human	genbank	58_37c	-1	reviewed	silent	c.1369	p.R457	0.001	NULL	NULL	-	no_errors
HSD17B6	8630	genome.wustl.edu	37	12	57181033	57181033	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	57181033	57181033	T	A	SNP	HSD17B6	NM_003725.2	human	genbank	58_37c	+1	reviewed	silent	c.861	p.A287	0.022	superfamily_NAD(P)-bd	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd	-	no_errors
KIAA1274	27143	genome.wustl.edu	37	10	72285804	72285804	+	Missense_Mutation	SNP	G	G	A	rs143037794	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	72285804	72285804	G	A	SNP	KIAA1274	NM_014431.2	human	genbank	58_37c	+1	validated	missense	c.97	p.V33I	0.103	NULL	superfamily_SSF52799	-	no_errors
KLHL7	55975	genome.wustl.edu	37	7	23163424	23163424	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	7	23163424	23163424	T	G	SNP	KLHL7	NM_001031710.2	human	genbank	58_37c	+1	reviewed	missense	c.149	p.V50G	1.000	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LOC728211	728211	genome.wustl.edu	37	18	12076504	12076504	+	RNA	SNP	A	A	C	rs12966109	byCluster;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	18	12076504	12076504	A	C	SNP	LOC728211	XR_015403.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.953	-	-	-	pseudogene
LRRC16B	90668	genome.wustl.edu	37	14	24528876	24528876	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	24528876	24528876	T	G	SNP	LRRC16B	NM_138360.3	human	genbank	58_37c	+1	validated	silent	c.1803	p.T601	0.997	superfamily_RNI-like	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
LRRN1	57633	genome.wustl.edu	37	3	3888104	3888104	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	3	3888104	3888104	A	C	SNP	LRRN1	NM_020873.5	human	genbank	58_37c	+1	validated	missense	c.1779	p.E593D	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
LRTM2	654429	genome.wustl.edu	37	12	1943503	1943503	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	1943503	1943503	C	A	SNP	LRTM2	NM_001039029.2	human	genbank	58_37c	+1	validated	silent	c.729	p.P243	1.000	HMMSmart_SM00082,superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
LRTM2	654429	genome.wustl.edu	37	12	1943594	1943594	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	1943594	1943594	C	T	SNP	LRTM2	NM_001039029.2	human	genbank	58_37c	+1	validated	missense	c.820	p.P274S	0.994	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
MAML1	9794	genome.wustl.edu	37	5	179195873	179195873	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	179195873	179195873	C	T	SNP	MAML1	NM_014757.4	human	genbank	58_37c	+1	reviewed	missense	c.1754	p.P585L	0.948	NULL	HMMPfam_MamL-1	-	no_errors
MAP2K2	5605	genome.wustl.edu	37	19	4101062	4101062	+	Silent	SNP	G	G	T	rs11539507	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	19	4101062	4101062	G	T	SNP	MAP2K2	NM_030662.3	human	genbank	58_37c	-1	reviewed	silent	c.660	p.I220	0.997	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MBD6	114785	genome.wustl.edu	37	12	57918847	57918847	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	57918847	57918847	A	G	SNP	MBD6	NM_052897.3	human	genbank	58_37c	+1	validated	missense	c.328	p.M110V	0.996	NULL	HMMPfam_MBD	-	no_errors
MDN1	23195	genome.wustl.edu	37	6	90426511	90426511	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	90426511	90426511	C	G	SNP	MDN1	NM_014611.1	human	genbank	58_37c	-1	provisional	missense	c.6601	p.E2201Q	1.000	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9048936	9048937	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	19	9048936	9048937	AA	-	DEL	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.32695_32694	p.P10900fs	0.000:0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYBL1	4603	genome.wustl.edu	37	8	67485600	67485600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	8	67485600	67485600	C	T	SNP	MYBL1	NM_001080416.2	human	genbank	58_37c	-1	validated	missense	c.1612	p.G538R	1.000	HMMPfam_Cmyb_C	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors
NEB	4703	genome.wustl.edu	37	2	152375530	152375532	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	2	152375530	152375532	CTT	-	DEL	NEB	NM_004543.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.17541_17539	p.K5847in_frame_del	0.987:1.000:1.000	HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
NR4A3	8013	genome.wustl.edu	37	9	102609749	102609749	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	9	102609749	102609749	C	T	SNP	NR4A3	NM_173200.1	human	genbank	58_37c	+1	reviewed	silent	c.1518	p.F506	1.000	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
NRXN1	9378	genome.wustl.edu	37	2	50850528	50850528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	2	50850528	50850528	G	A	SNP	NRXN1	NM_001135659.1	human	genbank	58_37c	-1	reviewed	missense	c.1157	p.A386V	1.000	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	PatternScan_ASX_HYDROXYL,HMMSmart_LamG,HMMSmart_4.1m,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	-	no_errors
NSUN6	221078	genome.wustl.edu	37	10	18931451	18931451	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	18931451	18931451	G	A	SNP	NSUN6	NM_182543.2	human	genbank	58_37c	-1	validated	missense	c.265	p.H89Y	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Nol1_Nop2_Fmu,HMMPfam_PUA,superfamily_PUA domain-like,PatternScan_NOL1_NOP2_SUN,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
NUP160	23279	genome.wustl.edu	37	11	47859145	47859146	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	11	47859145	47859146	CT	-	DEL	NUP160	NM_015231.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.779_778	p.S260fs	1.000:1.000	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
PDS5B	23047	genome.wustl.edu	37	13	33275522	33275522	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	13	33275522	33275522	C	T	SNP	PDS5B	NM_015032.3	human	genbank	58_37c	+1	reviewed	silent	c.1803	p.I601	0.994	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat,HMMPfam_AT_hook	-	no_errors
PEX6	5190	genome.wustl.edu	37	6	42932852	42932852	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	42932852	42932852	C	T	SNP	PEX6	NM_000287.3	human	genbank	58_37c	-1	reviewed	missense	c.2627	p.R876Q	1.000	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PNLIP	5406	genome.wustl.edu	37	10	118315541	118315541	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	118315541	118315541	T	G	SNP	PNLIP	NM_000936.2	human	genbank	58_37c	+1	reviewed	missense	c.841	p.L281V	0.254	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_PLAT,HMMSmart_SM00308,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	-	no_errors
PRDM1	639	genome.wustl.edu	37	6	106553776	106553776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	6	106553776	106553776	G	A	SNP	PRDM1	NM_001198.3	human	genbank	58_37c	+1	reviewed	missense	c.1741	p.A581T	0.998	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_SET,HMMSmart_SET,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
PRLR	5618	genome.wustl.edu	37	5	35086314	35086314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	35086314	35086314	C	T	SNP	PRLR	NM_000949.4	human	genbank	58_37c	-1	validated	missense	c.199	p.E67K	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_HEMATOPO_REC_L_F1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	10	89720799	89720802	TACT	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_del	c.950_953	p.T319fs	1.000:1.000:1.000:1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RBM27	54439	genome.wustl.edu	37	5	145641353	145641353	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	145641353	145641353	A	G	SNP	RBM27	NM_018989.1	human	genbank	58_37c	+1	validated	missense	c.2174	p.H725R	0.944	NULL	HMMSmart_RRM,HMMPfam_zf-CCCH,superfamily_SSF101233,superfamily_SSF54928	-	no_errors
RBM5	10181	genome.wustl.edu	37	3	50154522	50154522	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	3	50154522	50154522	C	T	SNP	RBM5	NM_005778.1	human	genbank	58_37c	+1	provisional	nonsense	c.2110	p.R704*	0.996	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_RNA-binding domain RBD	-	no_errors
SALL2	6297	genome.wustl.edu	37	14	21991858	21991858	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	21991858	21991858	G	A	SNP	SALL2	NM_005407.1	human	genbank	58_37c	-1	validated	silent	c.2004	p.F668	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SLC24A3	57419	genome.wustl.edu	37	20	19560658	19560658	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	20	19560658	19560658	C	G	SNP	SLC24A3	NM_020689.3	human	genbank	58_37c	+1	validated	missense	c.363	p.F121L	1.000	NULL	HMMPfam_Na_Ca_ex	-	no_errors
SNCAIP	9627	genome.wustl.edu	37	5	121758575	121758575	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	5	121758575	121758575	G	C	SNP	SNCAIP	NM_005460.2	human	genbank	58_37c	+1	reviewed	missense	c.143	p.S48T	0.984	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
SNW1	22938	genome.wustl.edu	37	14	78205185	78205185	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	14	78205185	78205185	G	A	SNP	SNW1	NM_012245.2	human	genbank	58_37c	-1	reviewed	nonsense	c.469	p.Q157*	1.000	NULL	HMMPfam_SKIP_SNW	-	no_errors
SSPN	8082	genome.wustl.edu	37	12	26383694	26383694	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	26383694	26383694	C	T	SNP	SSPN	NM_005086.4	human	genbank	58_37c	+1	reviewed	silent	c.417	p.A139	0.277	NULL	NULL	-	no_errors
STAG3L1	54441	genome.wustl.edu	37	7	74991317	74991317	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	7	74991317	74991317	G	-	DEL	STAG3L1	NM_018991.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.3	p.M1fs	0.943	NULL	superfamily_ARM repeat	-	no_errors
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48809392	48809392	+	Silent	SNP	C	C	T	rs144521313	byFrequency	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	2	48809392	48809392	C	T	SNP	STON1-GTF2A1L	NM_172311.1	human	genbank	58_37c	+1	reviewed	silent	c.1620	p.Y540	0.988	HMMPfam_Adap_comp_sub,superfamily_AP50	HMMPfam_TFIIA,HMMPfam_Adap_comp_sub,superfamily_AP50,superfamily_TFIIA_helical,superfamily_TFIIA_betabarrel	-	no_errors
TMEM125	128218	genome.wustl.edu	37	1	43738829	43738829	+	Missense_Mutation	SNP	G	A	A	rs142942435	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	1	43738829	43738829	G	A	SNP	TMEM125	NM_144626.2	human	genbank	58_37c	+1	validated	missense	c.436	p.A146T	0.080	NULL	NULL	-	no_errors
TPR	7175	genome.wustl.edu	37	1	186287865	186287865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	1	186287865	186287865	C	T	SNP	TPR	NM_003292.2	human	genbank	58_37c	-1	reviewed	missense	c.6664	p.V2222M	0.995	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors
TPSAB1	7177	genome.wustl.edu	37	16	1291188	1291188	+	Silent	SNP	C	C	T	rs62012906	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	16	1291188	1291188	C	T	SNP	TPSAB1	NM_003294.3	human	genbank	58_37c	+1	reviewed	silent	c.96	p.V32	0.552	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TSG101	7251	genome.wustl.edu	37	11	18531179	18531179	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	11	18531179	18531179	T	C	SNP	TSG101	NM_006292.2	human	genbank	58_37c	-1	reviewed	missense	c.391	p.M131V	1.000	HMMSmart_SM00212,HMMPfam_UEV,superfamily_UBC-like	HMMSmart_SM00212,HMMPfam_UEV,superfamily_UBC-like,HMMPfam_Vps23_core	-	no_errors
TTYH2	94015	genome.wustl.edu	37	17	72248454	72248454	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	17	72248454	72248454	G	T	SNP	TTYH2	NM_032646.5	human	genbank	58_37c	+1	reviewed	missense	c.1198	p.A400S	0.992	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors
UCHL3	7347	genome.wustl.edu	37	13	76141383	76141383	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	13	76141383	76141383	A	G	SNP	UCHL3	NM_006002.3	human	genbank	58_37c	+1	provisional	missense	c.361	p.K121E	1.000	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C12,PatternScan_UCH_1,superfamily_Cysteine proteinases	-	no_errors
USP44	84101	genome.wustl.edu	37	12	95926958	95926958	+	Missense_Mutation	SNP	C	C	T	rs148476030	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	12	95926958	95926958	C	T	SNP	USP44	NM_001042403.1	human	genbank	58_37c	-1	validated	missense	c.1075	p.G359R	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,HMMPfam_zf-UBP,HMMSmart_SM00290,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
USP51	158880	genome.wustl.edu	37	X	55513981	55513981	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	X	55513981	55513981	G	C	SNP	USP51	NM_201286.3	human	genbank	58_37c	-1	validated	missense	c.1392	p.H464Q	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMPfam_zf-UBP,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
WHSC1	7468	genome.wustl.edu	37	4	1920229	1920229	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	4	1920229	1920229	A	G	SNP	WHSC1	NM_001042424.2	human	genbank	58_37c	+1	reviewed	missense	c.1289	p.D430G	0.278	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT,superfamily_SET domain	-	no_errors
ZFHX4	79776	genome.wustl.edu	37	8	77620135	77620135	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c6b00eff-6c4e-4d79-a9b1-8fb1f3090816	bf64ab88-5956-4a6a-a303-6a2cbb82f649	8	77620135	77620135	A	G	SNP	ZFHX4	NM_024721.4	human	genbank	58_37c	+1	validated	missense	c.2867	p.K956R	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
