Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACAN	176	genome.wustl.edu	37	15	89417113	89417113	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	15	89417113	89417113	C	T	SNP	ACAN	NM_013227.3	human	genbank	58_37c	+1	reviewed	silent	c.7029	p.T2343	0.997	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
ACER2	340485	genome.wustl.edu	37	9	19423945	19423945	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	19423945	19423945	A	G	SNP	ACER2	NM_001010887.2	human	genbank	58_37c	+1	validated	missense	c.194	p.Y65C	1.000	HMMPfam_aPHC	HMMPfam_aPHC	-	no_errors
ARHGEF11	9826	genome.wustl.edu	37	1	156910022	156910022	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	156910022	156910022	A	T	SNP	ARHGEF11	NM_198236.1	human	genbank	58_37c	-1	reviewed	missense	c.3710	p.L1237H	0.841	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729	-	no_errors
ARID5A	10865	genome.wustl.edu	37	2	97217854	97217854	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	97217854	97217854	T	A	SNP	ARID5A	NM_212481.1	human	genbank	58_37c	+1	validated	missense	c.1589	p.V530D	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
ATG4B	23192	genome.wustl.edu	37	2	242610773	242610773	+	Missense_Mutation	SNP	T	T	A	rs7601000	byCluster;byFrequency;by1000genomes	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	242610773	242610773	T	A	SNP	ATG4B	NM_013325.4	human	genbank	58_37c	+1	reviewed	missense	c.1061	p.L354Q	0.976	NULL	HMMPfam_Peptidase_C54	-	no_errors
BCORL1	63035	genome.wustl.edu	37	X	129148840	129148840	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	X	129148840	129148840	G	T	SNP	BCORL1	NM_021946.3	human	genbank	58_37c	+1	reviewed	missense	c.2092	p.D698Y	1.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
BPI	671	genome.wustl.edu	37	20	36939032	36939036	+	Frame_Shift_Del	DEL	CACAT	CACAT	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	CACAT	CACAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	20	36939032	36939036	CACAT	-	DEL	BPI	NM_001725.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.526_530	p.H176fs	0.000:0.000:0.000:0.005:0.270	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP	-	no_errors
BRCA2	675	genome.wustl.edu	37	13	32905149	32905150	+	Frame_Shift_Del	DEL	AG	AG	-	rs80359680	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	13	32905149	32905150	AG	-	DEL	BRCA2	NM_000059.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.775_776	p.E260fs	0.015:0.026	NULL	HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878	-	no_errors
C10orf82	143379	genome.wustl.edu	37	10	118424328	118424328	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	10	118424328	118424328	C	T	SNP	C10orf82	NM_144661.2	human	genbank	58_37c	-1	predicted	silent	c.405	p.K135	0.652	NULL	NULL	-	no_errors
C14orf177	283598	genome.wustl.edu	37	14	99182541	99182541	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	14	99182541	99182541	G	C	SNP	C14orf177	NM_182560.1	human	genbank	58_37c	+1	provisional	missense	c.13	p.E5Q	0.001	NULL	NULL	-	no_errors
CAMSAP1L1	23271	genome.wustl.edu	37	1	200818319	200818319	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	200818319	200818319	G	T	SNP	CAMSAP1L1	NM_203459.1	human	genbank	58_37c	+1	validated	missense	c.2422	p.A808S	0.969	NULL	superfamily_PRC-barrel domain,HMMPfam_DUF1781,superfamily_Calponin-homology domain CH-domain	-	no_errors
CCNC	892	genome.wustl.edu	37	6	99993065	99993065	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	6	99993065	99993065	C	G	SNP	CCNC	NM_005190.3	human	genbank	58_37c	-1	reviewed	missense	c.720	p.Q240H	1.000	superfamily_Cyclin-like	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors
CDK14	0	genome.wustl.edu	37	7	90377007	90377007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	7	90377007	90377007	C	T	SNP	CDK14	NM_012395.2	human	genbank	58_37c	+1	validated	silent	c.327	p.P109	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_CYTOCHROME_B5_1	-	no_errors
CHERP	10523	genome.wustl.edu	37	19	16652820	16652820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	19	16652820	16652820	G	A	SNP	CHERP	NM_006387.5	human	genbank	58_37c	-1	validated	silent	c.60	p.A20	0.999	HMMPfam_Surp,HMMSmart_SM00648,superfamily_Surp module (SWAP domain Pfam 01805)	HMMPfam_Surp,HMMSmart_SM00648,HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_DUF618,superfamily_ENTH/VHS domain,superfamily_Surp module (SWAP domain Pfam 01805)	-	no_errors
COL4A4	1286	genome.wustl.edu	37	2	227872737	227872737	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	227872737	227872737	C	T	SNP	COL4A4	NM_000092.4	human	genbank	58_37c	-1	reviewed	silent	c.4806	p.L1602	0.966	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like	-	no_errors
DDX11	1663	genome.wustl.edu	37	12	31242378	31242381	+	Frame_Shift_Del	DEL	GCAG	GCAG	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	GCAG	GCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	31242378	31242381	GCAG	-	DEL	DDX11	NM_152438.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.834_837	p.Q279fs	1.000:1.000:1.000:0.979	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EIF5B	9669	genome.wustl.edu	37	2	99999274	99999274	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	99999274	99999274	G	C	SNP	EIF5B	NM_015904.3	human	genbank	58_37c	+1	reviewed	missense	c.2161	p.D721H	1.000	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_Initiation factor IF2/eIF5b domain 3,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ELOVL5	60481	genome.wustl.edu	37	6	53134010	53134010	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	6	53134010	53134010	C	G	SNP	ELOVL5	NM_021814.3	human	genbank	58_37c	-1	provisional	missense	c.815	p.G272A	0.999	NULL	HMMPfam_ELO,PatternScan_ELO	-	no_errors
EML4	27436	genome.wustl.edu	37	2	42557268	42557268	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	42557268	42557268	A	T	SNP	EML4	NM_019063.3	human	genbank	58_37c	+1	validated	missense	c.2867	p.E956V	0.997	NULL	PatternScan_HIS_ACID_PHOSPHAT_2,HMMSmart_SM00320,HMMPfam_HELP,superfamily_WD40 repeat-like,PatternScan_TRYPSIN_SER,PatternScan_EF_HAND_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000215976	0	genome.wustl.edu	37	12	104378945	104378964	+	RNA	DEL	ACACACACACACACACACAC	ACACACACACACACACACAC	-	rs71715051	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	ACACACACACACACACACAC	ACACACACACACACACACAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	104378945	104378964	ACACACACACACACACACAC	-	DEL	ENSG00000215976	ENST00000401157	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.022:0.023:0.025:0.026:0.026:0.026:0.026:0.025:0.024:0.023:0.022:0.020:0.017:0.014:0.016:0.017:0.017:0.017:0.017:0.015	-	-	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16947064	16947064	+	RNA	SNP	G	G	C	rs12041479	by2Hit2Allele	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	16947064	16947064	G	C	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.011	-	-	-	no_errors
ENSG00000246153	0	genome.wustl.edu	37	12	15097402	15097402	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	15097402	15097402	G	C	SNP	ARHGDIB	NM_001175.4	human	genbank	58_37c	-1	validated	intronic	c.406+308	e4+308	0.000	-	-	-	no_errors
FAM171B	165215	genome.wustl.edu	37	2	187616031	187616031	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	187616031	187616031	G	A	SNP	FAM171B	NM_177454.3	human	genbank	58_37c	+1	validated	missense	c.895	p.G299S	1.000	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FGFR4	2264	genome.wustl.edu	37	5	176520707	176520707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	176520707	176520707	G	A	SNP	FGFR4	NM_002011.3	human	genbank	58_37c	+1	reviewed	missense	c.1450	p.A484T	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
FN1	2335	genome.wustl.edu	37	2	216264037	216264037	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	216264037	216264037	C	G	SNP	FN1	NM_212482.1	human	genbank	58_37c	-1	reviewed	missense	c.3291	p.E1097D	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_EGF_1,superfamily_Kringle-like,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Fibronectin type I module	-	no_errors
FREM1	158326	genome.wustl.edu	37	9	14801748	14801748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	14801748	14801748	C	T	SNP	FREM1	NM_144966.5	human	genbank	58_37c	-1	reviewed	missense	c.3596	p.R1199K	0.001	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Cadherin-like,superfamily_C-type lectin-like,PatternScan_SPASE_I_1	-	no_errors
GAS2L3	283431	genome.wustl.edu	37	12	101017635	101017635	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	101017635	101017635	G	C	SNP	GAS2L3	NM_174942.1	human	genbank	58_37c	+1	provisional	missense	c.1052	p.G351A	0.000	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243,superfamily_Calponin-homology domain CH-domain	-	no_errors
GRIN2D	2906	genome.wustl.edu	37	19	48917733	48917733	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	19	48917733	48917733	C	A	SNP	GRIN2D	NM_000836.2	human	genbank	58_37c	+1	reviewed	missense	c.1304	p.A435D	1.000	HMMSmart_PBPe,superfamily_SSF53822,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HEATR1	55127	genome.wustl.edu	37	1	236749563	236749563	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	236749563	236749563	A	C	SNP	HEATR1	NM_018072.4	human	genbank	58_37c	-1	validated	silent	c.1905	p.P635	0.553	NULL	HMMPfam_HEAT,HMMPfam_BP28CT,superfamily_ARM-type_fold	-	no_errors
HMMR	3161	genome.wustl.edu	37	5	162905690	162905690	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	162905690	162905690	G	T	SNP	HMMR	NM_001142556.1	human	genbank	58_37c	+1	reviewed	silent	c.1269	p.G423	1.000	NULL	NULL	-	no_errors
KCNQ5	56479	genome.wustl.edu	37	6	73879506	73879506	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	6	73879506	73879506	A	C	SNP	KCNQ5	NM_019842.3	human	genbank	58_37c	+1	reviewed	missense	c.1506	p.E502D	0.980	HMMPfam_KCNQ_channel	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36869429	36869429	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	20	36869429	36869429	C	A	SNP	KIAA1755	NM_001029864.1	human	genbank	58_37c	-1	predicted	silent	c.1104	p.P368	0.000	NULL	superfamily_Spectrin repeat	-	no_errors
KIF4B	285643	genome.wustl.edu	37	5	154393807	154393807	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	154393807	154393807	A	G	SNP	KIF4B	NM_001099293.1	human	genbank	58_37c	+1	provisional	missense	c.388	p.S130G	0.908	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KSR1	8844	genome.wustl.edu	37	17	25909747	25909747	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	17	25909747	25909747	A	G	SNP	KSR1	NM_014238.1	human	genbank	58_37c	+1	validated	missense	c.185	p.D62G	0.802	NULL	HMMPfam_Pkinase_Tyr,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_SSF57889	-	no_errors
LIG3	3980	genome.wustl.edu	37	17	33323606	33323606	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	17	33323606	33323606	A	G	SNP	LIG3	NM_013975.2	human	genbank	58_37c	+1	reviewed	missense	c.1757	p.Q586R	0.995	HMMPfam_DNA_ligase_A_M,superfamily_DNA ligase/mRNA capping enzyme catalytic domain	HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,HMMPfam_DNA_ligase_A_N,HMMPfam_DNA_ligase_A_C,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A2,PatternScan_DNA_LIGASE_A1,superfamily_DNA ligase/mRNA capping enzyme catalytic domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LOC100287520	0	genome.wustl.edu	37	11	58854594	58854594	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	58854594	58854594	G	C	SNP	LOC100287520	XM_002343089.1	human	genbank	58_37c	+1	model	missense	c.247	p.V83L	0.896	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)	HMMPfam_Gly_acyl_tr_C,HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
LOC100288624	0	genome.wustl.edu	37	3	124223779	124223779	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	3	124223779	124223779	C	A	SNP	LOC100288624	XM_002342367.1	human	genbank	58_37c	-1	model	nonsense	c.217	p.G73*	0.679	NULL	NULL	-	no_errors
LOC646864	646864	genome.wustl.edu	37	19	23031166	23031166	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	19	23031166	23031166	A	C	SNP	LOC646864	XM_001726885.1	human	genbank	58_37c	+1	model	missense	c.194	p.N65T	0.993	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MADD	8567	genome.wustl.edu	37	11	47336775	47336775	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	47336775	47336775	G	T	SNP	MADD	NM_003682.3	human	genbank	58_37c	+1	reviewed	missense	c.4274	p.G1425V	1.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
MAP1A	4130	genome.wustl.edu	37	15	43814046	43814046	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	15	43814046	43814046	G	C	SNP	MAP1A	NM_002373.5	human	genbank	58_37c	+1	reviewed	missense	c.375	p.K125N	1.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAP6	4135	genome.wustl.edu	37	11	75298782	75298782	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	75298782	75298782	G	C	SNP	MAP6	NM_033063.1	human	genbank	58_37c	-1	reviewed	silent	c.1764	p.V588	0.000	NULL	HMMPfam_STOP	-	no_errors
MMP25	64386	genome.wustl.edu	37	16	3107152	3107152	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	16	3107152	3107152	C	A	SNP	MMP25	NM_022468.4	human	genbank	58_37c	+1	reviewed	silent	c.780	p.G260	0.448	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486	superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486	-	no_errors
MYCBP2	23077	genome.wustl.edu	37	13	77862348	77862348	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	13	77862348	77862348	G	C	SNP	MYCBP2	NM_015057.4	human	genbank	58_37c	-1	validated	nonsense	c.428	p.S143*	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box	-	no_errors
MYH7	4625	genome.wustl.edu	37	14	23884326	23884326	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	14	23884326	23884326	G	A	SNP	MYH7	NM_000257.2	human	genbank	58_37c	-1	reviewed	nonsense	c.5437	p.Q1813*	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO1E	4643	genome.wustl.edu	37	15	59470680	59470680	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	15	59470680	59470680	C	A	SNP	MYO1E	NM_004998.2	human	genbank	58_37c	-1	validated	missense	c.1961	p.G654V	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_TH1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NAT6	24142	genome.wustl.edu	37	3	50334919	50334919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	3	50334919	50334919	G	A	SNP	NAT6	NM_012191.2	human	genbank	58_37c	-1	provisional	silent	c.42	p.T14	0.005	NULL	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	-	no_errors
OR13C2	392376	genome.wustl.edu	37	9	107367295	107367295	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	107367295	107367295	A	C	SNP	OR13C2	NM_001004481.1	human	genbank	58_37c	-1	provisional	missense	c.614	p.L205W	0.020	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR6N1	128372	genome.wustl.edu	37	1	158735696	158735696	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	158735696	158735696	A	T	SNP	OR6N1	NM_001005185.1	human	genbank	58_37c	-1	provisional	nonsense	c.777	p.Y259*	0.985	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PABPC4	8761	genome.wustl.edu	37	1	40028055	40028055	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	40028055	40028055	C	G	SNP	PABPC4	NM_001135653.1	human	genbank	58_37c	-1	reviewed	missense	c.1702	p.E568Q	1.000	HMMPfam_PABP,superfamily_PABP_HYD	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,superfamily_SSF54928	-	no_errors
PANX3	116337	genome.wustl.edu	37	11	124489690	124489690	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	124489690	124489690	G	A	SNP	PANX3	NM_052959.2	human	genbank	58_37c	+1	reviewed	silent	c.1038	p.L346	1.000	NULL	NULL	-	no_errors
PIWIL2	55124	genome.wustl.edu	37	8	22173773	22173788	+	Frame_Shift_Del	DEL	ATCGGGATGGATGTTT	ATCGGGATGGATGTTT	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	ATCGGGATGGATGTTT	ATCGGGATGGATGTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	8	22173773	22173788	ATCGGGATGGATGTTT	-	DEL	PIWIL2	NM_001135721.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.2224_2239	p.I742fs	1.000:1.000:0.995:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.994:1.000	HMMPfam_Piwi,superfamily_Ribonuclease H-like	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,superfamily_PAZ domain	-	no_errors
PKHD1L1	93035	genome.wustl.edu	37	8	110503282	110503282	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	8	110503282	110503282	G	C	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	missense	c.10066	p.D3356H	1.000	HMMSmart_SM00710,superfamily_Pectin lyase-like	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
PRAMEF2	65122	genome.wustl.edu	37	1	12920065	12920065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	12920065	12920065	C	T	SNP	PRAMEF2	NM_023014.1	human	genbank	58_37c	+1	provisional	missense	c.805	p.L269F	0.011	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRUNE2	158471	genome.wustl.edu	37	9	79324701	79324701	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	9	79324701	79324701	T	A	SNP	PRUNE2	NM_015225.2	human	genbank	58_37c	-1	validated	missense	c.2489	p.D830V	0.957	NULL	HMMSmart_SEC14,superfamily_CRAL_TRIO_C,superfamily_Ferritin/RR_like,superfamily_SSF64182	-	no_errors
PTPN22	26191	genome.wustl.edu	37	1	114372636	114372636	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	114372636	114372636	C	A	SNP	PTPN22	NM_015967.4	human	genbank	58_37c	-1	reviewed	missense	c.2069	p.R690L	0.574	NULL	HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799	-	no_errors
PTPRF	5792	genome.wustl.edu	37	1	44085063	44085063	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	44085063	44085063	G	A	SNP	PTPRF	NM_002840.3	human	genbank	58_37c	+1	reviewed	missense	c.4751	p.R1584Q	1.000	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SALL4	57167	genome.wustl.edu	37	20	50407393	50407393	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	20	50407393	50407393	C	T	SNP	SALL4	NM_020436.3	human	genbank	58_37c	-1	reviewed	silent	c.1629	p.E543	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
SCYL2	55681	genome.wustl.edu	37	12	100720449	100720449	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	12	100720449	100720449	A	G	SNP	SCYL2	NM_017988.4	human	genbank	58_37c	+1	provisional	missense	c.1559	p.D520G	1.000	superfamily_ARM repeat	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,HMMPfam_Pkinase	-	no_errors
SGCA	6442	genome.wustl.edu	37	17	48252661	48252661	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	17	48252661	48252661	G	T	SNP	SGCA	NM_000023.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1027	p.E343*	1.000	HMMPfam_Sarcoglycan_2	HMMSmart_SM00736,HMMPfam_Sarcoglycan_2,superfamily_Cadherin-like	-	no_errors
SMR3B	10879	genome.wustl.edu	37	4	71255687	71255687	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	4	71255687	71255687	C	G	SNP	SMR3B	ENST00000381030	human	ensembl	58_37c	+1	known	silent	c.195	p.S65	0.001	NULL	NULL	-	no_errors
SNAI2	6591	genome.wustl.edu	37	8	49832526	49832542	+	Frame_Shift_Del	DEL	CAAGGTAATGTGTGGGT	CAAGGTAATGTGTGGGT	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	CAAGGTAATGTGTGGGT	CAAGGTAATGTGTGGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	8	49832526	49832542	CAAGGTAATGTGTGGGT	-	DEL	SNAI2	NM_003068.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.554_538	p.T180fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.961:0.945:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SPTBN2	6712	genome.wustl.edu	37	11	66455032	66455032	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	66455032	66455032	C	G	SNP	SPTBN2	NM_006946.2	human	genbank	58_37c	-1	reviewed	missense	c.6588	p.Q2196H	1.000	HMMSmart_SM00150	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
TAF5L	27097	genome.wustl.edu	37	1	229750159	229750159	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	229750159	229750159	T	G	SNP	TAF5L	NM_014409.3	human	genbank	58_37c	-1	reviewed	missense	c.71	p.D24A	1.000	NULL	HMMSmart_SM00320,HMMPfam_TFIID_90kDa,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TARS	6897	genome.wustl.edu	37	5	33455166	33455166	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	33455166	33455166	A	C	SNP	TARS	NM_152295.3	human	genbank	58_37c	+1	reviewed	missense	c.570	p.E190D	0.620	superfamily_ThrRS/AlaRS common domain	HMMPfam_tRNA-synt_2b,HMMPfam_TGS,HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS,superfamily_TGS-like,HMMPfam_tRNA_SAD,superfamily_ThrRS/AlaRS common domain,superfamily_Class II aaRS and biotin synthetases	-	no_errors
TEP1	7011	genome.wustl.edu	37	14	20872808	20872808	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	14	20872808	20872808	G	C	SNP	TEP1	NM_007110.4	human	genbank	58_37c	-1	reviewed	missense	c.994	p.L332V	1.000	HMMPfam_TROVE	HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TET2	54790	genome.wustl.edu	37	4	106155363	106155363	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	4	106155363	106155363	T	C	SNP	TET2	NM_001127208.1	human	genbank	58_37c	+1	validated	silent	c.264	p.C88	0.017	NULL	NULL	-	no_errors
TKTL1	8277	genome.wustl.edu	37	X	153524215	153524215	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	X	153524215	153524215	G	T	SNP	TKTL1	NM_012253.3	human	genbank	58_37c	+1	validated	missense	c.3	p.M1I	0.295	NULL	HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	-	no_errors
TNPO1	3842	genome.wustl.edu	37	5	72196887	72196887	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	5	72196887	72196887	G	C	SNP	TNPO1	NM_002270.3	human	genbank	58_37c	+1	reviewed	missense	c.2501	p.S834T	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_IBN_N,superfamily_ARM repeat	-	no_errors
TNS1	7145	genome.wustl.edu	37	2	218669195	218669195	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	2	218669195	218669195	C	A	SNP	TNS1	NM_022648.4	human	genbank	58_37c	-1	reviewed	missense	c.5195	p.G1732V	1.000	HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729	HMMPfam_SH2,HMMSmart_SH2,HMMSmart_PTB,superfamily_C2_CaLB,HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF55550	-	no_errors
TRAPPC10	7109	genome.wustl.edu	37	21	45483643	45483643	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	21	45483643	45483643	G	A	SNP	TRAPPC10	NM_003274.4	human	genbank	58_37c	+1	reviewed	missense	c.1015	p.V339M	1.000	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
TRPM5	29850	genome.wustl.edu	37	11	2433403	2433403	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	11	2433403	2433403	C	G	SNP	TRPM5	NM_014555.3	human	genbank	58_37c	-1	validated	missense	c.2436	p.M812I	1.000	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19497282	19497282	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	19497282	19497282	G	C	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	missense	c.3617	p.S1206C	1.000	NULL	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215916652	215916652	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	215916652	215916652	C	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	silent	c.11415	p.V3805	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
USP33	23032	genome.wustl.edu	37	1	78187538	78187538	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	1	78187538	78187538	G	C	SNP	USP33	NM_015017.3	human	genbank	58_37c	-1	validated	missense	c.1728	p.F576L	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,HMMPfam_zf-UBP,HMMSmart_SM00290,HMMSmart_SM00695,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
USP7	7874	genome.wustl.edu	37	16	8988986	8988986	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	16	8988986	8988986	C	G	SNP	USP7	NM_003470.2	human	genbank	58_37c	-1	validated	missense	c.2941	p.D981H	1.000	NULL	HMMPfam_UCH,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
ZNF385D	79750	genome.wustl.edu	37	3	21462907	21462907	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cbdea951-3dc9-42c2-bfdd-3796c30e928e	69ab5cb1-eaab-4fc0-a45e-85e9fad03b28	3	21462907	21462907	C	T	SNP	ZNF385D	NM_024697.2	human	genbank	58_37c	-1	validated	silent	c.987	p.K329	1.000	NULL	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2	-	no_errors
