Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
APLP1	333	genome.wustl.edu	37	19	36370038	36370038	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	19	36370038	36370038	C	T	SNP	APLP1	NM_001024807.1	human	genbank	58_37c	+1	reviewed	silent	c.1776	p.G592	0.674	NULL	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),superfamily_A heparin-binding domain,HMMPfam_APP_amyloid,PatternScan_A4_EXTRA,PatternScan_A4_INTRA,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	-	no_errors
C10orf81	79949	genome.wustl.edu	37	10	115540376	115540376	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	10	115540376	115540376	A	G	SNP	C10orf81	ENST00000369312	human	ensembl	58_37c	+1	known	missense	c.937	p.I313V	0.994	NULL	NULL	-	no_errors
C14orf115	55237	genome.wustl.edu	37	14	74824804	74824804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	14	74824804	74824804	C	T	SNP	C14orf115	NM_018228.2	human	genbank	58_37c	+1	validated	missense	c.1318	p.R440W	1.000	NULL	HMMPfam_Transposase_8	-	no_errors
COX6C	1345	genome.wustl.edu	37	8	100899792	100899792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	8	100899792	100899792	C	A	SNP	COX6C	NM_004374.2	human	genbank	58_37c	-1	reviewed	missense	c.169	p.D57Y	1.000	HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc	HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc	-	no_errors
CRHR1	1394	genome.wustl.edu	37	17	43912159	43912159	+	Missense_Mutation	SNP	G	G	C	rs147754108	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	17	43912159	43912159	G	C	SNP	CRHR1	ENST00000339069	human	ensembl	58_37c	+1	known	missense	c.838	p.E280Q	0.000	NULL	HMMPfam_7tm_2	-	no_errors
DLC1	10395	genome.wustl.edu	37	8	12957977	12957977	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	8	12957977	12957977	G	A	SNP	DLC1	NM_182643.2	human	genbank	58_37c	-1	reviewed	silent	c.1869	p.S623	0.998	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like	-	no_errors
FCRL1	115350	genome.wustl.edu	37	1	157773658	157773658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	1	157773658	157773658	C	T	SNP	FCRL1	NM_052938.4	human	genbank	58_37c	-1	reviewed	missense	c.296	p.R99K	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
FNDC3A	22862	genome.wustl.edu	37	13	49712942	49712945	+	Splice_Site	DEL	GTAA	GTAA	-	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	GTAA	GTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	13	49712942	49712945	GTAA	-	DEL	FNDC3A	NM_001079673.1	human	genbank	58_37c	+1	validated	splice_site_del	c.819+1_819+1	e6+1	1.000:1.000:1.000:1.000	-	-	-	no_errors
IL12RB1	3594	genome.wustl.edu	37	19	18186597	18186597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	19	18186597	18186597	G	A	SNP	IL12RB1	NM_005535.1	human	genbank	58_37c	-1	reviewed	missense	c.662	p.S221F	0.627	superfamily_Fibronectin type III	PatternScan_N6_MTASE,PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
MAN2A1	4124	genome.wustl.edu	37	5	109091135	109091135	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	5	109091135	109091135	T	C	SNP	MAN2A1	NM_002372.2	human	genbank	58_37c	+1	reviewed	silent	c.813	p.H271	1.000	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl	HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
PAEP	5047	genome.wustl.edu	37	9	138456155	138456155	+	Missense_Mutation	SNP	C	C	A	rs74725576	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	9	138456155	138456155	C	A	SNP	PAEP	NM_001018049.1	human	genbank	58_37c	+1	reviewed	missense	c.376	p.Q126K	0.001	HMMPfam_Lipocalin,superfamily_Lipocalins	HMMPfam_Lipocalin,PatternScan_LIPOCALIN,superfamily_Lipocalins	-	no_errors
PDS5B	23047	genome.wustl.edu	37	13	33233398	33233398	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	13	33233398	33233398	A	T	SNP	PDS5B	NM_015032.3	human	genbank	58_37c	+1	reviewed	missense	c.605	p.N202I	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat,HMMPfam_AT_hook	-	no_errors
POLE2	5427	genome.wustl.edu	37	14	50122403	50122403	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	14	50122403	50122403	C	T	SNP	POLE2	NM_002692.2	human	genbank	58_37c	-1	provisional	missense	c.914	p.R305H	0.996	HMMPfam_DNA_pol_E_B	HMMPfam_DNA_pol_E_B	-	no_errors
RPP30	10556	genome.wustl.edu	37	10	92654535	92654535	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	10	92654535	92654535	A	G	SNP	RPP30	NM_001104546.1	human	genbank	58_37c	+1	validated	missense	c.436	p.I146V	1.000	HMMPfam_RNase_P_p30,superfamily_PHP domain-like	HMMPfam_RNase_P_p30,superfamily_PHP domain-like	-	no_errors
SERPINE1	5054	genome.wustl.edu	37	7	100776989	100776989	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	7	100776989	100776989	G	A	SNP	SERPINE1	NM_000602.3	human	genbank	58_37c	+1	reviewed	silent	c.714	p.T238	0.706	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
STAC	6769	genome.wustl.edu	37	3	36534691	36534691	+	Missense_Mutation	SNP	G	G	A	rs145771131	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	3	36534691	36534691	G	A	SNP	STAC	NM_003149.1	human	genbank	58_37c	+1	provisional	missense	c.736	p.G246R	0.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_SH3_2,superfamily_Cysteine-rich domain	-	no_errors
STAP1	26228	genome.wustl.edu	37	4	68449419	68449419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	4	68449419	68449419	G	C	SNP	STAP1	NM_012108.2	human	genbank	58_37c	+1	reviewed	missense	c.658	p.D220H	1.000	HMMSmart_SM00252,superfamily_SH2 domain	HMMSmart_SM00252,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
SVIL	6840	genome.wustl.edu	37	10	29813441	29813441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	10	29813441	29813441	C	T	SNP	SVIL	NM_021738.2	human	genbank	58_37c	-1	reviewed	missense	c.2546	p.R849H	1.000	NULL	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
TET3	200424	genome.wustl.edu	37	2	74275539	74275539	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	2	74275539	74275539	G	A	SNP	TET3	NM_144993.1	human	genbank	58_37c	+1	provisional	splice_site	c.2089+1	e1+1	1.000	-	-	-	no_errors
TEX13B	56156	genome.wustl.edu	37	X	107224730	107224730	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	X	107224730	107224730	G	A	SNP	TEX13B	NM_031273.2	human	genbank	58_37c	-1	reviewed	silent	c.519	p.A173	0.000	NULL	NULL	-	no_errors
TMEM110	375346	genome.wustl.edu	37	3	52876847	52876847	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	3	52876847	52876847	G	-	DEL	TMEM110	NM_198563.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.748	p.H250fs	1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	17	7578403	7578403	C	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.527	p.C176F	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
