Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AADACL4	343066	genome.wustl.edu	37	1	12726571	12726571	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	1	12726571	12726571	G	A	SNP	AADACL4	NM_001013630.1	human	genbank	58_37c	+1	provisional	missense	c.1049	p.R350H	0.870	HMMPfam_Abhydrolase_3,superfamily_SSF53474	PatternScan_LIPASE_GDXG_HIS,PatternScan_LIPASE_GDXG_SER,HMMPfam_Abhydrolase_3,superfamily_SSF53474	-	no_errors
APOB	338	genome.wustl.edu	37	2	21236081	21236081	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	2	21236081	21236081	G	A	SNP	APOB	NM_000384.2	human	genbank	58_37c	-1	reviewed	silent	c.4167	p.Y1389	0.134	NULL	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain	-	no_errors
ARFGEF2	10564	genome.wustl.edu	37	20	47632847	47632847	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	20	47632847	47632847	C	T	SNP	ARFGEF2	NM_006420.2	human	genbank	58_37c	+1	reviewed	missense	c.4210	p.H1404Y	1.000	superfamily_ARM-type_fold	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors
AXIN1	8312	genome.wustl.edu	37	16	396381	396381	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	16	396381	396381	C	T	SNP	AXIN1	NM_003502.2	human	genbank	58_37c	-1	reviewed	silent	c.645	p.S215	0.854	superfamily_Regulator of G-protein signaling RGS	HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_DIX,HMMSmart_SM00021,HMMPfam_Axin_b-cat_bind,superfamily_Regulator of G-protein signaling RGS	-	no_errors
BTBD3	22903	genome.wustl.edu	37	20	11903291	11903291	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	20	11903291	11903291	T	C	SNP	BTBD3	NM_014962.2	human	genbank	58_37c	+1	validated	silent	c.546	p.Y182	1.000	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_PHR,HMMPfam_BTB	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68844139	68844139	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	16	68844139	68844139	G	A	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	missense	c.727	p.E243K	0.999	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CEP68	23177	genome.wustl.edu	37	2	65298871	65298871	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	2	65298871	65298871	C	T	SNP	CEP68	NM_015147.2	human	genbank	58_37c	+1	validated	missense	c.641	p.A214V	0.000	NULL	superfamily_Spectrin repeat	-	no_errors
CHD7	55636	genome.wustl.edu	37	8	61763087	61763087	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	8	61763087	61763087	G	A	SNP	CHD7	NM_017780.2	human	genbank	58_37c	+1	reviewed	missense	c.5440	p.A1814T	0.765	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DRD5	1816	genome.wustl.edu	37	4	9784610	9784610	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	4	9784610	9784610	C	A	SNP	DRD5	NM_000798.4	human	genbank	58_37c	+1	reviewed	silent	c.957	p.V319	0.993	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ENSG00000245681	0	genome.wustl.edu	37	6	30654072	30654073	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	6	30654072	30654073	TG	-	DEL	ENSG00000245681	ENST00000501727	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.055:0.121	-	-	-	no_errors
GPR83	10888	genome.wustl.edu	37	11	94113925	94113925	+	Missense_Mutation	SNP	C	C	T	rs149566608	byFrequency	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	94113925	94113925	C	T	SNP	GPR83	NM_016540.3	human	genbank	58_37c	-1	validated	missense	c.662	p.R221H	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
LOC100287439	0	genome.wustl.edu	37	3	48454157	48454157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	3	48454157	48454157	G	A	SNP	LOC100287439	XM_002342333.1	human	genbank	58_37c	+1	model	missense	c.64	p.E22K	1.000	NULL	NULL	-	no_errors
LOC643563	643563	genome.wustl.edu	37	X	97644573	97644573	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	X	97644573	97644573	C	A	SNP	LOC643563	XM_926863.2	human	genbank	58_37c	+1	model	silent	c.66	p.T22	0.782	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	pseudogene
NCOR2	9612	genome.wustl.edu	37	12	124882708	124882709	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	12	124882708	124882709	-	T	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1833_1832	p.S612fs	1.000:1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
PLCE1	51196	genome.wustl.edu	37	10	95791949	95791949	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	10	95791949	95791949	G	A	SNP	PLCE1	NM_016341.3	human	genbank	58_37c	+1	reviewed	silent	c.1146	p.P382	0.000	superfamily_Ras GEF	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
PPFIA1	8500	genome.wustl.edu	37	11	70189979	70189979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	70189979	70189979	G	A	SNP	PPFIA1	NM_003626.2	human	genbank	58_37c	+1	reviewed	missense	c.1912	p.A638T	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PRKCB	5579	genome.wustl.edu	37	16	24202462	24202462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	16	24202462	24202462	C	T	SNP	PRKCB	NM_002738.6	human	genbank	58_37c	+1	reviewed	missense	c.1774	p.R592C	1.000	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
PTPRZ1	5803	genome.wustl.edu	37	7	121651597	121651597	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	7	121651597	121651597	C	T	SNP	PTPRZ1	NM_002851.2	human	genbank	58_37c	+1	reviewed	missense	c.2497	p.R833C	1.000	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SLC22A12	116085	genome.wustl.edu	37	11	64368333	64368333	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	64368333	64368333	G	C	SNP	SLC22A12	NM_144585.2	human	genbank	58_37c	+1	reviewed	silent	c.1521	p.L507	0.180	superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
TRMT112	51504	genome.wustl.edu	37	11	64084586	64084586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	11	64084586	64084586	C	T	SNP	TRMT112	NM_016404.1	human	genbank	58_37c	-1	provisional	missense	c.214	p.E72K	0.045	HMMPfam_Trm112p	HMMPfam_Trm112p	-	no_errors
VCPIP1	80124	genome.wustl.edu	37	8	67578717	67578725	+	In_Frame_Del	DEL	ATCGAACAG	ATCGAACAG	-	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	ATCGAACAG	ATCGAACAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	8	67578717	67578725	ATCGAACAG	-	DEL	VCPIP1	NM_025054.4	human	genbank	58_37c	-1	validated	in_frame_del	c.477_469	p.LFD157in_frame_del	1.000:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_OTU	-	no_errors
VIL1	7429	genome.wustl.edu	37	2	219294164	219294164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	2	219294164	219294164	G	A	SNP	VIL1	NM_007127.2	human	genbank	58_37c	+1	reviewed	missense	c.724	p.D242N	1.000	NULL	HMMPfam_VHP,HMMSmart_VHP,superfamily_VHP,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753,superfamily_SSF82754	-	no_errors
ZMYND15	84225	genome.wustl.edu	37	17	4645075	4645075	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A091-01A-11W-A019-09	TCGA-A8-A091-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	6618f367-c782-43a0-b5c8-a53d9bda6722	9732d7d3-7a55-4eba-9a18-76e59ca082a6	17	4645075	4645075	C	A	SNP	ZMYND15	NM_001136046.1	human	genbank	58_37c	+1	provisional	missense	c.791	p.P264H	1.000	NULL	HMMPfam_zf-MYND	-	no_errors
