Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFF3	0	genome.wustl.edu	37	2	100194818	100194820	+	In_Frame_Del	DEL	GCA	GCA	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	100194818	100194820	GCA	-	DEL	AFF3	NM_001025108.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.2964_2962	p.C988in_frame_del	1.000:1.000:1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AFF3	0	genome.wustl.edu	37	2	100194823	100194824	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	100194823	100194824	CC	-	DEL	AFF3	NM_001025108.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2959_2958	p.D987fs	1.000:0.993	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AKD1	0	genome.wustl.edu	37	6	109850199	109850201	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	6	109850199	109850201	AAC	-	DEL	AKD1	ENST00000355283	human	ensembl	58_37c	-1	known	in_frame_del	c.885_883	p.V295in_frame_del	0.003:0.000:0.000	NULL	HMMPfam_ADK,HMMPfam_YHS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANKRD12	0	genome.wustl.edu	37	18	9256071	9256074	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	AAAC	AAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	18	9256071	9256074	AAAC	-	DEL	ANKRD12	NM_015208.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.2806_2809	p.K936fs	0.913:0.899:0.061:0.032	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ASB13	0	genome.wustl.edu	37	10	5682712	5682712	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	10	5682712	5682712	T	G	SNP	ASB13	NM_024701.3	human	genbank	58_37c	-1	reviewed	missense	c.791	p.K264T	1.000	HMMPfam_SOCS_box	HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
BIRC8	0	genome.wustl.edu	37	19	53793429	53793429	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	53793429	53793429	T	C	SNP	BIRC8	NM_033341.3	human	genbank	58_37c	-1	validated	missense	c.199	p.K67E	0.068	HMMPfam_BIR,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,superfamily_Inhibitor of apoptosis (IAP) repeat	HMMPfam_BIR,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,HMMSmart_SM00184,superfamily_Inhibitor of apoptosis (IAP) repeat	-	no_errors
C12orf65	0	genome.wustl.edu	37	12	123738230	123738230	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	12	123738230	123738230	C	T	SNP	C12orf65	NM_001143905.1	human	genbank	58_37c	+1	validated	silent	c.9	p.T3	0.002	NULL	HMMPfam_RF-1,superfamily_Release factor (Pfam 00472)	-	no_errors
CAPN7	0	genome.wustl.edu	37	3	15270481	15270481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	3	15270481	15270481	A	G	SNP	CAPN7	NM_014296.2	human	genbank	58_37c	+1	reviewed	missense	c.853	p.T285A	1.000	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_CysPc,HMMSmart_calpain_III,superfamily_Peptidase_C2,HMMPfam_MIT,HMMSmart_MIT,superfamily_SSF54001	-	no_errors
CASZ1	0	genome.wustl.edu	37	1	10719985	10719985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	10719985	10719985	G	A	SNP	CASZ1	NM_001079843.1	human	genbank	58_37c	-1	validated	missense	c.1114	p.R372C	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CSF1R	0	genome.wustl.edu	37	5	149449828	149449828	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	149449828	149449828	G	A	SNP	CSF1R	NM_005211.3	human	genbank	58_37c	-1	reviewed	silent	c.1236	p.N412	0.019	HMMPfam_ig,superfamily_SSF48726	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
CSMD1	0	genome.wustl.edu	37	8	2820779	2820779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	8	2820779	2820779	C	T	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	missense	c.9422	p.R3141H	0.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DCHS2	0	genome.wustl.edu	37	4	155242003	155242003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	4	155242003	155242003	C	T	SNP	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	silent	c.3183	p.V1061	0.980	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DYNC1H1	0	genome.wustl.edu	37	14	102467927	102467927	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	14	102467927	102467927	G	C	SNP	DYNC1H1	NM_001376.4	human	genbank	58_37c	+1	reviewed	missense	c.4451	p.C1484S	1.000	HMMPfam_DHC_N2	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540	-	no_errors
ENSG00000221060	0	genome.wustl.edu	37	14	70270922	70270922	+	RNA	DEL	T	T	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	14	70270922	70270922	T	-	DEL	ENSG00000221060	ENST00000408133	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.003	-	-	-	no_errors
ENSG00000229429	0	genome.wustl.edu	37	7	99809201	99809201	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	7	99809201	99809201	C	A	SNP	ENSG00000229429	ENST00000448005	human	ensembl	58_37c	-1	known	splice_site	c.1-1	e1-1	0.002	-	-	-	no_errors
ENSG00000249401	0	genome.wustl.edu	37	1	120076815	120076815	+	RNA	SNP	A	A	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	120076815	120076815	A	G	SNP	ENSG00000249401	ENST00000506663	human	ensembl	58_37c	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
FUBP3	0	genome.wustl.edu	37	9	133493263	133493263	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	133493263	133493263	G	T	SNP	FUBP3	NM_003934.1	human	genbank	58_37c	+1	validated	missense	c.647	p.G216V	1.000	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
FUBP3	0	genome.wustl.edu	37	9	133498185	133498185	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	133498185	133498185	C	T	SNP	FUBP3	NM_003934.1	human	genbank	58_37c	+1	validated	nonsense	c.862	p.Q288*	1.000	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
GPR137C	0	genome.wustl.edu	37	14	53098946	53098946	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	14	53098946	53098946	T	C	SNP	GPR137C	NM_001099652.1	human	genbank	58_37c	+1	provisional	silent	c.786	p.C262	1.000	NULL	NULL	-	no_errors
HLA-B	0	genome.wustl.edu	37	6	31324601	31324602	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	6	31324601	31324602	-	A	INS	HLA-B	NM_005514.6	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.207_206	p.E69fs	0.090:0.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
IRF5	0	genome.wustl.edu	37	7	128587352	128587381	+	Splice_Site	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	7	128587352	128587381	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	DEL	IRF5	NM_001098627.2	human	genbank	58_37c	+1	reviewed	splice_site_del	c.501+1_501+1	e5+1	0.766:0.707:0.638:0.562:0.538:0.511:0.480:0.444:0.402:0.360:0.317:0.273:0.262:0.251:0.239:0.226:0.213:0.199:0.185:0.170:0.155:0.138:0.122:0.120:0.118:0.116:0.113:0.110:0.107:0.104	-	-	-	no_errors
ITGAV	0	genome.wustl.edu	37	2	187540366	187540381	+	Frame_Shift_Del	DEL	CCAAGTTGGGAGATTA	CCAAGTTGGGAGATTA	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	CCAAGTTGGGAGATTA	CCAAGTTGGGAGATTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	187540366	187540381	CCAAGTTGGGAGATTA	-	DEL	ITGAV	NM_002210.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2742_2757	p.C914fs	1.000:1.000:1.000:1.000:1.000:1.000:0.989:1.000:0.999:0.374:0.698:0.700:0.529:0.950:0.960:0.845	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
LOC100287354	0	genome.wustl.edu	37	9	68455133	68455133	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	68455133	68455133	C	T	SNP	LOC100287354	XM_002344262.1	human	genbank	58_37c	+1	model	silent	c.252	p.A84	0.000	NULL	PatternScan_COX1_CUB	-	no_errors
MCC	0	genome.wustl.edu	37	5	112384726	112384736	+	Frame_Shift_Del	DEL	GTCACTGGGCA	GTCACTGGGCA	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	GTCACTGGGCA	GTCACTGGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	112384726	112384736	GTCACTGGGCA	-	DEL	MCC	ENST00000514701	human	ensembl	58_37c	-1	known	frame_shift_del	c.1759_1749	p.A584fs	0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.012:0.025:0.020:0.016	NULL	HMMPfam_MCC-bdg_PDZ	-	no_errors
MRC1L1	0	genome.wustl.edu	37	10	17940260	17940260	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	10	17940260	17940260	C	T	SNP	MRC1L1	NM_001009567.1	human	genbank	58_37c	+1	reviewed	silent	c.3465	p.I1155	0.993	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Ricin B-like lectins,superfamily_Kringle-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
MYEOV	0	genome.wustl.edu	37	11	69063518	69063519	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	11	69063518	69063519	-	A	INS	MYEOV	NM_138768.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.601_602	p.V201fs	0.000:0.000	NULL	NULL	-	no_errors
NEDD4L	0	genome.wustl.edu	37	18	56033400	56033400	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	18	56033400	56033400	T	A	SNP	NEDD4L	NM_001144967.1	human	genbank	58_37c	+1	validated	missense	c.2003	p.F668Y	1.000	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
NEURL4	0	genome.wustl.edu	37	17	7226882	7226882	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	17	7226882	7226882	C	G	SNP	NEURL4	NM_032442.2	human	genbank	58_37c	-1	validated	missense	c.2339	p.G780A	1.000	HMMPfam_Neuralized,HMMSmart_SM00588	HMMPfam_Neuralized,HMMSmart_SM00588	-	no_errors
NXT2	0	genome.wustl.edu	37	X	108785738	108785738	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	X	108785738	108785738	C	G	SNP	NXT2	NM_018698.3	human	genbank	58_37c	+1	provisional	missense	c.415	p.Q139E	1.000	HMMPfam_NTF2,superfamily_SSF54427	HMMPfam_NTF2,superfamily_SSF54427	-	no_errors
PALM2-AKAP2	0	genome.wustl.edu	37	9	112694275	112694275	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	9	112694275	112694275	T	A	SNP	PALM2-AKAP2	NM_007203.4	human	genbank	58_37c	+1	validated	missense	c.463	p.S155T	0.683	NULL	HMMPfam_RII_binding_1	-	no_errors
PCDHB12	0	genome.wustl.edu	37	5	140590170	140590170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	140590170	140590170	C	T	SNP	PCDHB12	NM_018932.3	human	genbank	58_37c	+1	reviewed	missense	c.1691	p.P564L	1.000	superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PDE9A	0	genome.wustl.edu	37	21	44119099	44119099	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	21	44119099	44119099	T	-	DEL	PDE9A	NM_002606.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.240	p.V81fs	0.086	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
PKN1	0	genome.wustl.edu	37	19	14569083	14569083	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	14569083	14569083	C	A	SNP	PKN1	NM_213560.1	human	genbank	58_37c	+1	reviewed	silent	c.1333	p.R445	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_HR1,HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00742,superfamily_HR1 repeat,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
PLEKHH3	0	genome.wustl.edu	37	17	40826429	40826429	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	17	40826429	40826429	T	C	SNP	PLEKHH3	NM_024927.4	human	genbank	58_37c	-1	validated	splice_site	c.163-2	e2-2	0.946	-	-	-	no_errors
PMEPA1	0	genome.wustl.edu	37	20	56228121	56228121	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	20	56228121	56228121	C	G	SNP	PMEPA1	NM_020182.3	human	genbank	58_37c	-1	validated	missense	c.286	p.E96Q	0.997	NULL	NULL	-	no_errors
RGS7	0	genome.wustl.edu	37	1	241094016	241094016	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	241094016	241094016	C	T	SNP	RGS7	NM_002924.4	human	genbank	58_37c	-1	validated	splice_site	c.385+1	e5+1	1.000	-	-	-	no_errors
RP1L1	0	genome.wustl.edu	37	8	10467579	10467581	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	8	10467579	10467581	TTC	-	DEL	RP1L1	NM_178857.5	human	genbank	58_37c	-1	validated	in_frame_del	c.4029_4027	p.E1343in_frame_del	0.003:0.005:0.013	NULL	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
SEPT2	0	genome.wustl.edu	37	2	242276852	242276852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	2	242276852	242276852	G	A	SNP	SEPT2	NM_001008491.1	human	genbank	58_37c	+1	validated	missense	c.397	p.E133K	1.000	HMMPfam_Septin,superfamily_SSF52540	HMMPfam_Septin,superfamily_SSF52540	-	no_errors
SLC13A3	0	genome.wustl.edu	37	20	45188713	45188713	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	20	45188713	45188713	T	C	SNP	SLC13A3	NM_022829.4	human	genbank	58_37c	-1	reviewed	missense	c.1757	p.N586S	0.261	NULL	HMMPfam_Na_sulph_symp	-	no_errors
SLC22A15	0	genome.wustl.edu	37	1	116609327	116609327	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	116609327	116609327	C	T	SNP	SLC22A15	NM_018420.2	human	genbank	58_37c	+1	validated	nonsense	c.1552	p.Q518*	0.994	NULL	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter	-	no_errors
SPANXN3	0	genome.wustl.edu	37	X	142596806	142596806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	X	142596806	142596806	G	A	SNP	SPANXN3	NM_001009609.2	human	genbank	58_37c	-1	validated	silent	c.264	p.G88	0.002	HMMPfam_SPAN-X	HMMPfam_SPAN-X	-	no_errors
SRA1	0	genome.wustl.edu	37	5	139931628	139931629	+	Frame_Shift_Ins	INS	-	-	GT	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	5	139931628	139931629	-	GT	INS	SRA1	NM_001035235.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.329_328	p.V110fs	0.974:0.951	HMMPfam_SRA1	HMMPfam_SRA1	-	no_errors
SRCAP	0	genome.wustl.edu	37	16	30736370	30736371	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	16	30736370	30736371	-	C	INS	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.5625_5626	p.P1878fs	1.000:1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TEAD2	0	genome.wustl.edu	37	19	49850472	49850473	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	49850472	49850473	-	G	INS	TEAD2	NM_003598.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.884_883	p.H295fs	0.971:0.961	HMMPfam_TEA	HMMPfam_TEA,HMMSmart_TEA,PatternScan_TEA_1	-	no_errors
THBS3	0	genome.wustl.edu	37	1	155169883	155169883	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	1	155169883	155169883	T	A	SNP	THBS3	NM_007112.3	human	genbank	58_37c	-1	reviewed	missense	c.1730	p.N577I	1.000	HMMPfam_TSP_3,superfamily_TSP type-3 repeat	HMMSmart_SM00179,HMMSmart_SM00210,HMMPfam_TSP_3,HMMSmart_SM00181,HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_TSP type-3 repeat,superfamily_EGF/Laminin	-	no_errors
TIAF1	0	genome.wustl.edu	37	17	27401124	27401124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	17	27401124	27401124	C	T	SNP	TIAF1	NM_004740.3	human	genbank	58_37c	-1	validated	missense	c.94	p.E32K	0.000	NULL	NULL	-	no_errors
TIGD4	0	genome.wustl.edu	37	4	153690942	153690942	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	4	153690942	153690942	C	G	SNP	TIGD4	NM_145720.2	human	genbank	58_37c	-1	reviewed	silent	c.1215	p.L405	0.002	NULL	HMMPfam_DDE,HMMSmart_SM00674,HMMPfam_CENP-B_N,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind	-	no_errors
TMEM143	0	genome.wustl.edu	37	19	48845963	48845963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	48845963	48845963	G	A	SNP	TMEM143	NM_018273.2	human	genbank	58_37c	-1	provisional	missense	c.799	p.P267S	1.000	NULL	NULL	-	no_errors
UBFD1	0	genome.wustl.edu	37	16	23573549	23573549	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	16	23573549	23573549	A	G	SNP	UBFD1	NM_019116.2	human	genbank	58_37c	+1	validated	missense	c.587	p.K196R	1.000	NULL	HMMPfam_ubiquitin,HMMSmart_UBQ,PatternScan_UBIQUITIN_1,superfamily_SSF54236	-	no_errors
ZNF419	0	genome.wustl.edu	37	19	58005412	58005412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	19	58005412	58005412	C	T	SNP	ZNF419	NM_001098491.1	human	genbank	58_37c	+1	validated	missense	c.1490	p.S497F	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF48	0	genome.wustl.edu	37	16	30409119	30409119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09K-01A-11W-A019-09	TCGA-A8-A09K-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8cd75f2-5ee5-4296-a781-a6a16ee94506	065ce36f-67f9-44fe-b58e-a37d74eb2a35	16	30409119	30409119	C	T	SNP	ZNF48	NM_152652.1	human	genbank	58_37c	+1	provisional	missense	c.548	p.S183F	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
