Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CDH23	64072	broad.mit.edu	36	10	73237460	73237460	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171933	exon12	c.G1770A	p.Q590Q	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98733364	98733364	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015652	exon1	c.G2227A	p.D743N	.	.	.
CADM1	23705	broad.mit.edu	36	11	114552475	114552475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014333	exon10	c.G1258A	p.A420T	.	.	.
MAPK8IP1	9479	broad.mit.edu	36	11	45883286	45883286	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005456	exon11	c.G1973A	p.G658E	.	.	.
HNRNPUL2	221092	broad.mit.edu	36	11	62246412	62246412	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079559	exon7	c.A1112C	p.E371A	.	.	.
KCTD21	283219	broad.mit.edu	36	11	77562618	77562618	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029859	exon2	c.G631C	p.V211L	.	.	.
KAT5	10524	broad.mit.edu	36	11	65236444	65236444	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182710	exon1	c.130delT	p.C44fs	.	.	.
TMBIM4	51643	broad.mit.edu	36	12	64827984	64827984	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016056	exon4	c.T317C	p.L106P	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63584526	63584526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015180	exon46	c.G7277A	p.S2426N	.	.	.
OR4F15	390649	broad.mit.edu	36	15	100176822	100176822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001674	exon1	c.C910T	p.R304C	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24776053	24776053	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001165037	exon11	c.C1316G	p.T439S	.	.	.
RYR3	6263	broad.mit.edu	36	15	31646228	31646228	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon12	c.C1204T	p.R402C	.	.	.
SNX33	257364	broad.mit.edu	36	15	73729295	73729295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153271	exon1	c.G797A	p.R266H	.	.	.
N4BP1	9683	broad.mit.edu	36	16	47152886	47152886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153029	exon2	c.G1169A	p.R390K	.	.	.
CTCF	10664	broad.mit.edu	36	16	66218108	66218108	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001191022	exon6	c.G523T	p.A175S	.	.	.
GPR142	350383	broad.mit.edu	36	17	69879512	69879512	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181790	exon4	c.G567A	p.R189R	.	.	.
TP53	7157	broad.mit.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	A	A	rs28934574	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C844T	p.R282W	 TP53,central_nervous_system,brain,Substitution - Missense,-2 	.	.
CCDC40	55036	broad.mit.edu	36	17	75670032	75670032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017950	exon11	c.C1655T	p.A552V	.	.	.
C17orf68	80169	broad.mit.edu	36	17	8078588	8078588	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025099	exon10	c.G1728A	p.P576P	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40785269	40785269	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015559	exon4	c.G1966C	p.G656R	.	.	.
CRTC1	23373	broad.mit.edu	36	19	18717738	18717738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015321	exon3	c.C349T	p.R117W	.	.	.
ZNF493	284443	broad.mit.edu	36	19	21398403	21398403	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175910	exon2	c.A718T	p.K240X	.	.	.
KHSRP	8570	broad.mit.edu	36	19	6369853	6369853	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003685	exon8	c.C640T	p.R214W	.	.	.
GPR61	83873	broad.mit.edu	36	1	109887489	109887489	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031936	exon2	c.G322A	p.A108T	.	.	.
EXOSC10	5394	broad.mit.edu	36	1	11080668	11080668	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001998	exon2	c.C244T	p.Q82X	.	.	.
SETDB1	9869	broad.mit.edu	36	1	149190184	149190184	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145415	exon13	c.G2207A	p.R736Q	.	.	.
LMX1A	4009	broad.mit.edu	36	1	163441851	163441851	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177398	exon8	c.A862G	p.N288D	.	.	.
FMO1	2326	broad.mit.edu	36	1	169517784	169517784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002021	exon7	c.C871T	p.R291C	.	.	.
MUL1	79594	broad.mit.edu	36	1	20699844	20699844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024544	exon4	c.G985A	p.A329T	.	.	.
SYT14	255928	broad.mit.edu	36	1	208261178	208261178	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153262	exon4	c.C398T	p.S133L	.	.	.
EBNA1BP2	10969	broad.mit.edu	36	1	43410362	43410362	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006824	exon1	c.G15A	p.P5P	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74574314	74574314	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199327	exon9	c.A878C	p.D293A	.	.	.
DRAM2	128338	broad.mit.edu	36	1	111475616	111475616	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178454	exon3	c.84delT	p.I28fs	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2725982	2725982	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184699	exon6	c.C688A	p.P230T	.	.	.
ZHX3	23051	broad.mit.edu	36	20	39265779	39265779	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015035	exon3	c.A1192G	p.S398G	.	.	.
A4GALT	53947	broad.mit.edu	36	22	41419247	41419247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017436	exon3	c.G655A	p.A219T	.	.	.
APOB	338	broad.mit.edu	36	2	21086801	21086802	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000384	exon26	c.6444_6445insA	p.K2148fs	.	.	.
PLGLB2	5342	broad.mit.edu	36	2	87839650	87839651	+	Splice_Site	INS	-	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179348597	179348597	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon28	c.T6239A	p.I2080N	.	.	.
C2orf18	54978	broad.mit.edu	36	2	26851925	26851925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017877	exon4	c.C412T	p.R138W	.	.	.
FBXO11	80204	broad.mit.edu	36	2	47899672	47899672	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190274	exon15	c.C1847G	p.T616S	.	.	.
KLRAQ1	129285	broad.mit.edu	36	2	48567284	48567284	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135629	exon14	c.A1329G	p.K443K	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225447230	225447231	+	Frame_Shift_Del	DEL	TA	-	-	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	TA	TA	TA	-	TA	TA	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014689	exon10	c.1097_1098del	p.366_366del	.	.	.
C3orf26	84319	broad.mit.edu	36	3	101377884	101377884	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167924	exon9	c.A637C	p.K213Q	.	.	.
ACAD11	84129	broad.mit.edu	36	3	133844287	133844287	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032169	exon3	c.C299A	p.P100H	.	.	.
EIF4A2	1974	broad.mit.edu	36	3	187989684	187989684	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001967	exon11	c.C1156A	p.R386S	.	.	.
GPD1L	23171	broad.mit.edu	36	3	32144611	32144611	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015141	exon2	c.G87C	p.K29N	.	.	.
GPD1L	23171	broad.mit.edu	36	3	32175404	32175404	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015141	exon6	c.C651T	p.D217D	.	.	.
AADAC	13	broad.mit.edu	36	3	153028208	153028208	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001086	exon5	c.758delA	p.Y253fs	.	.	.
PHF17	79960	broad.mit.edu	36	4	130008517	130008517	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199320	exon10	c.C1560G	p.C520W	.	.	.
ENPP6	133121	broad.mit.edu	36	4	185275141	185275141	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153343	exon5	c.G717A	p.S239S	.	.	.
RGS12	6002	broad.mit.edu	36	4	3287800	3287800	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002926	exon2	c.G105A	p.T35T	.	.	.
APC	324	broad.mit.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon12	c.C1636T	p.R546X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
CEP120	153241	broad.mit.edu	36	5	122782074	122782074	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166226	exon2	c.T6G	p.L2L	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140549232	140549232	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019119	exon1	c.G2156A	p.R719Q	.	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140724773	140724773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032054	exon1	c.C692T	p.T231M	.	.	.
RAI14	26064	broad.mit.edu	36	5	34859642	34859642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145522	exon14	c.C1851T	p.S617S	.	.	.
HCN1	348980	broad.mit.edu	36	5	45339554	45339554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021072	exon6	c.G1522A	p.V508M	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79774784	79774784	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105251	exon6	c.C2506T	p.Q836X	.	.	.
APC	324	broad.mit.edu	36	5	112203389	112203389	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4145delC	p.S1382X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
HSPA1B	3304	broad.mit.edu	36	6	31903818	31903819	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005346	exon1	c.112_113insC	p.T38fs	.	.	.
DST	667	broad.mit.edu	36	6	56588986	56588986	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001723	exon24	c.A7238G	p.D2413G	.	.	.
C7orf50	84310	broad.mit.edu	36	7	1003836	1003837	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032350	exon5	c.536_537insC	p.L179fs	.	.	.
NUP205	23165	broad.mit.edu	36	7	134914116	134914116	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015135	exon7	c.C955G	p.L319V	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48420688	48420688	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152701	exon38	c.C11933A	p.T3978N	.	.	.
CDK14	5218	broad.mit.edu	36	7	90193817	90193817	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012395	exon2	c.A70T	p.I24L	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100184431	100184431	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152564	exon5	c.G487T	p.V163F	.	.	.
BLK	640	broad.mit.edu	36	8	11438244	11438244	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001715	exon2	c.C102T	p.D34D	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32622736	32622736	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153809	exon1	c.G2842A	p.A948T	.	.	.
NXF5	55998	broad.mit.edu	36	X	100979244	100979244	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032946	exon15	c.C958T	p.R320X	.	.	.
MUM1L1	139221	broad.mit.edu	36	X	105337231	105337231	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152423	exon5	c.C1150T	p.H384Y	.	.	.
ZCCHC12	170261	broad.mit.edu	36	X	117843543	117843543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173798	exon4	c.C308T	p.A103V	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1367701	1367701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172245	exon6	c.G393A	p.A131A	.	.	.
ZFX	7543	broad.mit.edu	36	X	24138523	24138523	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178086	exon6	c.G840A	p.V280V	.	.	.
WNK3	65267	broad.mit.edu	36	X	54299038	54299038	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002838	exon12	c.C2110G	p.Q704E	.	.	.
