Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SLC7A11	23657	hgsc.bcm.edu	36	4	139312566	139312567	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014331	exon12	c.1500_1501insA	p.K500fs	.	.	.
LRGUK	136332	hgsc.bcm.edu	36	7	133584312	133584312	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144648	exon18	c.T2142G	p.S714R	.	.	.
FAM180A	389558	hgsc.bcm.edu	36	7	135083817	135083817	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_205855	exon1	c.T52C	p.S18P	.	.	.
PRKD1	5587	hgsc.bcm.edu	36	14	29117238	29117238	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002742	exon17	c.G2514C	p.W838C	.	.	.
HHIPL1	84439	hgsc.bcm.edu	36	14	99204946	99204946	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032425	exon8	c.C1755T	p.P585P	.	.	.
ZBED4	9889	hgsc.bcm.edu	36	22	48664825	48664825	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014838	exon2	c.G1511T	p.R504L	.	.	.
PDCD2L	84306	hgsc.bcm.edu	36	19	39592208	39592208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032346	exon4	c.C639T	p.D213D	.	.	.
CTSB	1508	hgsc.bcm.edu	36	8	11740694	11740694	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_147781	exon10	c.C807G	p.H269Q	.	.	.
ELP3	55140	hgsc.bcm.edu	36	8	28103137	28103137	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018091	exon15	c.G1620A	p.P540P	.	.	.
RP1-21O18.1	23254	hgsc.bcm.edu	36	1	15264782	15264782	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_201628	exon8	c.C1168T	p.R390C	.	.	.
CD1A	909	hgsc.bcm.edu	36	1	156493384	156493384	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001763	exon4	c.C789T	p.R263R	.	.	.
PKP1	5317	hgsc.bcm.edu	36	1	199549255	199549255	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000299	exon3	c.C645A	p.I215I	.	.	.
KCNH1	3756	hgsc.bcm.edu	36	1	209015449	209015449	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002238	exon10	c.C1895A	p.A632D	.	.	.
CDCP2	200008	hgsc.bcm.edu	36	1	54382759	54382759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_201546	exon2	c.C395T	p.A132V	.	.	.
RPE65	6121	hgsc.bcm.edu	36	1	68677857	68677857	+	Nonsense_Mutation	SNP	G	G	A	rs61752895	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000329	exon7	c.C700T	p.R234X	.	.	.
OR10S1	219873	hgsc.bcm.edu	36	11	123353102	123353102	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004474	exon1	c.C507T	p.H169H	.	.	.
NELL1	4745	hgsc.bcm.edu	36	11	20825746	20825746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006157	exon4	c.G377A	p.R126Q	.	.	.
UBQLNL	143630	hgsc.bcm.edu	36	11	5493610	5493610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145053	exon1	c.G638A	p.R213H	.	.	.
EIF3F	8665	hgsc.bcm.edu	36	11	7969956	7969956	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003754	exon2	c.C417T	p.H139H	.	.	.
PC	5091	hgsc.bcm.edu	36	11	66373010	66373010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040716	exon23	c.G3473A	p.R1158H	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152828245	152828245	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033071	exon18	c.C1794T	p.T598T	.	.	.
FTSJD2	23070	hgsc.bcm.edu	36	6	37537310	37537310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015050	exon11	c.C1103T	p.S368L	.	.	.
HTR1E	3354	hgsc.bcm.edu	36	6	87782395	87782395	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000865	exon2	c.G624A	p.A208A	.	.	.
CPD	1362	hgsc.bcm.edu	36	17	25815744	25815744	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001199775	exon21	c.C3188T	p.S1063L	.	.	.
ASPA	443	hgsc.bcm.edu	36	17	3349057	3349057	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000049	exon6	c.C867T	p.Y289Y	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.
SRCAP	10847	hgsc.bcm.edu	36	16	30653335	30653335	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006662	exon31	c.G6627C	p.L2209L	.	.	.
CLUAP1	23059	hgsc.bcm.edu	36	16	3509976	3509976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024793	exon3	c.G154A	p.E52K	.	.	.
WWP2	11060	hgsc.bcm.edu	36	16	68463211	68463211	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199423	exon8	c.G579A	p.T193T	.	.	.
FAM65A	79567	hgsc.bcm.edu	36	16	66135815	66135815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001193522	exon15	c.C2725T	p.H909Y	.	.	.
HGD	3081	hgsc.bcm.edu	36	3	121840078	121840078	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000187	exon12	c.G920A	p.R307H	.	.	.
CNTN6	27255	hgsc.bcm.edu	36	3	1295107	1295107	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014461	exon5	c.C369G	p.D123E	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.
MCRS1	10445	hgsc.bcm.edu	36	12	48246482	48246482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001012300	exon1	c.G8A	p.R3H	.	.	.
GLDN	342035	hgsc.bcm.edu	36	15	49483906	49483906	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181789	exon10	c.C1319T	p.S440L	.	.	.
SNX22	79856	hgsc.bcm.edu	36	15	62233216	62233216	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024798	exon6	c.G422C	p.S141T	.	.	.
CLOCK	9575	hgsc.bcm.edu	36	4	56031724	56031724	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004898	exon8	c.G355A	p.D119N	.	.	.
WWC3	55841	hgsc.bcm.edu	36	X	10058062	10058062	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015691	exon18	c.A2499G	p.P833P	.	.	.
KIF4A	24137	hgsc.bcm.edu	36	X	69490208	69490208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012310	exon15	c.C1500T	p.T500T	.	.	.
ERBB4	2066	hgsc.bcm.edu	36	2	212238416	212238416	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005235	exon15	c.T1748A	p.F583Y	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237942441	237942441	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_057166	exon7	c.C2583T	p.I861I	.	.	.
APBA1	320	hgsc.bcm.edu	36	9	71320770	71320770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001163	exon2	c.G1177A	p.D393N	.	.	.
S1PR3	1903	hgsc.bcm.edu	36	9	90806581	90806581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005226	exon2	c.G646A	p.A216T	.	.	.
STARD13	90627	hgsc.bcm.edu	36	13	32601505	32601505	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178006	exon5	c.C1309T	p.Q437X	.	.	.
PCDH17	27253	hgsc.bcm.edu	36	13	57106019	57106019	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040429	exon1	c.C1338T	p.D446D	.	.	.
PTPRE	5791	hgsc.bcm.edu	36	10	129751348	129751348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_130435	exon7	c.G463A	p.E155K	.	.	.
THNSL1	79896	hgsc.bcm.edu	36	10	25353681	25353681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024838	exon3	c.C1523T	p.T508I	.	.	.
MYO3A	53904	hgsc.bcm.edu	36	10	26495014	26495014	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017433	exon27	c.C3012T	p.L1004L	.	.	.
MARCH8	220972	hgsc.bcm.edu	36	10	45348581	45348581	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001002266	exon2	c.A85G	p.K29E	.	.	.
MAN2A1	4124	hgsc.bcm.edu	36	5	109077211	109077211	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002372	exon2	c.T227A	p.V76D	.	.	.
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1636T	p.R546X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
PAIP2	51247	hgsc.bcm.edu	36	5	138727456	138727456	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033112	exon2	c.C84G	p.D28E	.	.	.
PCDHGC3	5098	hgsc.bcm.edu	36	5	140836010	140836010	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032402	exon1	c.G143C	p.G48A	.	.	.
STK10	6793	hgsc.bcm.edu	36	5	171477144	171477144	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005990	exon4	c.C466T	p.R156X	.	.	.
