Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB11	8647	genome.wustl.edu	37	2	169870851	169870851	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	169870851	169870851	T	A	SNP	ABCB11	NM_003742.2	human	genbank	58_37c	-1	reviewed	nonsense	c.112	p.K38*	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACO1	48	genome.wustl.edu	37	9	32431799	32431799	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	32431799	32431799	T	C	SNP	ACO1	NM_002197.2	human	genbank	58_37c	+1	reviewed	silent	c.1809	p.Y603	0.804	superfamily_Aconitase iron-sulfur domain	HMMPfam_Aconitase_C,HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain,superfamily_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2	-	no_errors
ADAMTS17	170691	genome.wustl.edu	37	15	100801723	100801723	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	15	100801723	100801723	T	C	SNP	ADAMTS17	NM_139057.2	human	genbank	58_37c	-1	reviewed	missense	c.992	p.D331G	0.999	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AGPAT3	56894	genome.wustl.edu	37	21	45400990	45400990	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	21	45400990	45400990	C	A	SNP	AGPAT3	NM_001037553.1	human	genbank	58_37c	+1	reviewed	missense	c.964	p.L322I	1.000	NULL	HMMPfam_Acyltransferase,HMMSmart_SM00563	-	no_errors
AIFM3	150209	genome.wustl.edu	37	22	21334332	21334332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	22	21334332	21334332	C	T	SNP	AIFM3	NM_144704.2	human	genbank	58_37c	+1	validated	missense	c.1676	p.A559V	1.000	superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,HMMPfam_Rieske,superfamily_ISP domain,superfamily_FAD/NAD(P)-binding domain	-	no_errors
AKAP8L	26993	genome.wustl.edu	37	19	15514361	15514361	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	15514361	15514361	T	A	SNP	AKAP8L	NM_014371.2	human	genbank	58_37c	-1	validated	missense	c.287	p.N96I	1.000	NULL	HMMPfam_AKAP95	-	no_errors
ARID1B	57492	genome.wustl.edu	37	6	157488246	157488246	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	157488246	157488246	C	G	SNP	ARID1B	NM_017519.2	human	genbank	58_37c	+1	validated	missense	c.2739	p.N913K	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
ASB6	140459	genome.wustl.edu	37	9	132404204	132404204	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	132404204	132404204	C	A	SNP	ASB6	ENST00000450050	human	ensembl	58_37c	-1	known	missense	c.20	p.W7L	1.000	NULL	HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
ATP1A4	480	genome.wustl.edu	37	1	160121911	160121911	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	160121911	160121911	G	C	SNP	ATP1A4	NM_144699.3	human	genbank	58_37c	+1	reviewed	missense	c.81	p.K27N	0.000	NULL	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
ATP4A	495	genome.wustl.edu	37	19	36054333	36054333	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	36054333	36054333	C	T	SNP	ATP4A	NM_000704.2	human	genbank	58_37c	-1	reviewed	missense	c.109	p.G37S	0.989	HMMPfam_H-K_ATPase_N	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,HMMPfam_H-K_ATPase_N,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
C17orf97	0	genome.wustl.edu	37	17	263747	263747	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	17	263747	263747	C	T	SNP	C17orf97	NM_001013672.4	human	genbank	58_37c	+1	validated	silent	c.1113	p.A371	0.000	NULL	NULL	-	no_errors
CAMK2A	815	genome.wustl.edu	37	5	149618306	149618306	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	5	149618306	149618306	G	T	SNP	CAMK2A	NM_015981.3	human	genbank	58_37c	-1	reviewed	silent	c.1023	p.S341	0.964	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_CaMKII_AD,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CDCA7L	55536	genome.wustl.edu	37	7	21942714	21942714	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	7	21942714	21942714	A	T	SNP	CDCA7L	NM_018719.4	human	genbank	58_37c	-1	validated	missense	c.1216	p.C406S	1.000	HMMPfam_zf-4CXXC_R1	HMMPfam_zf-4CXXC_R1	-	no_errors
CDH9	1007	genome.wustl.edu	37	5	26890538	26890538	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	5	26890538	26890538	T	C	SNP	CDH9	NM_016279.3	human	genbank	58_37c	-1	reviewed	missense	c.1389	p.I463M	0.992	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CEMP1	752014	genome.wustl.edu	37	16	2580811	2580811	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	16	2580811	2580811	A	C	SNP	CEMP1	NM_001048212.2	human	genbank	58_37c	-1	validated	silent	c.264	p.P88	0.000	NULL	NULL	-	no_errors
CFH	3075	genome.wustl.edu	37	1	196683022	196683022	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	196683022	196683022	A	T	SNP	CFH	NM_000186.3	human	genbank	58_37c	+1	reviewed	silent	c.1494	p.G498	0.955	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
COBLL1	22837	genome.wustl.edu	37	2	165551133	165551133	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	165551133	165551133	A	T	SNP	COBLL1	NM_014900.3	human	genbank	58_37c	-1	validated	silent	c.2883	p.P961	0.000	NULL	HMMPfam_Cobl	-	no_errors
COL5A2	1290	genome.wustl.edu	37	2	189943788	189943788	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	189943788	189943788	C	G	SNP	COL5A2	NM_000393.3	human	genbank	58_37c	-1	reviewed	splice_site	c.1005+1	e15+1	1.000	-	-	-	no_errors
CYP11B1	1584	genome.wustl.edu	37	8	143961043	143961043	+	Missense_Mutation	SNP	C	C	G	rs5282	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	8	143961043	143961043	C	G	SNP	CYP11B1	NM_000497.3	human	genbank	58_37c	-1	reviewed	missense	c.187	p.D63H	0.067	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DCST1	149095	genome.wustl.edu	37	1	155006974	155006974	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	155006974	155006974	C	T	SNP	DCST1	NM_152494.2	human	genbank	58_37c	+1	validated	missense	c.125	p.P42L	0.920	NULL	HMMPfam_DC_STAMP	-	no_errors
DNAJC28	54943	genome.wustl.edu	37	21	34860854	34860854	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	21	34860854	34860854	T	C	SNP	DNAJC28	NM_001040192.1	human	genbank	58_37c	-1	validated	missense	c.847	p.N283D	1.000	NULL	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,PatternScan_DNAJ_1,HMMPfam_DUF1992	-	no_errors
DYRK1B	9149	genome.wustl.edu	37	19	40319129	40319129	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	40319129	40319129	G	C	SNP	DYRK1B	NM_004714.1	human	genbank	58_37c	-1	reviewed	missense	c.615	p.H205Q	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ENSG00000226760	0	genome.wustl.edu	37	16	32489447	32489447	+	Missense_Mutation	SNP	G	G	A	rs13330343	byCluster;byFrequency;by2Hit2Allele	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	16	32489447	32489447	G	A	SNP	ENSG00000226760	ENST00000446918	human	ensembl	58_37c	-1	known	missense	c.127	p.H43Y	1.000	HMMPfam_ABC_tran,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon
FAM154A	158297	genome.wustl.edu	37	9	18950827	18950827	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	18950827	18950827	G	C	SNP	FAM154A	NM_153707.1	human	genbank	58_37c	-1	predicted	silent	c.147	p.P49	1.000	NULL	NULL	-	no_errors
FAM75A1	647060	genome.wustl.edu	37	9	39361273	39361273	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	39361273	39361273	T	C	SNP	FAM75A1	NM_001085452.1	human	genbank	58_37c	+1	predicted	missense	c.3511	p.F1171L	0.000	NULL	NULL	-	no_errors
FAM75A2	642265	genome.wustl.edu	37	9	39890524	39890524	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	39890524	39890524	T	C	SNP	FAM75A2	NM_001040065.1	human	genbank	58_37c	+1	predicted	missense	c.3511	p.F1171L	0.000	NULL	NULL	-	no_errors
FAM75C1	441452	genome.wustl.edu	37	9	90535856	90535856	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	90535856	90535856	C	A	SNP	FAM75C1	NM_001145124.1	human	genbank	58_37c	+1	validated	missense	c.1034	p.S345Y	0.001	NULL	NULL	-	no_errors
FAR1	84188	genome.wustl.edu	37	11	13721879	13721880	+	Frame_Shift_Ins	INS	-	-	AAATC	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	13721879	13721880	-	AAATC	INS	FAR1	NM_032228.5	human	genbank	58_37c	+1	validated	frame_shift_ins	c.205_206	p.R69fs	1.000:1.000	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd	HMMPfam_Sterile,HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd	-	no_errors
FAR1	84188	genome.wustl.edu	37	11	13721883	13721884	+	In_Frame_Ins	INS	-	-	TTT	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	13721883	13721884	-	TTT	INS	FAR1	NM_032228.5	human	genbank	58_37c	+1	validated	in_frame_ins	c.209_210	p.71in_frame_insF	1.000:1.000	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd	HMMPfam_Sterile,HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd	-	no_errors
GPRC6A	222545	genome.wustl.edu	37	6	117128090	117128090	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	117128090	117128090	G	T	SNP	GPRC6A	NM_148963.2	human	genbank	58_37c	-1	validated	silent	c.778	p.R260	0.988	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_Periplasmic binding protein-like I	-	no_errors
GTSE1	51512	genome.wustl.edu	37	22	46704300	46704300	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	22	46704300	46704300	G	-	DEL	GTSE1	NM_016426.6	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.222	p.V75fs	0.000	NULL	NULL	-	no_errors
HAUS5	23354	genome.wustl.edu	37	19	36103737	36103768	+	Frame_Shift_Del	DEL	CGGTCGAAGAGATGGGGGTGCCCGTGGCGGCC	CGGTCGAAGAGATGGGGGTGCCCGTGGCGGCC	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	CGGTCGAAGAGATGGGGGTGCCCGTGGCGGCC	CGGTCGAAGAGATGGGGGTGCCCGTGGCGGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	36103737	36103768	CGGTCGAAGAGATGGGGGTGCCCGTGGCGGCC	-	DEL	HAUS5	NM_015302.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.41_72	p.V15fs	0.907:0.301:0.213:0.158:0.036:0.937:0.972:0.972:0.999:1.000:1.000:1.000:1.000:0.998:0.940:0.526:0.480:0.394:0.247:0.252:0.470:0.474:0.333:0.044:0.001:0.000:0.001:0.003:0.001:0.760:0.867:0.893	NULL	NULL	-	no_errors
HERC2	8924	genome.wustl.edu	37	15	28360572	28360591	+	Splice_Site	DEL	TACCTCACTGAGGTCCGCGA	TACCTCACTGAGGTCCGCGA	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	TACCTCACTGAGGTCCGCGA	TACCTCACTGAGGTCCGCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	15	28360572	28360591	TACCTCACTGAGGTCCGCGA	-	DEL	HERC2	NM_004667.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.13725_13706	p.I4569fs	0.475:0.996:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.896:1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMSmart_SM00706,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_MIB_HERC2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
IARS2	55699	genome.wustl.edu	37	1	220316439	220316439	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	220316439	220316439	C	A	SNP	IARS2	NM_018060.3	human	genbank	58_37c	+1	validated	missense	c.2714	p.T905N	0.994	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_zf-FPG_IleRS,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase	-	no_errors
IL22RA2	116379	genome.wustl.edu	37	6	137466808	137466808	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	137466808	137466808	C	A	SNP	IL22RA2	NM_052962.2	human	genbank	58_37c	-1	reviewed	missense	c.745	p.D249Y	0.603	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind	-	no_errors
IL28RA	163702	genome.wustl.edu	37	1	24488039	24488039	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	1	24488039	24488039	C	-	DEL	IL28RA	NM_170743.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.503	p.G168fs	0.001	superfamily_Fibronectin type III	superfamily_Fibronectin type III	-	no_errors
ITGAX	3687	genome.wustl.edu	37	16	31382656	31382656	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	16	31382656	31382656	A	G	SNP	ITGAX	NM_000887.3	human	genbank	58_37c	+1	reviewed	missense	c.1843	p.T615A	0.982	HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,superfamily_SSF69318	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
ITGB8	3696	genome.wustl.edu	37	7	20431066	20431066	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	7	20431066	20431066	A	G	SNP	ITGB8	NM_002214.2	human	genbank	58_37c	+1	reviewed	missense	c.1001	p.D334G	1.000	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like	HMMPfam_Integrin_beta,HMMSmart_SM00187,HMMSmart_SM00423,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_vWA-like,superfamily_EGF/Laminin,superfamily_Integrin domains	-	no_errors
ITPR1	3708	genome.wustl.edu	37	3	4699915	4699915	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	4699915	4699915	C	T	SNP	ITPR1	NM_001099952.2	human	genbank	58_37c	+1	reviewed	silent	c.1104	p.F368	1.000	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
KCNK17	89822	genome.wustl.edu	37	6	39268235	39268235	+	Silent	SNP	C	C	T	rs142289538	by1000genomes	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	39268235	39268235	C	T	SNP	KCNK17	NM_001135111.1	human	genbank	58_37c	-1	reviewed	silent	c.753	p.S251	0.001	NULL	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	-	no_errors
LAMA2	3908	genome.wustl.edu	37	6	129468133	129468133	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	129468133	129468133	T	A	SNP	LAMA2	NM_000426.3	human	genbank	58_37c	+1	reviewed	silent	c.849	p.V283	0.637	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like	HMMPfam_Laminin_B,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF56399,superfamily_SSF57196	-	no_errors
LOC644768	644768	genome.wustl.edu	37	22	16954918	16954918	+	RNA	SNP	G	G	T	rs62153139	byCluster	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	22	16954918	16954918	G	T	SNP	LOC644768	XR_016834.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LPIN2	9663	genome.wustl.edu	37	18	2937724	2937724	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	18	2937724	2937724	C	G	SNP	LPIN2	NM_014646.2	human	genbank	58_37c	-1	reviewed	silent	c.1134	p.P378	0.741	NULL	HMMPfam_Lipin_N,HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784	-	no_errors
MPEG1	219972	genome.wustl.edu	37	11	58978653	58978653	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	58978653	58978653	G	A	SNP	MPEG1	NM_001039396.1	human	genbank	58_37c	-1	validated	silent	c.1686	p.S562	1.000	NULL	HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN	-	no_errors
NAV3	89795	genome.wustl.edu	37	12	78594278	78594278	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	12	78594278	78594278	C	A	SNP	NAV3	NM_014903.4	human	genbank	58_37c	+1	validated	silent	c.6675	p.P2225	0.247	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NWD1	284434	genome.wustl.edu	37	19	16870120	16870120	+	Silent	SNP	G	G	A	rs145131372	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	16870120	16870120	G	A	SNP	NWD1	NM_001007525.2	human	genbank	58_37c	+1	validated	silent	c.1449	p.P483	0.206	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR5H6	79295	genome.wustl.edu	37	3	97984086	97984086	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	97984086	97984086	A	G	SNP	OR5H6	NM_001005479.1	human	genbank	58_37c	+1	provisional	missense	c.958	p.M320V	0.126	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR6T1	219874	genome.wustl.edu	37	11	123814411	123814411	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	123814411	123814411	A	T	SNP	OR6T1	NM_001005187.1	human	genbank	58_37c	-1	provisional	silent	c.135	p.I45	0.035	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PHYH	5264	genome.wustl.edu	37	10	13325816	13325816	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	10	13325816	13325816	G	A	SNP	PHYH	NM_006214.3	human	genbank	58_37c	-1	reviewed	silent	c.702	p.H234	0.987	HMMPfam_PhyH	HMMPfam_PhyH	-	no_errors
PKHD1L1	93035	genome.wustl.edu	37	8	110503326	110503326	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	8	110503326	110503326	G	A	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	silent	c.10110	p.G3370	0.994	HMMSmart_SM00710,superfamily_Pectin lyase-like	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
PLA1A	51365	genome.wustl.edu	37	3	119336879	119336879	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	119336879	119336879	G	C	SNP	PLA1A	NM_015900.2	human	genbank	58_37c	+1	validated	silent	c.768	p.L256	1.000	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	PatternScan_LIPASE_SER,HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	-	no_errors
PLCB1	23236	genome.wustl.edu	37	20	8637898	8637898	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	20	8637898	8637898	C	A	SNP	PLCB1	NM_015192.2	human	genbank	58_37c	+1	reviewed	missense	c.662	p.P221H	1.000	superfamily_EF-hand	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PLC-beta_C,HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
POLN	353497	genome.wustl.edu	37	4	2087377	2087377	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	4	2087377	2087377	G	C	SNP	POLN	NM_181808.2	human	genbank	58_37c	-1	validated	missense	c.2160	p.D720E	1.000	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases	-	no_errors
PTGS1	5742	genome.wustl.edu	37	9	125148912	125148912	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	125148912	125148912	G	C	SNP	PTGS1	NM_000962.2	human	genbank	58_37c	+1	reviewed	missense	c.1197	p.Q399H	0.043	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_An_peroxidase,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,superfamily_EGF/Laminin	-	no_errors
RBM28	55131	genome.wustl.edu	37	7	127983761	127983761	+	Silent	SNP	C	C	T	rs144136436	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	7	127983761	127983761	C	T	SNP	RBM28	NM_018077.2	human	genbank	58_37c	-1	reviewed	silent	c.87	p.P29	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
SLC22A10	387775	genome.wustl.edu	37	11	63057707	63057730	+	In_Frame_Del	DEL	ATTCTTCCCTCTCTCATGTTATTA	ATTCTTCCCTCTCTCATGTTATTA	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	ATTCTTCCCTCTCTCATGTTATTA	ATTCTTCCCTCTCTCATGTTATTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	11	63057707	63057730	ATTCTTCCCTCTCTCATGTTATTA	-	DEL	SLC22A10	NM_001039752.3	human	genbank	58_37c	+1	validated	in_frame_del	c.70_93	p.LPSLMLLI25in_frame_del	0.000:0.001:0.001:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.004:0.000:0.000:0.003:0.000:0.000:0.000:0.000	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC4A10	57282	genome.wustl.edu	37	2	162804110	162804110	+	Missense_Mutation	SNP	G	G	C	rs148092998	by1000genomes	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	162804110	162804110	G	C	SNP	SLC4A10	NM_022058.3	human	genbank	58_37c	+1	reviewed	missense	c.2048	p.R683P	1.000	HMMPfam_HCO3_cotransp	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein,PatternScan_HTH_ARAC_FAMILY_1	-	no_errors
SLC4A2	6522	genome.wustl.edu	37	7	150767276	150767276	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	7	150767276	150767276	G	C	SNP	SLC4A2	NM_003040.3	human	genbank	58_37c	+1	validated	missense	c.1292	p.S431T	1.000	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors
SMC5	23137	genome.wustl.edu	37	9	72959102	72959102	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	9	72959102	72959102	C	G	SNP	SMC5	NM_015110.3	human	genbank	58_37c	+1	validated	missense	c.2440	p.Q814E	0.995	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540	-	no_errors
SNORD100	0	genome.wustl.edu	37	6	133137948	133137950	+	RNA	DEL	ATG	ATG	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	133137948	133137950	ATG	-	DEL	SNORD100	NR_002435.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.999:1.000:1.000	-	-	-	no_errors
SORCS1	114815	genome.wustl.edu	37	10	108367018	108367018	+	Missense_Mutation	SNP	A	A	T	rs147930213	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	10	108367018	108367018	A	T	SNP	SORCS1	NM_001013031.1	human	genbank	58_37c	-1	reviewed	missense	c.3071	p.V1024E	0.998	NULL	HMMPfam_PKD,HMMSmart_PKD,superfamily_PKD,HMMSmart_VPS10,superfamily_SSF110296	-	no_errors
SPANXN4	441525	genome.wustl.edu	37	X	142121829	142121829	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	X	142121829	142121829	A	G	SNP	SPANXN4	NM_001009613.2	human	genbank	58_37c	+1	reviewed	missense	c.97	p.R33G	0.000	NULL	NULL	-	no_errors
TGM3	7053	genome.wustl.edu	37	20	2298032	2298032	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	20	2298032	2298032	C	A	SNP	TGM3	NM_003245.3	human	genbank	58_37c	+1	reviewed	missense	c.884	p.T295N	1.000	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases	-	no_errors
TIMM8A	1678	genome.wustl.edu	37	X	100603538	100603567	+	In_Frame_Del	DEL	TCTGGTGCACCAGCTGCTGGAAGCGCTGCT	TCTGGTGCACCAGCTGCTGGAAGCGCTGCT	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	TCTGGTGCACCAGCTGCTGGAAGCGCTGCT	TCTGGTGCACCAGCTGCTGGAAGCGCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	X	100603538	100603567	TCTGGTGCACCAGCTGCTGGAAGCGCTGCT	-	DEL	TIMM8A	NM_004085.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.115_86	p.KQRFQQLVHQ29in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.975:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_zf-Tim10_DDP	HMMPfam_zf-Tim10_DDP	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	byCluster	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	17	7578406	7578406	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.524	p.R175H	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UPB1	51733	genome.wustl.edu	37	22	24916420	24916441	+	Frame_Shift_Del	DEL	TCAATCGAGTGGGCACCGTAAG	TCAATCGAGTGGGCACCGTAAG	-	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	TCAATCGAGTGGGCACCGTAAG	TCAATCGAGTGGGCACCGTAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	22	24916420	24916441	TCAATCGAGTGGGCACCGTAAG	-	DEL	UPB1	NM_016327.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.857_873	p.I286fs	1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.019:1.000:1.000:0.977:1.000:1.000:0.314:0.324:0.777:0.985	superfamily_Carbon-nitrogen hydrolase	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase	-	no_errors
WASF1	8936	genome.wustl.edu	37	6	110422929	110422929	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	110422929	110422929	C	T	SNP	WASF1	NM_001024934.1	human	genbank	58_37c	-1	reviewed	missense	c.1384	p.A462T	1.000	NULL	HMMPfam_WH2,HMMSmart_SM00246	-	no_errors
WDR35	57539	genome.wustl.edu	37	2	20131080	20131080	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	2	20131080	20131080	C	A	SNP	WDR35	NM_001006657.1	human	genbank	58_37c	-1	reviewed	nonsense	c.2947	p.E983*	0.987	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
WIZ	58525	genome.wustl.edu	37	19	15547847	15547847	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	19	15547847	15547847	C	T	SNP	WIZ	NM_021241.2	human	genbank	58_37c	-1	validated	missense	c.299	p.R100Q	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZBTB9	221504	genome.wustl.edu	37	6	33423207	33423207	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	6	33423207	33423207	G	A	SNP	ZBTB9	NM_152735.3	human	genbank	58_37c	+1	validated	silent	c.330	p.L110	0.981	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFP161	7541	genome.wustl.edu	37	18	5291511	5291511	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	18	5291511	5291511	C	T	SNP	ZFP161	NM_001143823.1	human	genbank	58_37c	-1	validated	silent	c.696	p.G232	0.997	NULL	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZPLD1	131368	genome.wustl.edu	37	3	102183084	102183084	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J2-01A-11W-A050-09	TCGA-AO-A0J2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84b66e02-1b37-4424-b752-363f7861fe74	e3d65145-2dc6-4be3-a3b9-b53940c920fe	3	102183084	102183084	T	A	SNP	ZPLD1	NM_175056.1	human	genbank	58_37c	+1	provisional	missense	c.798	p.D266E	0.958	HMMPfam_Zona_pellucida,HMMSmart_ZP	HMMPfam_Zona_pellucida,HMMSmart_ZP	-	no_errors
