Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
C1orf26	54823	genome.wustl.edu	37	1	185153956	185153956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	1	185153956	185153956	G	A	SNP	C1orf26	NM_001105518.1	human	genbank	58_37c	+1	validated	missense	c.1322	p.R441H	0.873	HMMSmart_PINc,superfamily_SSF88723	HMMSmart_PINc,superfamily_SSF88723	-	no_errors
C3orf18	51161	genome.wustl.edu	37	3	50598482	50598482	+	Missense_Mutation	SNP	G	G	A	rs143163338	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	3	50598482	50598482	G	A	SNP	C3orf18	NM_016210.3	human	genbank	58_37c	-1	validated	missense	c.274	p.R92C	0.996	NULL	NULL	-	no_errors
C6orf103	79747	genome.wustl.edu	37	6	147073842	147073842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	6	147073842	147073842	G	A	SNP	C6orf103	NM_024694.3	human	genbank	58_37c	+1	provisional	missense	c.3542	p.S1181N	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00230,superfamily_Cysteine proteinases	-	no_errors
CACNA1E	777	genome.wustl.edu	37	1	181701998	181701998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	1	181701998	181701998	G	A	SNP	CACNA1E	NM_000721.2	human	genbank	58_37c	+1	reviewed	missense	c.2776	p.V926I	0.683	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CAPRIN1	4076	genome.wustl.edu	37	11	34113522	34113522	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	11	34113522	34113522	C	G	SNP	CAPRIN1	NM_005898.4	human	genbank	58_37c	+1	validated	missense	c.1624	p.Q542E	1.000	NULL	NULL	-	no_errors
CSPG4	1464	genome.wustl.edu	37	15	75982041	75982041	+	Silent	SNP	C	C	T	rs79474855	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	15	75982041	75982041	C	T	SNP	CSPG4	NM_001897.4	human	genbank	58_37c	-1	reviewed	silent	c.1365	p.T455	0.001	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
DCAF12L2	340578	genome.wustl.edu	37	X	125299410	125299410	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	X	125299410	125299410	G	A	SNP	DCAF12L2	NM_001013628.2	human	genbank	58_37c	-1	reviewed	silent	c.498	p.T166	0.039	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DIP2B	57609	genome.wustl.edu	37	12	51133229	51133229	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	12	51133229	51133229	A	C	SNP	DIP2B	NM_173602.2	human	genbank	58_37c	+1	validated	missense	c.4214	p.Y1405S	1.000	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
DNAH11	8701	genome.wustl.edu	37	7	21639512	21639512	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	7	21639512	21639512	C	T	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	silent	c.2775	p.H925	0.995	NULL	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DPPA3	359787	genome.wustl.edu	37	12	7867799	7867799	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	12	7867799	7867799	G	A	SNP	DPPA3	NM_199286.2	human	genbank	58_37c	+1	reviewed	missense	c.103	p.E35K	0.028	NULL	NULL	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950783	16950783	+	RNA	SNP	T	T	A	rs2246249	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	1	16950783	16950783	T	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.983	-	-	-	no_errors
ERC1	23085	genome.wustl.edu	37	12	1289751	1289751	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	12	1289751	1289751	A	T	SNP	ERC1	NM_178040.2	human	genbank	58_37c	+1	reviewed	missense	c.1783	p.S595C	1.000	superfamily_Prefoldin,HMMPfam_Cast	superfamily_Prefoldin,HMMPfam_RBD-FIP,HMMPfam_Cast	-	no_errors
KDM4D	55693	genome.wustl.edu	37	11	94730906	94730906	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	11	94730906	94730906	A	T	SNP	KDM4D	NM_018039.2	human	genbank	58_37c	+1	validated	nonsense	c.370	p.K124*	0.770	NULL	HMMSmart_JmjC,HMMPfam_JmjN,HMMPfam_JmjC	-	no_errors
MINK1	50488	genome.wustl.edu	37	17	4788835	4788835	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	17	4788835	4788835	T	A	SNP	MINK1	NM_153827.4	human	genbank	58_37c	+1	reviewed	missense	c.566	p.I189N	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NF1	4763	genome.wustl.edu	37	17	29562668	29562668	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	17	29562668	29562668	C	T	SNP	NF1	NM_001042492.2	human	genbank	58_37c	+1	reviewed	missense	c.3748	p.R1250W	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
PHLPP2	23035	genome.wustl.edu	37	16	71701217	71701217	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	16	71701217	71701217	G	A	SNP	PHLPP2	NM_015020.2	human	genbank	58_37c	-1	validated	missense	c.1648	p.L550F	1.000	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00369,HMMPfam_PP2C,HMMSmart_SM00364,superfamily_PH domain-like,superfamily_L domain-like	-	no_errors
RBM12	10137	genome.wustl.edu	37	20	34240797	34240817	+	In_Frame_Del	DEL	AGGGGCACTTCCAAGACCAGG	AGGGGCACTTCCAAGACCAGG	-	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	AGGGGCACTTCCAAGACCAGG	AGGGGCACTTCCAAGACCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	20	34240797	34240817	AGGGGCACTTCCAAGACCAGG	-	DEL	RBM12	NM_006047.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.2448_2428	p.PGLGSAP810in_frame_del	0.779:0.766:0.312:0.067:0.071:0.067:0.063:0.045:0.094:0.448:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RYR3	6263	genome.wustl.edu	37	15	34078003	34078003	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	15	34078003	34078003	A	G	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.9409	p.M3137V	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SALL1	6299	genome.wustl.edu	37	16	51175176	51175176	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	16	51175176	51175176	G	A	SNP	SALL1	NM_002968.2	human	genbank	58_37c	-1	reviewed	silent	c.957	p.I319	0.681	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SLFN5	162394	genome.wustl.edu	37	17	33592829	33592829	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	17	33592829	33592829	G	A	SNP	SLFN5	NM_144975.3	human	genbank	58_37c	+1	validated	silent	c.2598	p.P866	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SRRD	402055	genome.wustl.edu	37	22	26884108	26884108	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	22	26884108	26884108	G	A	SNP	SRRD	NM_001013694.2	human	genbank	58_37c	+1	validated	missense	c.364	p.V122M	0.000	NULL	HMMPfam_SRR1	-	no_errors
USP9X	8239	genome.wustl.edu	37	X	41084197	41084198	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	X	41084197	41084198	-	A	INS	USP9X	NM_001039590.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.6954_6955	p.S2318fs	1.000:1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
WBP2	23558	genome.wustl.edu	37	17	73843629	73843629	+	Silent	SNP	C	C	T	rs35071314	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	17	73843629	73843629	C	T	SNP	WBP2	NM_012478.3	human	genbank	58_37c	-1	reviewed	silent	c.594	p.P198	0.981	HMMPfam_WWbp	HMMPfam_GRAM,HMMPfam_WWbp	-	no_errors
WDR26	80232	genome.wustl.edu	37	1	224607232	224607232	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a535c49-d42e-43c6-9d32-dc76f28d4f0f	ef348ec7-f3d5-41d6-af09-65f81ebd2b46	1	224607232	224607232	C	A	SNP	WDR26	NM_025160.6	human	genbank	58_37c	-1	reviewed	missense	c.409	p.D137Y	1.000	NULL	HMMSmart_SM00320,HMMSmart_SM00668,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
