Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB1	0	genome.wustl.edu	37	7	87168661	87168661	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	87168661	87168661	C	T	SNP	ABCB1	NM_000927.3	human	genbank	58_37c	-1	reviewed	missense	c.2320	p.G774S	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCB7	0	genome.wustl.edu	37	X	74289263	74289263	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	74289263	74289263	C	A	SNP	ABCB7	NM_004299.3	human	genbank	58_37c	-1	reviewed	missense	c.1395	p.Q465H	1.000	superfamily_ABC_TM_1	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ACTL6B	0	genome.wustl.edu	37	7	100245120	100245120	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	100245120	100245120	T	A	SNP	ACTL6B	NM_016188.4	human	genbank	58_37c	-1	reviewed	nonsense	c.706	p.K236*	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_2,superfamily_SSF53067	-	no_errors
ADAMTS17	0	genome.wustl.edu	37	15	100636566	100636566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	100636566	100636566	C	T	SNP	ADAMTS17	NM_139057.2	human	genbank	58_37c	-1	reviewed	missense	c.2132	p.G711E	1.000	HMMPfam_ADAM_spacer1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKAP6	0	genome.wustl.edu	37	14	33147618	33147618	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	33147618	33147618	G	C	SNP	AKAP6	NM_004274.4	human	genbank	58_37c	+1	reviewed	missense	c.2832	p.K944N	0.984	NULL	PatternScan_PFKB_KINASES_2,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
AKNAD1	0	genome.wustl.edu	37	1	109395170	109395170	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	109395170	109395170	A	T	SNP	AKNAD1	NM_152763.3	human	genbank	58_37c	-1	validated	missense	c.117	p.D39E	0.000	NULL	NULL	-	no_errors
AMN	0	genome.wustl.edu	37	14	103395190	103395190	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	103395190	103395190	G	A	SNP	AMN	NM_030943.3	human	genbank	58_37c	+1	reviewed	missense	c.391	p.D131N	1.000	NULL	NULL	-	no_errors
ANGPTL1	0	genome.wustl.edu	37	1	178834198	178834198	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	178834198	178834198	C	A	SNP	ANGPTL1	NM_004673.3	human	genbank	58_37c	-1	reviewed	missense	c.714	p.E238D	1.000	NULL	HMMPfam_Fibrinogen_C,HMMSmart_FBG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C	-	no_errors
ANO4	0	genome.wustl.edu	37	12	101430911	101430911	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	101430911	101430911	G	T	SNP	ANO4	NM_178826.3	human	genbank	58_37c	+1	validated	missense	c.775	p.A259S	1.000	NULL	HMMPfam_DUF590	-	no_errors
APOB	0	genome.wustl.edu	37	2	21251331	21251332	+	Missense_Mutation	DNP	AT	AT	GG	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	21251331	21251332	AT	GG	DNP	APOB	NM_000384.2	human	genbank	58_37c	-1	reviewed	missense	c.1697_1696	p.M566P	1.000:1.000	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain	-	no_errors
ARFGAP2	0	genome.wustl.edu	37	11	47198382	47198382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	47198382	47198382	G	A	SNP	ARFGAP2	NM_032389.3	human	genbank	58_37c	-1	provisional	missense	c.23	p.T8I	0.997	NULL	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP	-	no_errors
ASMTL	0	genome.wustl.edu	37	X	1558027	1558027	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	1558027	1558027	C	T	SNP	ASMTL	NM_004192.3	human	genbank	58_37c	-1	reviewed	missense	c.236	p.R79Q	0.974	HMMPfam_Maf,superfamily_Maf/Ham1	"HMMPfam_Methyltransf_2,HMMPfam_Maf,superfamily_""Winged helix"" DNA-binding domain,superfamily_Maf/Ham1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
BAT5	0	genome.wustl.edu	37	6	31660923	31660923	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	31660923	31660923	C	G	SNP	BAT5	NM_021160.2	human	genbank	58_37c	-1	reviewed	missense	c.507	p.K169N	1.000	NULL	HMMPfam_Abhydrolase_1,superfamily_SSF53474	-	no_errors
BIRC6	0	genome.wustl.edu	37	2	32656007	32656007	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	32656007	32656007	A	G	SNP	BIRC6	NM_016252.3	human	genbank	58_37c	+1	reviewed	missense	c.3097	p.T1033A	1.000	NULL	HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat	-	no_errors
C14orf119	0	genome.wustl.edu	37	14	23566911	23566911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	23566911	23566911	C	A	SNP	C14orf119	NM_017924.2	human	genbank	58_37c	+1	predicted	missense	c.44	p.S15Y	0.100	NULL	NULL	-	no_errors
C20orf117	0	genome.wustl.edu	37	20	35415036	35415036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	20	35415036	35415036	G	A	SNP	C20orf117	ENST00000237536	human	ensembl	58_37c	-1	known	missense	c.4838	p.A1613V	0.121	NULL	NULL	-	no_errors
C4BPA	0	genome.wustl.edu	37	1	207287417	207287451	+	Frame_Shift_Del	DEL	TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG	TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG	TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	207287417	207287451	TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG	-	DEL	C4BPA	NM_000715.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.171_149	p.G65fs	0.001:0.013:0.001:0.000:0.000:0.005:0.136:0.164:0.216:0.434:0.878:0.944:0.966:0.958:0.937:0.937:0.932:0.921:0.617:0.568:0.559:0.877:0.898:0.968:0.984:0.996:1.000:1.000:0.980:0.000:0.000:0.000:0.000:0.957:0.996	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
C5orf42	0	genome.wustl.edu	37	5	37182935	37182936	+	In_Frame_Ins	INS	-	-	TCTTTA	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	37182935	37182936	-	TCTTTA	INS	C5orf42	NM_023073.3	human	genbank	58_37c	-1	predicted	in_frame_ins	c.1991_1990	p.A664in_frame_insVKT	1.000:1.000	NULL	NULL	-	no_errors
C5orf45	0	genome.wustl.edu	37	5	179280249	179280249	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	179280249	179280249	G	C	SNP	C5orf45	ENST00000403396	human	ensembl	58_37c	-1	known	missense	c.200	p.S67C	0.001	NULL	NULL	-	no_errors
C6orf138	0	genome.wustl.edu	37	6	47846834	47846835	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	47846834	47846835	-	T	INS	C6orf138	NM_001013732.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1695_1694	p.P566fs	1.000:1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
C6orf70	0	genome.wustl.edu	37	6	170176590	170176590	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	170176590	170176590	T	A	SNP	C6orf70	NM_018341.1	human	genbank	58_37c	+1	validated	silent	c.1560	p.V520	0.000	NULL	NULL	-	no_errors
C8orf45	0	genome.wustl.edu	37	8	67793181	67793181	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	67793181	67793181	A	G	SNP	C8orf45	NM_173518.4	human	genbank	58_37c	+1	validated	silent	c.807	p.A269	1.000	HMMSmart_SM00350	HMMPfam_MCM,HMMSmart_SM00350	-	no_errors
CACNA1C	0	genome.wustl.edu	37	12	2711019	2711019	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	2711019	2711019	G	T	SNP	CACNA1C	NM_199460.2	human	genbank	58_37c	+1	reviewed	splice_site	c.2914-1	e23-1	1.000	-	-	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68863622	68863635	+	Frame_Shift_Del	DEL	TGCACCAACCCTCA	TGCACCAACCCTCA	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	TGCACCAACCCTCA	TGCACCAACCCTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	68863622	68863635	TGCACCAACCCTCA	-	DEL	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2361_2374	p.A788fs	0.940:0.987:0.981:0.006:1.000:1.000:0.957:0.965:0.956:0.493:0.513:0.503:0.309:0.063	HMMPfam_Cadherin_C	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CDK19	0	genome.wustl.edu	37	6	110942346	110942346	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	110942346	110942346	G	C	SNP	CDK19	NM_015076.3	human	genbank	58_37c	-1	reviewed	silent	c.1338	p.G446	0.111	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CDKL5	0	genome.wustl.edu	37	X	18664154	18664154	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	18664154	18664154	G	C	SNP	CDKL5	NM_001037343.1	human	genbank	58_37c	+1	reviewed	missense	c.2741	p.R914T	0.005	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CHD7	0	genome.wustl.edu	37	8	61773585	61773585	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	61773585	61773585	G	C	SNP	CHD7	NM_017780.2	human	genbank	58_37c	+1	reviewed	silent	c.7731	p.G2577	1.000	HMMPfam_BRK,HMMSmart_SM00592	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CHI3L1	0	genome.wustl.edu	37	1	203154430	203154430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	203154430	203154430	C	T	SNP	CHI3L1	NM_001276.2	human	genbank	58_37c	-1	reviewed	missense	c.139	p.D47N	1.000	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat,superfamily_SSF54556	-	no_errors
CHN2	0	genome.wustl.edu	37	7	29433303	29433303	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	29433303	29433303	C	G	SNP	CHN2	NM_004067.2	human	genbank	58_37c	+1	reviewed	missense	c.153	p.N51K	1.000	superfamily_SH2 domain	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_GTPase activation domain GAP,superfamily_SH2 domain,superfamily_Cysteine-rich domain	-	no_errors
CLEC3A	0	genome.wustl.edu	37	16	78064682	78064682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	78064682	78064682	G	A	SNP	CLEC3A	NM_005752.3	human	genbank	58_37c	+1	validated	missense	c.538	p.D180N	0.996	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CNOT2	0	genome.wustl.edu	37	12	70726585	70726585	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	70726585	70726585	G	A	SNP	CNOT2	NM_014515.4	human	genbank	58_37c	+1	provisional	missense	c.608	p.G203E	1.000	NULL	HMMPfam_NOT2_3_5	-	no_errors
CR2	0	genome.wustl.edu	37	1	207648368	207648368	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	207648368	207648368	T	A	SNP	CR2	NM_001006658.2	human	genbank	58_37c	+1	reviewed	silent	c.2523	p.S841	0.000	NULL	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
CSGALNACT2	0	genome.wustl.edu	37	10	43650986	43650986	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	43650986	43650986	A	G	SNP	CSGALNACT2	NM_018590.3	human	genbank	58_37c	+1	provisional	missense	c.389	p.K130R	1.000	HMMPfam_CHGN	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
CXorf21	0	genome.wustl.edu	37	X	30578016	30578016	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	30578016	30578016	C	T	SNP	CXorf21	NM_025159.2	human	genbank	58_37c	-1	validated	missense	c.457	p.G153S	1.000	NULL	PatternScan_ADH_SHORT	-	no_errors
DCP1A	0	genome.wustl.edu	37	3	53326366	53326366	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	53326366	53326366	C	A	SNP	DCP1A	NM_018403.5	human	genbank	58_37c	-1	reviewed	missense	c.1116	p.Q372H	0.938	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors
DDX59	0	genome.wustl.edu	37	1	200613627	200613627	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	200613627	200613627	A	G	SNP	DDX59	ENST00000429498	human	ensembl	58_37c	-1	known	missense	c.347	p.I116T	0.751	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DGUOK	0	genome.wustl.edu	37	2	74177737	74177737	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	74177737	74177737	G	C	SNP	DGUOK	NM_080916.1	human	genbank	58_37c	+1	reviewed	missense	c.469	p.E157Q	1.000	HMMPfam_dNK,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_dNK,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DHCR7	0	genome.wustl.edu	37	11	71155930	71155930	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	71155930	71155930	G	C	SNP	DHCR7	NM_001360.2	human	genbank	58_37c	-1	reviewed	silent	c.69	p.T23	0.000	NULL	HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2	-	no_errors
DIABLO	0	genome.wustl.edu	37	12	122710562	122710562	+	RNA	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	122710562	122710562	T	A	SNP	DIABLO	NR_024600.1	human	genbank	58_37c	-1	reviewed	rna	NULL	NULL	0.379	-	-	-	no_errors
DIAPH2	0	genome.wustl.edu	37	X	96603145	96603145	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	96603145	96603145	G	C	SNP	DIAPH2	NM_006729.4	human	genbank	58_37c	+1	reviewed	missense	c.2875	p.E959Q	1.000	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	HMMSmart_SM00498,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DKC1	0	genome.wustl.edu	37	X	153993196	153993196	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	153993196	153993196	T	G	SNP	DKC1	NM_001363.3	human	genbank	58_37c	+1	reviewed	missense	c.39	p.H13Q	1.000	NULL	HMMPfam_PUA,HMMSmart_PUA,HMMPfam_TruB_N,HMMPfam_DKCLD,superfamily_PUA-like,superfamily_PsdUridine_synth_cat_dom	-	no_errors
DYNC1H1	0	genome.wustl.edu	37	14	102478724	102478724	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	102478724	102478724	T	G	SNP	DYNC1H1	NM_001376.4	human	genbank	58_37c	+1	reviewed	missense	c.6931	p.W2311G	1.000	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540	-	no_errors
DYNLRB2	0	genome.wustl.edu	37	16	80577175	80577175	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	80577175	80577175	A	C	SNP	DYNLRB2	NM_130897.1	human	genbank	58_37c	+1	provisional	silent	c.6	p.A2	1.000	NULL	HMMPfam_Robl_LC7	-	no_errors
EGFR	0	genome.wustl.edu	37	7	55219021	55219021	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	55219021	55219021	C	T	SNP	EGFR	NM_005228.3	human	genbank	58_37c	+1	reviewed	silent	c.594	p.S198	1.000	HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_L domain-like	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_L domain-like	-	no_errors
EHD4	0	genome.wustl.edu	37	15	42235331	42235331	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	42235331	42235331	G	A	SNP	EHD4	NM_139265.3	human	genbank	58_37c	-1	validated	silent	c.445	p.L149	1.000	HMMPfam_Dynamin_N,superfamily_SSF52540	HMMSmart_EH,HMMPfam_Dynamin_N,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF52540	-	no_errors
ELFN1	0	genome.wustl.edu	37	7	1784270	1784294	+	Frame_Shift_Del	DEL	TGGCGGCCGCCACCCTGCTGCACGC	TGGCGGCCGCCACCCTGCTGCACGC	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	TGGCGGCCGCCACCCTGCTGCACGC	TGGCGGCCGCCACCCTGCTGCACGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	1784270	1784294	TGGCGGCCGCCACCCTGCTGCACGC	-	DEL	ELFN1	NM_001128636.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.38_62	p.A16fs	1.000:1.000:1.000:0.995:0.036:0.244:0.241:0.032:0.033:0.031:0.000:0.028:0.829:0.849:0.932:1.000:1.000:1.000:1.000:1.000:0.998:0.998:0.945:0.925:0.904	NULL	HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
ENSG00000173366	0	genome.wustl.edu	37	3	52255599	52255599	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	52255599	52255599	G	C	SNP	ENSG00000173366	ENST00000494383	human	ensembl	58_37c	-1	known	missense	c.3193	p.R1065G	0.027	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRR_1,HMMSmart_SM00102,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like,superfamily_Actin depolymerizing proteins	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000198804	0	genome.wustl.edu	37	MT	6635	6635	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	MT	6635	6635	T	C	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	silent	c.732	p.Y244	NULL	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000215407	0	genome.wustl.edu	37	15	20450241	20450241	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	20450241	20450241	C	A	SNP	ENSG00000215407	ENST00000400226	human	ensembl	58_37c	-1	known	missense	c.1081	p.A361S	0.005	HMMPfam_BRO1	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_BRO1	-	no_errors
ENSG00000223521	0	genome.wustl.edu	37	15	102314066	102314066	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	102314066	102314066	C	G	SNP	ENSG00000223521	ENST00000448387	human	ensembl	58_37c	-1	known	missense	c.158	p.C53S	0.992	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000226511	0	genome.wustl.edu	37	16	33752878	33752878	+	Missense_Mutation	SNP	C	C	A	rs684999	byFrequency	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	33752878	33752878	C	A	SNP	ENSG00000226511	ENST00000450856	human	ensembl	58_37c	-1	known	missense	c.10	p.G4W	0.105	NULL	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
ENSG00000231520	0	genome.wustl.edu	37	10	42380135	42380135	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	42380135	42380135	A	G	SNP	ENSG00000231520	ENST00000429113	human	ensembl	58_37c	-1	known	missense	c.115	p.W39R	0.000	NULL	NULL	-	no_stop_codon
ENSG00000232657	0	genome.wustl.edu	37	4	49110284	49110284	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	49110284	49110284	C	T	SNP	ENSG00000232657	ENST00000417378	human	ensembl	58_37c	-1	known	missense	c.115	p.G39R	0.000	NULL	NULL	-	no_stop_codon
EPB41	0	genome.wustl.edu	37	1	29314146	29314146	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	29314146	29314146	T	A	SNP	EPB41	NM_203343.2	human	genbank	58_37c	+1	reviewed	nonsense	c.197	p.L66*	1.000	NULL	HMMPfam_SAB,HMMPfam_4_1_CTD,HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
FAM117A	0	genome.wustl.edu	37	17	47788904	47788909	+	In_Frame_Del	DEL	CAGGAC	CAGGAC	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	CAGGAC	CAGGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	47788904	47788909	CAGGAC	-	DEL	FAM117A	NM_030802.3	human	genbank	58_37c	-1	validated	in_frame_del	c.1075_1070	p.GP357in_frame_del	1.000:1.000:1.000:1.000:0.999:0.998	NULL	NULL	-	no_errors
FAM22F	0	genome.wustl.edu	37	9	97082784	97082784	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	97082784	97082784	C	G	SNP	FAM22F	ENST00000434357	human	ensembl	58_37c	-1	known	missense	c.772	p.A258P	0.714	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FER1L6	0	genome.wustl.edu	37	8	125074185	125074185	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	125074185	125074185	C	T	SNP	FER1L6	NM_001039112.2	human	genbank	58_37c	+1	validated	silent	c.3240	p.Y1080	1.000	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
FGD6	0	genome.wustl.edu	37	12	95501370	95501370	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	95501370	95501370	C	T	SNP	FGD6	NM_018351.3	human	genbank	58_37c	-1	validated	missense	c.3302	p.R1101Q	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1,superfamily_PH domain-like	-	no_errors
GALNT9	0	genome.wustl.edu	37	12	132905608	132905608	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	132905608	132905608	T	G	SNP	GALNT9	ENST00000328957	human	ensembl	58_37c	-1	known	missense	c.182	p.E61A	1.000	NULL	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,PatternScan_WW_DOMAIN_1,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GALNT9	0	genome.wustl.edu	37	12	132905684	132905684	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	132905684	132905684	C	A	SNP	GALNT9	ENST00000328957	human	ensembl	58_37c	-1	known	nonsense	c.106	p.E36*	1.000	NULL	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,PatternScan_WW_DOMAIN_1,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GOLGA6L5	0	genome.wustl.edu	37	15	85055754	85055756	+	RNA	DEL	CTC	CTC	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	85055754	85055756	CTC	-	DEL	GOLGA6L5	NR_003246.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.543:0.660:0.746	-	-	-	pseudogene
GPRASP2	0	genome.wustl.edu	37	X	101971743	101971743	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	101971743	101971743	A	T	SNP	GPRASP2	NM_001004051.2	human	genbank	58_37c	+1	reviewed	missense	c.1946	p.Y649F	0.999	HMMPfam_DUF634	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
GRID2	0	genome.wustl.edu	37	4	94436426	94436426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	94436426	94436426	C	T	SNP	GRID2	NM_001510.2	human	genbank	58_37c	+1	validated	missense	c.2057	p.A686V	1.000	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
GTF3C1	0	genome.wustl.edu	37	16	27483171	27483171	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	27483171	27483171	C	A	SNP	GTF3C1	NM_001520.3	human	genbank	58_37c	-1	validated	missense	c.4424	p.S1475I	1.000	NULL	HMMPfam_B-block_TFIIIC	-	no_errors
HDAC6	0	genome.wustl.edu	37	X	48672886	48672886	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	48672886	48672886	G	T	SNP	HDAC6	NM_006044.2	human	genbank	58_37c	+1	reviewed	missense	c.846	p.R282S	0.000	HMMPfam_Hist_deacetyl,superfamily_SSF52768	HMMPfam_Hist_deacetyl,HMMPfam_zf-UBP,HMMSmart_ZnF_UBP,superfamily_SSF52768	-	no_errors
HMCN1	0	genome.wustl.edu	37	1	186036993	186036993	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	186036993	186036993	G	A	SNP	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	missense	c.7733	p.S2578N	0.000	HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
HNF1B	0	genome.wustl.edu	37	17	36099431	36099431	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	36099431	36099431	G	A	SNP	HNF1B	NM_000458.2	human	genbank	58_37c	-1	reviewed	nonsense	c.544	p.Q182*	1.000	HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_HNF-1B_C,HMMPfam_HNF-1_N,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1,superfamily_Dimerization cofactor of HNF-1 alpha	-	no_errors
IGHJ5	0	genome.wustl.edu	37	14	106330033	106330033	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	106330033	106330033	C	G	SNP	IGHJ5	ENST00000488476	human	ensembl	58_37c	-1	known	missense	c.40	p.V14L	0.379	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
ITGA5	0	genome.wustl.edu	37	12	54803355	54803355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	54803355	54803355	A	G	SNP	ITGA5	NM_002205.2	human	genbank	58_37c	-1	reviewed	missense	c.376	p.S126P	0.268	superfamily_SSF69318	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
ITGB3	0	genome.wustl.edu	37	17	45376772	45376772	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	45376772	45376772	A	G	SNP	ITGB3	NM_000212.2	human	genbank	58_37c	+1	reviewed	missense	c.1789	p.N597D	0.929	HMMPfam_EGF_2,superfamily_EGF/Laminin	HMMPfam_Integrin_beta,HMMSmart_SM00187,HMMSmart_SM00423,HMMPfam_Integrin_B_tail,superfamily_Integrin beta tail domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,HMMPfam_Integrin_b_cyt,PatternScan_INTEGRIN_BETA,superfamily_vWA-like,superfamily_EGF/Laminin,superfamily_Integrin domains	-	no_errors
IVL	0	genome.wustl.edu	37	1	152882851	152882851	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	152882851	152882851	T	G	SNP	IVL	NM_005547.2	human	genbank	58_37c	+1	reviewed	missense	c.578	p.L193R	0.000	HMMPfam_Involucrin	HMMPfam_Involucrin,HMMPfam_Involucrin_N,PatternScan_INVOLUCRIN	-	no_errors
IVNS1ABP	0	genome.wustl.edu	37	1	185270573	185270573	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	185270573	185270573	C	G	SNP	IVNS1ABP	NM_006469.4	human	genbank	58_37c	-1	validated	missense	c.888	p.K296N	1.000	NULL	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KCNMA1	0	genome.wustl.edu	37	10	78674713	78674713	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	78674713	78674713	G	A	SNP	KCNMA1	ENST00000372403	human	ensembl	58_37c	-1	known	missense	c.2675	p.S892F	1.000	NULL	PatternScan_N6_MTASE,HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Voltage-gated potassium channels	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KIAA1614	0	genome.wustl.edu	37	1	180886055	180886055	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	180886055	180886055	G	T	SNP	KIAA1614	NM_020950.1	human	genbank	58_37c	+1	validated	silent	c.816	p.L272	0.000	NULL	NULL	-	no_errors
LAMP3	0	genome.wustl.edu	37	3	182841959	182841960	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	182841959	182841960	-	C	INS	LAMP3	NM_014398.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1161_1160	p.I387fs	0.985:1.000	HMMPfam_Lamp	HMMPfam_Lamp	-	no_errors
LIPE	0	genome.wustl.edu	37	19	42907078	42907078	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	42907078	42907078	C	G	SNP	LIPE	NM_005357.2	human	genbank	58_37c	-1	reviewed	missense	c.2648	p.G883A	0.511	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases	PatternScan_LIPASE_GDXG_HIS,PatternScan_LIPASE_GDXG_SER,HMMPfam_HSL_N,HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases	-	no_errors
LOC100129711	0	genome.wustl.edu	37	6	90659819	90659819	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	90659819	90659819	G	A	SNP	LOC100129711	XM_001715261.1	human	genbank	58_37c	+1	model	missense	c.3	p.M1I	0.000	NULL	NULL	-	no_errors
LOC100132733	0	genome.wustl.edu	37	1	143211617	143211617	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	143211617	143211617	T	A	SNP	LOC100132733	XM_001715342.2	human	genbank	58_37c	-1	model	missense	c.710	p.Q237L	0.086	NULL	NULL	-	no_errors
LOC100289441	0	genome.wustl.edu	37	3	9985860	9985860	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	9985860	9985860	C	G	SNP	LOC100289441	XM_002342359.1	human	genbank	58_37c	-1	model	missense	c.340	p.E114Q	0.005	NULL	NULL	-	no_errors
LOC100289506	0	genome.wustl.edu	37	7	75959386	75959386	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	75959386	75959386	C	T	SNP	LOC100289506	XM_002342770.1	human	genbank	58_37c	+1	model	missense	c.676	p.R226C	0.869	NULL	NULL	-	no_errors
LOC644063	0	genome.wustl.edu	37	3	96069180	96069210	+	RNA	DEL	TTGACAGAATGCCTCCTGGTCAGGGTGGGCG	TTGACAGAATGCCTCCTGGTCAGGGTGGGCG	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	TTGACAGAATGCCTCCTGGTCAGGGTGGGCG	TTGACAGAATGCCTCCTGGTCAGGGTGGGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	96069180	96069210	TTGACAGAATGCCTCCTGGTCAGGGTGGGCG	-	DEL	LOC644063	XR_016547.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000:1.000:1.000:1.000:0.997:0.999:1.000:0.998:0.998:0.998:1.000:0.999:0.998:0.993:0.998:1.000:0.999:1.000:0.998:0.947:0.926:0.895:0.881:0.989:0.998:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	pseudogene
LOC646626	0	genome.wustl.edu	37	1	85742309	85742309	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	85742309	85742309	G	C	SNP	LOC646626	XM_933781.4	human	genbank	58_37c	+1	model	silent	c.129	p.A43	0.033	NULL	NULL	-	no_errors
LY6G6D	0	genome.wustl.edu	37	6	31685496	31685496	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	31685496	31685496	T	G	SNP	LY6G6D	NM_021246.2	human	genbank	58_37c	+1	validated	missense	c.317	p.V106G	0.003	NULL	PatternScan_LY6_UPAR	-	no_errors
MAD2L1BP	0	genome.wustl.edu	37	6	43607982	43607982	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	43607982	43607982	G	C	SNP	MAD2L1BP	NM_001003690.1	human	genbank	58_37c	+1	reviewed	missense	c.633	p.Q211H	0.180	HMMPfam_DUF1135	HMMPfam_DUF1135	-	no_errors
MECOM	0	genome.wustl.edu	37	3	168819968	168819975	+	Frame_Shift_Del	DEL	GCACTGAA	GCACTGAA	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	GCACTGAA	GCACTGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	168819968	168819975	GCACTGAA	-	DEL	MECOM	ENST00000494292	human	ensembl	58_37c	-1	known	frame_shift_del	c.2624_2617	p.F873fs	1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MED7	0	genome.wustl.edu	37	5	156565934	156565934	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	156565934	156565934	G	C	SNP	MED7	NM_001100816.1	human	genbank	58_37c	-1	reviewed	missense	c.509	p.S170C	1.000	HMMPfam_MED7	HMMPfam_MED7	-	no_errors
MSH2	0	genome.wustl.edu	37	2	47702380	47702380	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	47702380	47702380	A	C	SNP	MSH2	NM_000251.1	human	genbank	58_37c	+1	reviewed	missense	c.1976	p.K659T	1.000	HMMPfam_MutS_V,superfamily_SSF52540	HMMPfam_MutS_V,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2,HMMPfam_MutS_I,HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_II,HMMPfam_MutS_IV,superfamily_SSF52540	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1268164	1268164	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	1268164	1268164	A	G	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.10063	p.I3355V	0.758	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1268543	1268543	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	1268543	1268543	T	C	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.10442	p.I3481T	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1268553	1268553	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	1268553	1268553	C	G	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.10452	p.T3484	0.883	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYH7	0	genome.wustl.edu	37	14	23891449	23891449	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	23891449	23891449	G	A	SNP	MYH7	NM_000257.2	human	genbank	58_37c	-1	reviewed	missense	c.3185	p.T1062I	1.000	superfamily_Prefoldin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYH8	0	genome.wustl.edu	37	17	10301949	10301949	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	10301949	10301949	G	A	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	silent	c.3990	p.N1330	0.879	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NAT8L	0	genome.wustl.edu	37	4	2065586	2065586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	2065586	2065586	C	T	SNP	NAT8L	NM_178557.3	human	genbank	58_37c	+1	validated	missense	c.137	p.S46F	1.000	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
NAV2	0	genome.wustl.edu	37	11	19864448	19864460	+	Frame_Shift_Del	DEL	TCCGAAGAACAGA	TCCGAAGAACAGA	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	TCCGAAGAACAGA	TCCGAAGAACAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	19864448	19864460	TCCGAAGAACAGA	-	DEL	NAV2	NM_182964.5	human	genbank	58_37c	+1	validated	frame_shift_del	c.417_429	p.N142fs	1.000:1.000:0.998:0.739:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NOP10	0	genome.wustl.edu	37	15	34635251	34635251	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	34635251	34635251	G	C	SNP	NOP10	NM_018648.3	human	genbank	58_37c	-1	reviewed	missense	c.24	p.N8K	1.000	HMMPfam_Nop10p	HMMPfam_Nop10p	-	no_errors
NPR2	0	genome.wustl.edu	37	9	35801760	35801760	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	35801760	35801760	G	A	SNP	NPR2	NM_003995.3	human	genbank	58_37c	+1	reviewed	silent	c.1557	p.L519	1.000	HMMSmart_SM00219,HMMSmart_SM00220	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_ANF_RECEPTORS,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
NUPR1	0	genome.wustl.edu	37	16	28549435	28549435	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	28549435	28549435	C	T	SNP	NUPR1	NM_001042483.1	human	genbank	58_37c	-1	validated	missense	c.208	p.A70T	0.112	HMMPfam_Phospho_p8	HMMPfam_Phospho_p8	-	no_errors
NYNRIN	0	genome.wustl.edu	37	14	24877309	24877309	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	24877309	24877309	C	G	SNP	NYNRIN	NM_025081.2	human	genbank	58_37c	+1	validated	missense	c.433	p.P145A	0.137	NULL	superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases	-	no_errors
OR13C9	0	genome.wustl.edu	37	9	107379675	107379675	+	Missense_Mutation	SNP	C	C	T	rs143297558	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	107379675	107379675	C	T	SNP	OR13C9	NM_001001956.1	human	genbank	58_37c	-1	provisional	missense	c.811	p.D271N	0.152	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR13J1	0	genome.wustl.edu	37	9	35870175	35870175	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	35870175	35870175	G	C	SNP	OR13J1	NM_001004487.1	human	genbank	58_37c	-1	provisional	missense	c.224	p.P75R	0.438	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5B3	0	genome.wustl.edu	37	11	58170265	58170265	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	58170265	58170265	A	G	SNP	OR5B3	NM_001005469.1	human	genbank	58_37c	-1	validated	silent	c.618	p.F206	0.003	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
P4HA3	0	genome.wustl.edu	37	11	74000171	74000171	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	11	74000171	74000171	C	T	SNP	P4HA3	NM_182904.3	human	genbank	58_37c	-1	reviewed	missense	c.722	p.G241E	1.000	superfamily_TPR-like	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702,HMMPfam_P4Ha_N,superfamily_TPR-like	-	no_errors
PAX2	0	genome.wustl.edu	37	10	102584408	102584408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	102584408	102584408	G	A	SNP	PAX2	NM_003988.3	human	genbank	58_37c	+1	reviewed	missense	c.923	p.R308H	1.000	NULL	HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like	-	no_errors
PCDH17	0	genome.wustl.edu	37	13	58299427	58299428	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	13	58299427	58299428	-	A	INS	PCDH17	NM_001040429.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.3479_3480	p.*1161fs	1.000:0.987	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHA12	0	genome.wustl.edu	37	5	140256083	140256083	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	140256083	140256083	C	T	SNP	PCDHA12	NM_018903.2	human	genbank	58_37c	+1	reviewed	silent	c.1026	p.D342	0.865	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHGA12	0	genome.wustl.edu	37	5	140811837	140811837	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	140811837	140811837	A	C	SNP	PCDHGA12	NM_003735.2	human	genbank	58_37c	+1	reviewed	missense	c.1511	p.Y504S	0.729	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIGZ	0	genome.wustl.edu	37	3	196675280	196675280	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	196675280	196675280	G	C	SNP	PIGZ	NM_025163.2	human	genbank	58_37c	-1	reviewed	missense	c.488	p.S163C	0.672	HMMPfam_Glyco_transf_22	HMMPfam_Glyco_transf_22	-	no_errors
PIK3R3	0	genome.wustl.edu	37	1	46511674	46511674	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	46511674	46511674	G	A	SNP	PIK3R3	NM_001114172.1	human	genbank	58_37c	-1	validated	missense	c.1103	p.A368V	1.000	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	-	no_errors
PLEKHA6	0	genome.wustl.edu	37	1	204230534	204230534	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	1	204230534	204230534	T	A	SNP	PLEKHA6	NM_014935.2	human	genbank	58_37c	-1	validated	missense	c.424	p.S142C	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
PNPT1	0	genome.wustl.edu	37	2	55920943	55920943	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	55920943	55920943	A	C	SNP	PNPT1	NM_033109.3	human	genbank	58_37c	-1	validated	missense	c.16	p.Y6D	0.086	NULL	HMMPfam_RNase_PH,HMMSmart_KH,HMMPfam_RNase_PH_C,superfamily_3_ExoRNase,HMMPfam_PNPase,superfamily_Nucleic_acid_OB,HMMPfam_KH_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMSmart_S1,superfamily_SSF54791	-	no_errors
PPY2	0	genome.wustl.edu	37	17	26574658	26574658	+	RNA	SNP	T	T	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	26574658	26574658	T	G	SNP	PPY2	NR_002181.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.980	-	-	-	pseudogene
PRKDC	0	genome.wustl.edu	37	8	48839765	48839765	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	48839765	48839765	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	58_37c	-1	known	nonsense	c.2408	p.S803*	0.093	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRKRA	0	genome.wustl.edu	37	2	179315735	179315736	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	179315735	179315736	GC	-	DEL	PRKRA	NM_003690.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.23_22	p.A8fs	0.987:0.993	NULL	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	-	no_errors
PTBP1	0	genome.wustl.edu	37	19	808581	808581	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	808581	808581	A	G	SNP	PTBP1	NM_002819.4	human	genbank	58_37c	+1	reviewed	missense	c.1282	p.K428E	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
PUM2	0	genome.wustl.edu	37	2	20512037	20512037	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	20512037	20512037	G	A	SNP	PUM2	NM_015317.1	human	genbank	58_37c	-1	provisional	missense	c.308	p.P103L	1.000	NULL	HMMPfam_PUF,HMMSmart_SM00025,superfamily_ARM repeat	-	no_errors
QARS	0	genome.wustl.edu	37	3	49136104	49136104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	49136104	49136104	G	A	SNP	QARS	NM_005051.1	human	genbank	58_37c	-1	reviewed	missense	c.1885	p.R629C	1.000	superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c_C	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA_synt_1c_R2,HMMPfam_tRNA_synt_1c_R1,superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c,HMMPfam_tRNA-synt_1c_C,superfamily_SSF52374	-	no_errors
RAPGEF5	0	genome.wustl.edu	37	7	22190031	22190039	+	In_Frame_Del	DEL	GTCCGCCAG	GTCCGCCAG	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	GTCCGCCAG	GTCCGCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	22190031	22190039	GTCCGCCAG	-	DEL	RAPGEF5	NM_012294.3	human	genbank	58_37c	-1	validated	in_frame_del	c.1419_1411	p.LAD471in_frame_del	0.970:1.000:1.000:0.943:0.998:0.998:1.000:1.000:1.000	superfamily_Ras GEF	"HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RASSF2	0	genome.wustl.edu	37	20	4773210	4773210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	20	4773210	4773210	C	T	SNP	RASSF2	NM_014737.2	human	genbank	58_37c	-1	reviewed	silent	c.351	p.E117	0.009	NULL	HMMPfam_RA,HMMSmart_RA	-	no_errors
RBM12	0	genome.wustl.edu	37	20	34241980	34241980	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	20	34241980	34241980	G	C	SNP	RBM12	NM_006047.4	human	genbank	58_37c	-1	reviewed	nonsense	c.1265	p.S422*	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
REV3L	0	genome.wustl.edu	37	6	111694984	111694984	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	111694984	111694984	G	C	SNP	REV3L	NM_002912.3	human	genbank	58_37c	-1	validated	missense	c.4574	p.S1525C	1.000	superfamily_Ribonuclease H-like	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_SM00486,superfamily_Ribonuclease H-like,PatternScan_DNA_POLYMERASE_B,superfamily_DNA/RNA polymerases	-	no_errors
RFX6	0	genome.wustl.edu	37	6	117249959	117249959	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	117249959	117249959	C	G	SNP	RFX6	NM_173560.2	human	genbank	58_37c	+1	validated	missense	c.2436	p.H812Q	0.945	NULL	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors
RHOBTB1	0	genome.wustl.edu	37	10	62648195	62648226	+	Frame_Shift_Del	DEL	AAGGGCCTGGCTGGACTGAAGCGTCCATCCTG	AAGGGCCTGGCTGGACTGAAGCGTCCATCCTG	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	AAGGGCCTGGCTGGACTGAAGCGTCCATCCTG	AAGGGCCTGGCTGGACTGAAGCGTCCATCCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	62648195	62648226	AAGGGCCTGGCTGGACTGAAGCGTCCATCCTG	-	DEL	RHOBTB1	NM_014836.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1231_1200	p.R401fs	1.000:1.000:1.000:1.000:0.988:1.000:1.000:0.691:0.690:0.715:0.967:1.000:1.000:0.860:0.907:0.724:0.040:0.945:0.940:0.000:0.340:0.350:0.880:1.000:1.000:1.000:1.000:0.996:0.346:0.342:0.381:0.558	HMMSmart_BTB,superfamily_BTB/POZ_fold	HMMSmart_BTB,HMMSmart_RHO,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RNF208	0	genome.wustl.edu	37	9	140114992	140114992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	140114992	140114992	C	T	SNP	RNF208	NM_031297.3	human	genbank	58_37c	-1	validated	missense	c.673	p.G225S	0.970	NULL	HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
RPS6KA2	0	genome.wustl.edu	37	6	166831734	166831734	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	166831734	166831734	G	T	SNP	RPS6KA2	NM_001006932.1	human	genbank	58_37c	-1	reviewed	missense	c.1941	p.D647E	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RYR3	0	genome.wustl.edu	37	15	34064213	34064213	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	15	34064213	34064213	A	T	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.8909	p.N2970I	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SAMD12	0	genome.wustl.edu	37	8	119391733	119391733	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	119391733	119391733	C	G	SNP	SAMD12	NM_207506.2	human	genbank	58_37c	-1	validated	missense	c.529	p.G177R	0.000	NULL	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2	-	no_errors
SIGLEC9	0	genome.wustl.edu	37	19	51628890	51628890	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	51628890	51628890	C	A	SNP	SIGLEC9	NM_014441.1	human	genbank	58_37c	+1	provisional	missense	c.458	p.T153N	0.000	superfamily_SSF48726	HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
SIX1	0	genome.wustl.edu	37	14	61113081	61113081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	14	61113081	61113081	C	T	SNP	SIX1	NM_005982.3	human	genbank	58_37c	-1	reviewed	missense	c.775	p.G259S	0.994	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
SLC25A39	0	genome.wustl.edu	37	17	42398003	42398003	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	42398003	42398003	C	A	SNP	SLC25A39	NM_001143780.1	human	genbank	58_37c	-1	validated	missense	c.788	p.G263V	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SLC30A8	0	genome.wustl.edu	37	8	118183309	118183318	+	Frame_Shift_Del	DEL	AGCTTATTTT	AGCTTATTTT	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	AGCTTATTTT	AGCTTATTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	118183309	118183318	AGCTTATTTT	-	DEL	SLC30A8	NM_173851.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.866_875	p.L290fs	0.888:0.054:0.026:0.023:0.003:0.005:0.049:0.002:0.001:0.005	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
SLC38A4	0	genome.wustl.edu	37	12	47172298	47172298	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	47172298	47172298	C	G	SNP	SLC38A4	NM_001143824.1	human	genbank	58_37c	-1	validated	missense	c.979	p.V327L	0.993	HMMPfam_Aa_trans	HMMPfam_Aa_trans,PatternScan_RIBOSOMAL_L30	-	no_errors
SLC39A5	0	genome.wustl.edu	37	12	56625219	56625219	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	12	56625219	56625219	C	A	SNP	SLC39A5	NM_001135195.1	human	genbank	58_37c	+1	validated	missense	c.161	p.T54N	0.985	NULL	HMMPfam_Zip	-	no_errors
SLC7A6	0	genome.wustl.edu	37	16	68330554	68330554	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	68330554	68330554	T	A	SNP	SLC7A6	NM_001076785.1	human	genbank	58_37c	+1	validated	missense	c.1294	p.F432I	1.000	HMMPfam_AA_permease	PatternScan_AMINO_ACID_PERMEASE_1,HMMPfam_AA_permease	-	no_errors
SNCAIP	0	genome.wustl.edu	37	5	121780266	121780266	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	5	121780266	121780266	T	A	SNP	SNCAIP	NM_005460.2	human	genbank	58_37c	+1	reviewed	silent	c.1431	p.V477	0.999	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
SNRNP70	0	genome.wustl.edu	37	19	49610881	49610881	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	49610881	49610881	G	C	SNP	SNRNP70	NM_003089.4	human	genbank	58_37c	+1	validated	splice_site	c.578-1	e8-1	1.000	-	-	-	no_errors
STARD3	0	genome.wustl.edu	37	17	37809976	37809976	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	37809976	37809976	C	T	SNP	STARD3	NM_006804.3	human	genbank	58_37c	+1	reviewed	silent	c.192	p.I64	1.000	HMMPfam_MENTAL	HMMPfam_START,HMMSmart_START,HMMPfam_MENTAL,superfamily_SSF55961	-	no_errors
SVEP1	0	genome.wustl.edu	37	9	113208280	113208288	+	In_Frame_Del	DEL	CAGAAACTT	CAGAAACTT	-	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	CAGAAACTT	CAGAAACTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	113208280	113208288	CAGAAACTT	-	DEL	SVEP1	NM_153366.3	human	genbank	58_37c	-1	validated	in_frame_del	c.4300_4292	p.EVS1431in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Pentaxin,HMMSmart_SM00159,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_HYR,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152464831	152464831	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	6	152464831	152464831	A	C	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	missense	c.25046	p.I8349R	1.000	superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
SYT17	0	genome.wustl.edu	37	16	19195047	19195047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	16	19195047	19195047	G	A	SNP	SYT17	NM_016524.2	human	genbank	58_37c	+1	validated	missense	c.529	p.E177K	1.000	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TAF7L	0	genome.wustl.edu	37	X	100531448	100531448	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	100531448	100531448	C	T	SNP	TAF7L	NM_024885.3	human	genbank	58_37c	-1	reviewed	missense	c.1018	p.D340N	0.002	NULL	HMMPfam_TAFII55_N	-	no_errors
TBX20	0	genome.wustl.edu	37	7	35242254	35242254	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	35242254	35242254	G	C	SNP	TBX20	NM_001077653.2	human	genbank	58_37c	-1	reviewed	missense	c.1132	p.P378A	1.000	NULL	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TES	0	genome.wustl.edu	37	7	115889294	115889294	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	115889294	115889294	G	A	SNP	TES	NM_015641.2	human	genbank	58_37c	+1	reviewed	missense	c.334	p.E112K	1.000	HMMPfam_PET	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
TEX101	0	genome.wustl.edu	37	19	43920373	43920373	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	43920373	43920373	A	T	SNP	TEX101	NM_031451.4	human	genbank	58_37c	+1	validated	missense	c.241	p.T81S	0.041	NULL	HMMPfam_UPAR_LY6	-	no_errors
TRANK1	0	genome.wustl.edu	37	3	36899136	36899136	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	36899136	36899136	T	C	SNP	TRANK1	NM_014831.2	human	genbank	58_37c	-1	provisional	missense	c.295	p.T99A	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TRPM2	0	genome.wustl.edu	37	21	45789136	45789136	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	21	45789136	45789136	G	C	SNP	TRPM2	NM_003307.3	human	genbank	58_37c	+1	reviewed	silent	c.681	p.L227	1.000	NULL	PatternScan_CHITINASE_18,HMMPfam_Ion_trans,superfamily_Nudix	-	no_errors
TXNDC8	0	genome.wustl.edu	37	9	113066787	113066787	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	9	113066787	113066787	C	A	SNP	TXNDC8	NM_001003936.2	human	genbank	58_37c	-1	validated	missense	c.281	p.R94I	0.998	NULL	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	-	no_errors
VPRBP	0	genome.wustl.edu	37	3	51440606	51440606	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	51440606	51440606	T	A	SNP	VPRBP	NM_014703.2	human	genbank	58_37c	-1	validated	missense	c.4277	p.D1426V	1.000	NULL	HMMSmart_SM00667,superfamily_WD40 repeat-like,HMMPfam_LisH,superfamily_ARM repeat	-	no_errors
WDFY3	0	genome.wustl.edu	37	4	85663022	85663022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	85663022	85663022	C	T	SNP	WDFY3	NM_014991.4	human	genbank	58_37c	-1	reviewed	silent	c.6126	p.V2042	1.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,superfamily_FYVE/PHD zinc finger,superfamily_Cyclin-like,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
WDFY4	0	genome.wustl.edu	37	10	49988074	49988074	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	10	49988074	49988074	G	A	SNP	WDFY4	NM_020945.1	human	genbank	58_37c	+1	validated	nonsense	c.3486	p.W1162*	1.000	NULL	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
WFIKKN2	0	genome.wustl.edu	37	17	48913406	48913406	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	48913406	48913406	G	A	SNP	WFIKKN2	NM_175575.5	human	genbank	58_37c	+1	reviewed	silent	c.108	p.P36	0.009	NULL	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,HMMSmart_KAZAL,PatternScan_KAZAL,HMMSmart_IGc2,HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,superfamily_TIMP_like,HMMPfam_Kazal_2,HMMPfam_I-set,PatternScan_4_DISULFIDE_CORE,superfamily_SSF100895,superfamily_SSF48726	-	no_errors
YEATS2	0	genome.wustl.edu	37	3	183524710	183524710	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	3	183524710	183524710	C	A	SNP	YEATS2	NM_018023.4	human	genbank	58_37c	+1	validated	missense	c.3841	p.Q1281K	1.000	NULL	HMMPfam_YEATS	-	no_errors
ZBTB49	0	genome.wustl.edu	37	4	4322987	4322987	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	4	4322987	4322987	A	T	SNP	ZBTB49	NM_145291.3	human	genbank	58_37c	+1	validated	missense	c.2242	p.T748S	1.000	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFP64	0	genome.wustl.edu	37	20	50769649	50769649	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	20	50769649	50769649	T	G	SNP	ZFP64	NM_018197.2	human	genbank	58_37c	-1	validated	missense	c.1082	p.H361P	1.000	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFPM2	0	genome.wustl.edu	37	8	106814376	106814376	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	8	106814376	106814376	G	C	SNP	ZFPM2	NM_012082.3	human	genbank	58_37c	+1	reviewed	missense	c.2066	p.C689S	1.000	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF137	0	genome.wustl.edu	37	19	53100744	53100744	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	19	53100744	53100744	G	C	SNP	ZNF137	NR_023311.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.077	-	-	-	pseudogene
ZNF41	0	genome.wustl.edu	37	X	47308257	47308257	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	X	47308257	47308257	G	C	SNP	ZNF41	NM_007130.2	human	genbank	58_37c	-1	reviewed	missense	c.912	p.S304R	0.387	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF786	0	genome.wustl.edu	37	7	148768278	148768278	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	7	148768278	148768278	C	G	SNP	ZNF786	NM_152411.3	human	genbank	58_37c	-1	validated	missense	c.1586	p.R529T	0.001	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF830	0	genome.wustl.edu	37	17	33288605	33288605	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	17	33288605	33288605	C	A	SNP	ZNF830	NM_052857.3	human	genbank	58_37c	+1	validated	missense	c.20	p.A7D	0.000	NULL	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZSWIM2	0	genome.wustl.edu	37	2	187693353	187693353	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24H-01A-11D-A167-09	TCGA-AR-A24H-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6bb61dce-289d-4e39-8298-df5abe8049a2	c1697a30-99bb-4999-b91a-36d587c1faab	2	187693353	187693353	T	A	SNP	ZSWIM2	NM_182521.2	human	genbank	58_37c	-1	validated	missense	c.1260	p.K420N	0.896	NULL	HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_RING,HMMPfam_SWIM,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
