Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA8	0	genome.wustl.edu	37	17	66920927	66920927	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	66920927	66920927	G	T	SNP	ABCA8	NM_007168.2	human	genbank	58_37c	-1	reviewed	missense	c.1357	p.L453I	0.211	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C12orf12	0	genome.wustl.edu	37	12	91347459	91347459	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	91347459	91347459	C	T	SNP	C12orf12	NM_152638.2	human	genbank	58_37c	-1	predicted	missense	c.1061	p.G354E	0.041	NULL	NULL	-	no_errors
CHST8	0	genome.wustl.edu	37	19	34263642	34263642	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	34263642	34263642	G	A	SNP	CHST8	NM_001127895.1	human	genbank	58_37c	+1	validated	missense	c.949	p.D317N	1.000	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
CYP2S1	0	genome.wustl.edu	37	19	41704416	41704416	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	41704416	41704416	A	T	SNP	CYP2S1	NM_030622.6	human	genbank	58_37c	+1	reviewed	silent	c.543	p.V181	0.001	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
EEF2	0	genome.wustl.edu	37	19	3983150	3983150	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	3983150	3983150	G	C	SNP	EEF2	NM_001961.3	human	genbank	58_37c	-1	reviewed	missense	c.358	p.R120G	1.000	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_EFG_C,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D2,HMMPfam_EFG_IV,superfamily_Translation proteins,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EGF	0	genome.wustl.edu	37	4	110925680	110925680	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	4	110925680	110925680	A	G	SNP	EGF	NM_001963.4	human	genbank	58_37c	+1	reviewed	missense	c.3193	p.K1065E	0.003	NULL	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
ENSG00000184206	0	genome.wustl.edu	37	15	84909434	84909434	+	Missense_Mutation	SNP	G	G	A	rs2175418	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	15	84909434	84909434	G	A	SNP	ENSG00000184206	ENST00000510439	human	ensembl	58_37c	+1	known	missense	c.1328	p.R443Q	0.001	NULL	NULL	-	no_errors
FRG1	0	genome.wustl.edu	37	4	190878589	190878589	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	4	190878589	190878589	A	G	SNP	FRG1	NM_004477.2	human	genbank	58_37c	+1	reviewed	missense	c.469	p.I157V	1.000	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	PatternScan_LIPOCALIN,superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377105	168377105	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	6	168377105	168377105	G	A	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	silent	c.228	p.V76	0.938	NULL	NULL	-	no_errors
IGDCC3	0	genome.wustl.edu	37	15	65622726	65622726	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	15	65622726	65622726	G	A	SNP	IGDCC3	NM_004884.3	human	genbank	58_37c	-1	validated	missense	c.1763	p.A588V	0.004	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
KCNH8	0	genome.wustl.edu	37	3	19295241	19295241	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	19295241	19295241	A	G	SNP	KCNH8	NM_144633.2	human	genbank	58_37c	+1	reviewed	missense	c.172	p.T58A	1.000	HMMPfam_PAS,superfamily_SSF55785	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMSmart_PAC,HMMPfam_Ion_trans,HMMPfam_PAS,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF55785,superfamily_SSF81324	-	no_errors
LIPT1	0	genome.wustl.edu	37	2	99778927	99778927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	2	99778927	99778927	C	T	SNP	LIPT1	NM_015929.3	human	genbank	58_37c	+1	reviewed	silent	c.507	p.I169	0.992	HMMPfam_BPL_LipA_LipB	HMMPfam_BPL_LipA_LipB	-	no_errors
LOC100290293	0	genome.wustl.edu	37	14	53353008	53353011	+	RNA	DEL	AGAC	AGAC	-	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	AGAC	AGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	14	53353008	53353011	AGAC	-	DEL	LOC100290293	XR_079348.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.009:0.010:0.011:0.011	-	-	-	pseudogene
LOC646813	0	genome.wustl.edu	37	11	50379454	50379455	+	RNA	INS	-	-	TTGTT	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	11	50379454	50379455	-	TTGTT	INS	LOC646813	NR_024504.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
LOC653125	0	genome.wustl.edu	37	15	32689491	32689491	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	15	32689491	32689491	T	C	SNP	LOC653125	XM_001724745.2	human	genbank	58_37c	-1	model	silent	c.699	p.Q233	0.003	NULL	NULL	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123027	16123027	+	RNA	SNP	T	T	G	rs7292044	byFrequency	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	22	16123027	16123027	T	G	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRGUK	0	genome.wustl.edu	37	7	133842882	133842882	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	133842882	133842882	A	G	SNP	LRGUK	NM_144648.1	human	genbank	58_37c	+1	provisional	silent	c.765	p.L255	0.015	HMMPfam_LRR_1,superfamily_SSF52058	HMMPfam_LRR_1,HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52058,superfamily_SSF52540	-	no_errors
MET	0	genome.wustl.edu	37	7	116399515	116399515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	116399515	116399515	G	A	SNP	MET	NM_001127500.1	human	genbank	58_37c	+1	reviewed	missense	c.2389	p.V797M	0.964	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,superfamily_Ig_E-set,superfamily_Plexin-like_fold,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
MICAL1	0	genome.wustl.edu	37	6	109767631	109767632	+	Frame_Shift_Ins	INS	-	-	GTGGTCTGGTCAGTGACCTGCCCAGG	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	6	109767631	109767632	-	GTGGTCTGGTCAGTGACCTGCCCAGG	INS	MICAL1	ENST00000335266	human	ensembl	58_37c	-1	known	frame_shift_ins	c.58_57	p.W19fs	0.003:0.001	NULL	NULL	-	no_errors
MPV17L2	0	genome.wustl.edu	37	19	18304729	18304729	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	18304729	18304729	G	A	SNP	MPV17L2	NM_032683.2	human	genbank	58_37c	+1	validated	silent	c.243	p.L81	0.623	NULL	HMMPfam_Mpv17_PMP22	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100641798	100641798	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	100641798	100641798	C	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.8383	p.P2795A	0.002	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NCOR1	0	genome.wustl.edu	37	17	15973477	15973477	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	15973477	15973477	A	G	SNP	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	splice_site	c.4513+2	e30+2	1.000	-	-	-	no_errors
OFD1	0	genome.wustl.edu	37	X	13774756	13774756	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	X	13774756	13774756	G	T	SNP	OFD1	NM_003611.2	human	genbank	58_37c	+1	reviewed	silent	c.1281	p.L427	0.887	NULL	HMMSmart_SM00667,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
OTOP1	0	genome.wustl.edu	37	4	4204225	4204229	+	Frame_Shift_Del	DEL	TTGAG	TTGAG	-	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	TTGAG	TTGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	4	4204225	4204229	TTGAG	-	DEL	OTOP1	NM_177998.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.680_676	p.L226fs	0.998:0.995:0.417:0.986:0.987	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors
PADI6	0	genome.wustl.edu	37	1	17701986	17701986	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	1	17701986	17701986	C	G	SNP	PADI6	NM_207421.3	human	genbank	58_37c	+1	validated	missense	c.359	p.T120S	0.986	superfamily_Cupredoxins,HMMPfam_PAD_N	superfamily_Cupredoxins,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,superfamily_Pentein	-	pseudogene
PI15	0	genome.wustl.edu	37	8	75756324	75756324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	8	75756324	75756324	C	T	SNP	PI15	NM_015886.3	human	genbank	58_37c	+1	reviewed	missense	c.382	p.R128C	0.989	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular,PatternScan_CRISP_1,PatternScan_CRISP_2	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178921567	178921567	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	178921567	178921567	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1049	p.D350G	1.000	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PML	0	genome.wustl.edu	37	15	74327557	74327558	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	15	74327557	74327558	-	A	INS	PML	NM_033239.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1755_1756	p.H585fs	0.002:0.001	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
POM121L10P	0	genome.wustl.edu	37	22	25045815	25045815	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	22	25045815	25045815	G	C	SNP	POM121L10P	NR_024593.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.001	-	-	-	pseudogene
PRKCD	0	genome.wustl.edu	37	3	53223092	53223092	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	53223092	53223092	T	A	SNP	PRKCD	NM_006254.3	human	genbank	58_37c	+1	reviewed	missense	c.1573	p.Y525N	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_C2,HMMSmart_S_TK_X,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_C2_CaLB,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_SSF57889	-	no_errors
RRBP1	0	genome.wustl.edu	37	20	17641006	17641006	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	20	17641006	17641006	C	T	SNP	RRBP1	NM_001042576.1	human	genbank	58_37c	-1	reviewed	missense	c.147	p.M49I	1.000	HMMPfam_Rib_recp_KP_reg	HMMPfam_Rib_recp_KP_reg	-	no_errors
SETX	0	genome.wustl.edu	37	9	135172419	135172419	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	9	135172419	135172419	T	C	SNP	SETX	NM_015046.5	human	genbank	58_37c	-1	reviewed	missense	c.5804	p.N1935S	0.996	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SNORD3A	0	genome.wustl.edu	37	17	19091429	19091429	+	RNA	SNP	C	C	G	rs78767039	byFrequency	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	19091429	19091429	C	G	SNP	SNORD3A	NR_006880.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.512	-	-	-	no_errors
SPDYE4	0	genome.wustl.edu	37	17	8660619	8660619	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	8660619	8660619	C	T	SNP	SPDYE4	NM_001128076.1	human	genbank	58_37c	-1	provisional	missense	c.301	p.V101M	0.001	NULL	NULL	-	no_errors
STAB2	0	genome.wustl.edu	37	12	104100711	104100711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	104100711	104100711	G	A	SNP	STAB2	NM_017564.9	human	genbank	58_37c	+1	reviewed	missense	c.4138	p.G1380S	0.999	HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2	HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_EGF_alliinase,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type_lectin_fold,superfamily_SSF57196	-	no_errors
TMEM184A	0	genome.wustl.edu	37	7	1586653	1586654	+	In_Frame_Ins	INS	-	-	GCC	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	1586653	1586654	-	GCC	INS	TMEM184A	NM_001097620.1	human	genbank	58_37c	-1	validated	in_frame_ins	c.1177_1176	p.392in_frame_insG	0.000:0.000	NULL	HMMPfam_DUF300	-	no_errors
TMTC2	0	genome.wustl.edu	37	12	83444707	83444707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	83444707	83444707	G	A	SNP	TMTC2	NM_152588.1	human	genbank	58_37c	+1	provisional	missense	c.2177	p.R726H	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMPfam_DUF1736,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TP53	0	genome.wustl.edu	37	17	7579360	7579361	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	7579360	7579361	-	AA	INS	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.327_326	p.R110fs	0.864:0.980	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRPS1	0	genome.wustl.edu	37	8	116616565	116616565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	8	116616565	116616565	C	T	SNP	TRPS1	NM_014112.2	human	genbank	58_37c	-1	reviewed	missense	c.1631	p.R544Q	1.000	HMMSmart_ZnF_C2H2	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57716	-	no_errors
VCL	0	genome.wustl.edu	37	10	75834570	75834570	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	10	75834570	75834570	A	G	SNP	VCL	NM_014000.2	human	genbank	58_37c	+1	reviewed	missense	c.692	p.N231S	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	PatternScan_VINCULIN_1,PatternScan_VINCULIN_2,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
VN1R4	0	genome.wustl.edu	37	19	53770069	53770069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	53770069	53770069	C	T	SNP	VN1R4	NM_173857.2	human	genbank	58_37c	-1	validated	missense	c.850	p.V284I	0.000	HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like	-	no_errors
