Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA3	0	genome.wustl.edu	37	16	2345722	2345722	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	16	2345722	2345722	C	T	SNP	ABCA3	NM_001089.2	human	genbank	58_37c	-1	reviewed	silent	c.2283	p.T761	0.121	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CRB1	0	genome.wustl.edu	37	1	197390446	197390446	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	197390446	197390446	C	A	SNP	CRB1	NM_201253.1	human	genbank	58_37c	+1	reviewed	silent	c.1488	p.V496	0.003	superfamily_Concanavalin A-like lectins/glucanases	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin	-	no_errors
CROCC	0	genome.wustl.edu	37	1	17273292	17273292	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	17273292	17273292	C	T	SNP	CROCC	NM_014675.3	human	genbank	58_37c	+1	validated	missense	c.2320	p.R774W	1.000	NULL	superfamily_Prefoldin	-	no_errors
ENSG00000231520	0	genome.wustl.edu	37	10	42380243	42380243	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	10	42380243	42380243	C	G	SNP	ENSG00000231520	ENST00000429113	human	ensembl	58_37c	-1	known	missense	c.19	p.E7Q	0.000	NULL	NULL	-	no_stop_codon
ENSG00000232657	0	genome.wustl.edu	37	4	49110484	49110484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	4	49110484	49110484	C	T	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.18	p.M6I	0.000	NULL	NULL	-	no_stop_codon
ENSG00000234603	0	genome.wustl.edu	37	2	7170389	7170396	+	Frame_Shift_Del	DEL	TGTGTGTG	TGTGTGTG	-	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	TGTGTGTG	TGTGTGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	2	7170389	7170396	TGTGTGTG	-	DEL	ENSG00000234603	ENST00000441133	human	ensembl	58_37c	+1	known	frame_shift_del	c.68_75	p.C26fs	0.000:0.000:0.000:0.000:0.000:0.006:0.000:0.001	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
FCGBP	0	genome.wustl.edu	37	19	40383905	40383905	+	Silent	SNP	G	G	A	rs145218790	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	19	40383905	40383905	G	A	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	silent	c.9705	p.C3235	0.488	NULL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
GOLGB1	0	genome.wustl.edu	37	3	121416508	121416508	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	121416508	121416508	C	T	SNP	GOLGB1	ENST00000489400	human	ensembl	58_37c	-1	known	nonsense	c.2459	p.W820*	0.000	superfamily_Spectrin repeat	superfamily_Spectrin repeat	-	no_start_codon:pseudogene:no_stop_codon
HNF1A	0	genome.wustl.edu	37	12	121434630	121434631	+	Frame_Shift_Ins	INS	-	-	TCATTCAT	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	12	121434630	121434631	-	TCATTCAT	INS	HNF1A	ENST00000344370	human	ensembl	58_37c	+1	known	frame_shift_ins	c.1394_1395	p.F469fs	0.006:0.017	HMMPfam_HNF-1B_C	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_HNF-1B_C,HMMPfam_HNF-1A_C,HMMPfam_HNF-1_N,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1,superfamily_Dimerization cofactor of HNF-1 alpha	-	no_errors
LOC100129585	0	genome.wustl.edu	37	X	65176150	65176150	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	X	65176150	65176150	C	A	SNP	LOC100129585	XM_001721365.2	human	genbank	58_37c	-1	model	nonsense	c.247	p.E83*	1.000	NULL	NULL	-	no_errors
LOC100287012	0	genome.wustl.edu	37	19	44008076	44008076	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	19	44008076	44008076	A	G	SNP	LOC100287012	XM_002343684.1	human	genbank	58_37c	+1	model	missense	c.406	p.S136G	0.308	NULL	NULL	-	no_errors
LOC100288109	0	genome.wustl.edu	37	9	66458276	66458276	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	9	66458276	66458276	C	T	SNP	LOC100288109	XM_002342922.1	human	genbank	58_37c	-1	model	missense	c.358	p.A120T	0.047	NULL	NULL	-	no_errors
MARCKSL1	0	genome.wustl.edu	37	1	32800612	32800612	+	Silent	SNP	G	G	A	rs142561179	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	32800612	32800612	G	A	SNP	MARCKSL1	NM_023009.5	human	genbank	58_37c	-1	validated	silent	c.174	p.A58	0.457	NULL	HMMPfam_MARCKS,PatternScan_MARCKS_1,PatternScan_MARCKS_2	-	no_errors
MBNL2	0	genome.wustl.edu	37	13	97999169	97999169	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	13	97999169	97999169	T	A	SNP	MBNL2	NM_144778.2	human	genbank	58_37c	+1	reviewed	missense	c.652	p.C218S	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
MRE11A	0	genome.wustl.edu	37	11	94209462	94209462	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	11	94209462	94209462	G	T	SNP	MRE11A	NM_005591.3	human	genbank	58_37c	-1	reviewed	missense	c.652	p.Q218K	1.000	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases	HMMPfam_Metallophos,HMMPfam_Mre11_DNA_bind,superfamily_Metallo-dependent phosphatases	-	no_errors
MT-CYB	0	genome.wustl.edu	37	MT	15374	15374	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	MT	15374	15374	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	nonsense	c.628	p.G210*	NULL	superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
NTHL1	0	genome.wustl.edu	37	16	2093638	2093638	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	16	2093638	2093638	C	T	SNP	NTHL1	NM_002528.5	human	genbank	58_37c	-1	reviewed	silent	c.639	p.A213	0.191	HMMPfam_HHH,HMMPfam_HhH-GPD,HMMSmart_ENDO3c,PatternScan_ENDONUCLEASE_III_2,superfamily_DNA_glycsylse	HMMPfam_HHH,HMMPfam_HhH-GPD,HMMSmart_ENDO3c,HMMSmart_FES,PatternScan_ENDONUCLEASE_III_1,PatternScan_ENDONUCLEASE_III_2,superfamily_DNA_glycsylse	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3R1	0	genome.wustl.edu	37	5	67590467	67590467	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	5	67590467	67590467	A	T	SNP	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	missense	c.1529	p.E510V	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PLD5	0	genome.wustl.edu	37	1	242383361	242383361	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	242383361	242383361	A	G	SNP	PLD5	NM_152666.1	human	genbank	58_37c	-1	provisional	missense	c.388	p.S130P	1.000	HMMPfam_PLDc,HMMSmart_PLDc,superfamily_SSF56024	HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024	-	no_errors
PLK3	0	genome.wustl.edu	37	1	45270401	45270401	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	45270401	45270401	C	A	SNP	PLK3	NM_004073.2	human	genbank	58_37c	+1	validated	missense	c.1585	p.L529M	1.000	HMMPfam_POLO_box,superfamily_Polo-box domain	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_POLO_box,superfamily_Polo-box domain	-	no_errors
SDHAP3	0	genome.wustl.edu	37	5	1572275	1572275	+	RNA	SNP	A	A	G	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	5	1572275	1572275	A	G	SNP	SDHAP3	NR_003263.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.008	-	-	-	pseudogene
SLC25A36	0	genome.wustl.edu	37	3	140675496	140675496	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	140675496	140675496	A	G	SNP	SLC25A36	NM_001104647.1	human	genbank	58_37c	+1	validated	missense	c.169	p.N57D	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
SLC35B2	0	genome.wustl.edu	37	6	44224110	44224110	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	6	44224110	44224110	A	T	SNP	SLC35B2	NM_178148.2	human	genbank	58_37c	-1	validated	missense	c.329	p.L110Q	1.000	NULL	PatternScan_COPPER_BLUE,HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
SNTG2	0	genome.wustl.edu	37	2	1094038	1094038	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	2	1094038	1094038	G	T	SNP	SNTG2	NM_018968.3	human	genbank	58_37c	+1	reviewed	splice_site	c.268-1	e4-1	1.000	-	-	-	no_errors
TRIM2	0	genome.wustl.edu	37	4	154191510	154191510	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	4	154191510	154191510	A	G	SNP	TRIM2	NM_015271.3	human	genbank	58_37c	+1	validated	silent	c.54	p.T18	0.998	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_NHL,HMMSmart_SM00557,HMMSmart_SM00184,HMMSmart_SM00502,superfamily_E set domains,HMMPfam_Filamin,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_NHL repeat,superfamily_RING/U-box	-	no_errors
TTC6	0	genome.wustl.edu	37	14	38277943	38277943	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	14	38277943	38277943	T	C	SNP	TTC6	ENST00000478811	human	ensembl	58_37c	+1	known	missense	c.1307	p.I436T	0.989	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_Protein prenylyltransferase,superfamily_TPR-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
UBXN11	0	genome.wustl.edu	37	1	26608885	26608885	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	26608885	26608885	C	T	SNP	UBXN11	NM_183008.2	human	genbank	58_37c	-1	reviewed	missense	c.1468	p.G490S	0.000	NULL	HMMPfam_UBX,HMMPfam_SEP,superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain,superfamily_Ubiquitin-like	-	no_errors
UBXN11	0	genome.wustl.edu	37	1	26608889	26608889	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	26608889	26608889	A	T	SNP	UBXN11	NM_183008.2	human	genbank	58_37c	-1	reviewed	silent	c.1464	p.G488	0.001	NULL	HMMPfam_UBX,HMMPfam_SEP,superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain,superfamily_Ubiquitin-like	-	no_errors
UTP3	0	genome.wustl.edu	37	4	71555017	71555017	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	4	71555017	71555017	C	T	SNP	UTP3	NM_020368.2	human	genbank	58_37c	+1	validated	missense	c.623	p.A208V	0.746	NULL	HMMPfam_Sas10_Utp3,HMMPfam_Sas10_Utp3_C	-	no_errors
ZNF622	0	genome.wustl.edu	37	5	16463793	16463793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	5	16463793	16463793	G	A	SNP	ZNF622	NM_033414.2	human	genbank	58_37c	-1	provisional	silent	c.684	p.D228	0.000	NULL	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2	-	no_errors
