Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
APPL2	0	genome.wustl.edu	37	12	105605050	105605050	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	12	105605050	105605050	T	C	SNP	APPL2	NM_018171.3	human	genbank	58_37c	-1	validated	missense	c.331	p.M111V	0.996	NULL	HMMPfam_PH,HMMSmart_PH,HMMPfam_PID,superfamily_SSF50729	-	no_errors
CHD6	0	genome.wustl.edu	37	20	40065975	40065975	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	20	40065975	40065975	C	G	SNP	CHD6	NM_032221.3	human	genbank	58_37c	-1	reviewed	splice_site	c.4008-1	e26-1	1.000	-	-	-	no_errors
DOCK10	0	genome.wustl.edu	37	2	225661753	225661753	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	2	225661753	225661753	G	C	SNP	DOCK10	ENST00000409802	human	ensembl	58_37c	-1	known	missense	c.931	p.P311A	0.930	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
EFNB2	0	genome.wustl.edu	37	13	107145608	107145608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	13	107145608	107145608	G	A	SNP	EFNB2	NM_004093.2	human	genbank	58_37c	-1	reviewed	missense	c.782	p.P261L	1.000	NULL	HMMPfam_Ephrin,superfamily_Cupredoxin,PatternScan_EPHRIN	-	no_errors
ENSG00000232657	0	genome.wustl.edu	37	4	49110480	49110480	+	Missense_Mutation	SNP	A	A	T	rs139914309	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	4	49110480	49110480	A	T	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.22	p.W8R	0.000	NULL	NULL	-	no_stop_codon
ENSG00000249695	0	genome.wustl.edu	37	12	250257	250257	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	12	250257	250257	C	T	SNP	ENSG00000249695	ENST00000505893	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.592	-	-	-	no_errors
FGF18	0	genome.wustl.edu	37	5	170883788	170883788	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	5	170883788	170883788	C	A	SNP	FGF18	NM_003862.1	human	genbank	58_37c	+1	reviewed	silent	c.603	p.I201	1.000	NULL	HMMPfam_FGF,HMMSmart_FGF,PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like	-	no_errors
FOXA1	0	genome.wustl.edu	37	14	38061463	38061463	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	14	38061463	38061463	T	C	SNP	FOXA1	NM_004496.2	human	genbank	58_37c	-1	reviewed	missense	c.526	p.I176V	1.000	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,superfamily_SSF46785	HMMPfam_Fork_head,HMMSmart_FH,HMMPfam_Fork_head_N,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C,superfamily_SSF46785	-	no_errors
KCNQ3	0	genome.wustl.edu	37	8	133142164	133142164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	8	133142164	133142164	G	A	SNP	KCNQ3	NM_004519.2	human	genbank	58_37c	-1	reviewed	missense	c.1964	p.T655M	0.009	HMMPfam_KCNQ_channel	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_SSF81324	-	no_errors
KRTAP4-5	0	genome.wustl.edu	37	17	39305800	39305814	+	In_Frame_Del	DEL	TGGATTCACAGCAAT	TGGATTCACAGCAAT	-	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	TGGATTCACAGCAAT	TGGATTCACAGCAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	17	39305800	39305814	TGGATTCACAGCAAT	-	DEL	KRTAP4-5	NM_033188.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.220_206	p.YCCESS69in_frame_delC	0.689:0.524:0.472:0.042:0.004:0.003:0.006:0.126:0.849:0.943:0.982:0.981:0.896:0.000:0.000	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	-	no_errors
LOC100129309	0	genome.wustl.edu	37	5	179366952	179366953	+	RNA	INS	-	-	T	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	5	179366952	179366953	-	T	INS	LOC100129309	XR_078329.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.009:0.001	-	-	-	pseudogene
LOC283685	0	genome.wustl.edu	37	15	23685225	23685226	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	15	23685225	23685226	-	G	INS	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	frame_shift_ins	c.1952_1951	p.Q651fs	0.059:0.043	NULL	NULL	-	no_errors
LOC729501	0	genome.wustl.edu	37	13	19042415	19042415	+	Missense_Mutation	SNP	C	C	T	rs62213075	byFrequency	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	13	19042415	19042415	C	T	SNP	LOC729501	XM_002343229.1	human	genbank	58_37c	-1	model	missense	c.1667	p.R556H	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	pseudogene
NBPF10	0	genome.wustl.edu	37	1	145323656	145323656	+	Missense_Mutation	SNP	A	A	T	rs75252120	byFrequency	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	1	145323656	145323656	A	T	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.3718	p.I1240F	0.007	NULL	HMMPfam_DUF1220	-	no_errors
NHS	0	genome.wustl.edu	37	X	17705913	17705913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	X	17705913	17705913	C	T	SNP	NHS	NM_198270.2	human	genbank	58_37c	+1	reviewed	missense	c.617	p.P206L	0.904	NULL	NULL	-	no_errors
PCYT1A	0	genome.wustl.edu	37	3	195968901	195968901	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	3	195968901	195968901	A	C	SNP	PCYT1A	NM_005017.2	human	genbank	58_37c	-1	provisional	missense	c.626	p.I209S	1.000	superfamily_SSF52374	HMMPfam_CTP_transf_2,superfamily_SSF52374	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	byCluster	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKHD1L1	0	genome.wustl.edu	37	8	110454342	110454342	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	8	110454342	110454342	T	C	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	silent	c.4311	p.Y1437	0.842	superfamily_Cupredoxins	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
POM121L9P	0	genome.wustl.edu	37	22	24659770	24659770	+	RNA	SNP	T	T	C	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	22	24659770	24659770	T	C	SNP	POM121L9P	NR_003714.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.051	-	-	-	pseudogene
RBM5	0	genome.wustl.edu	37	3	50155888	50155889	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	3	50155888	50155889	GA	-	DEL	RBM5	NM_005778.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.2447_2448	p.*816fs	1.000:0.999	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_RNA-binding domain RBD	-	no_errors
SENP1	0	genome.wustl.edu	37	12	48482684	48482684	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	12	48482684	48482684	C	T	SNP	SENP1	NM_014554.2	human	genbank	58_37c	-1	validated	missense	c.280	p.A94T	1.000	NULL	HMMPfam_Peptidase_C48,superfamily_SSF54001	-	no_errors
SLC30A10	0	genome.wustl.edu	37	1	220091665	220091665	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	1	220091665	220091665	G	A	SNP	SLC30A10	NM_018713.2	human	genbank	58_37c	-1	validated	missense	c.890	p.P297L	1.000	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
TUBGCP3	0	genome.wustl.edu	37	13	113212589	113212589	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	13	113212589	113212589	C	T	SNP	TUBGCP3	NM_006322.4	human	genbank	58_37c	-1	provisional	missense	c.469	p.V157M	0.021	NULL	HMMPfam_Spc97_Spc98	-	no_errors
ZNF75A	0	genome.wustl.edu	37	16	3363109	3363109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	16	3363109	3363109	G	A	SNP	ZNF75A	NM_153028.2	human	genbank	58_37c	+1	validated	missense	c.34	p.D12N	0.981	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
