Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA1	0	genome.wustl.edu	37	9	107558476	107558476	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	107558476	107558476	C	A	SNP	ABCA1	NM_005502.2	human	genbank	58_37c	-1	reviewed	missense	c.5240	p.W1747L	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCB8	0	genome.wustl.edu	37	7	150739114	150739114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	150739114	150739114	G	A	SNP	ABCB8	NM_007188.3	human	genbank	58_37c	+1	reviewed	missense	c.1684	p.E562K	1.000	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ABLIM1	0	genome.wustl.edu	37	10	116199016	116199016	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	116199016	116199016	C	T	SNP	ABLIM1	ENST00000369267	human	ensembl	58_37c	-1	known	splice_site	c.1968+2	e21+2	1.000	-	-	-	no_errors
ACTG1	0	genome.wustl.edu	37	17	79478494	79478526	+	In_Frame_Del	DEL	GGCGTGGGGGAGGGCGTAGCCCTCGTAGATGGG	GGCGTGGGGGAGGGCGTAGCCCTCGTAGATGGG	-	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	GGCGTGGGGGAGGGCGTAGCCCTCGTAGATGGG	GGCGTGGGGGAGGGCGTAGCCCTCGTAGATGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	79478494	79478526	GGCGTGGGGGAGGGCGTAGCCCTCGTAGATGGG	-	DEL	ACTG1	NM_001614.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.522_490	p.PIYEGYALPHA164in_frame_del	1.000:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.987:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
ADAM9	0	genome.wustl.edu	37	8	38899492	38899492	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	38899492	38899492	T	A	SNP	ADAM9	NM_003816.2	human	genbank	58_37c	+1	reviewed	missense	c.1158	p.S386R	1.000	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AHCTF1	0	genome.wustl.edu	37	1	247024360	247024360	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	247024360	247024360	G	C	SNP	AHCTF1	NM_015446.4	human	genbank	58_37c	-1	validated	missense	c.3973	p.P1325A	0.104	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
AREG	0	genome.wustl.edu	37	4	75311103	75311103	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	75311103	75311103	C	G	SNP	AREG	NM_001657.2	human	genbank	58_37c	+1	reviewed	missense	c.41	p.S14W	0.223	NULL	HMMPfam_EGF,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
ATP2C1	0	genome.wustl.edu	37	3	130686035	130686035	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	130686035	130686035	G	C	SNP	ATP2C1	NM_001001486.1	human	genbank	58_37c	+1	reviewed	missense	c.1169	p.G390A	1.000	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
ATP2C2	0	genome.wustl.edu	37	16	84488552	84488552	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	84488552	84488552	C	A	SNP	ATP2C2	NM_014861.2	human	genbank	58_37c	+1	validated	silent	c.2109	p.A703	1.000	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BARHL2	0	genome.wustl.edu	37	1	91180220	91180220	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	91180220	91180220	G	T	SNP	BARHL2	NM_020063.1	human	genbank	58_37c	-1	validated	missense	c.719	p.S240Y	0.998	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
BCL2L2	0	genome.wustl.edu	37	14	23778024	23778024	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	23778024	23778024	G	A	SNP	BCL2L2	NM_004050.3	human	genbank	58_37c	+1	reviewed	splice_site	c.433-1	e2-1	1.000	-	-	-	no_errors
BRSK2	0	genome.wustl.edu	37	11	1463799	1463799	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	1463799	1463799	C	A	SNP	BRSK2	NM_003957.2	human	genbank	58_37c	+1	validated	missense	c.493	p.L165M	0.998	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
BTD	0	genome.wustl.edu	37	3	15677076	15677076	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	15677076	15677076	G	A	SNP	BTD	NM_000060.2	human	genbank	58_37c	+1	reviewed	missense	c.190	p.E64K	1.000	superfamily_Carbon-nitrogen hydrolase	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase	-	no_errors
C17orf42	0	genome.wustl.edu	37	17	29226268	29226268	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	29226268	29226268	T	C	SNP	C17orf42	NM_024683.3	human	genbank	58_37c	-1	validated	silent	c.1002	p.L334	0.000	superfamily_Ribonuclease H-like	superfamily_Ribonuclease H-like	-	no_errors
C1orf112	0	genome.wustl.edu	37	1	169798585	169798585	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	169798585	169798585	G	A	SNP	C1orf112	NM_018186.2	human	genbank	58_37c	+1	predicted	missense	c.1309	p.E437K	1.000	NULL	NULL	-	no_errors
C20orf70	0	genome.wustl.edu	37	20	31765968	31765968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	31765968	31765968	C	T	SNP	C20orf70	NM_080574.2	human	genbank	58_37c	+1	validated	silent	c.579	p.I193	0.006	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors
C2orf42	0	genome.wustl.edu	37	2	70408913	70408913	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	70408913	70408913	C	G	SNP	C2orf42	NM_017880.1	human	genbank	58_37c	-1	predicted	missense	c.205	p.G69R	1.000	NULL	PatternScan_THIOL_PROTEASE_CYS	-	no_errors
C4orf50	0	genome.wustl.edu	37	4	5961272	5961274	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	5961272	5961274	GTT	-	DEL	C4orf50	NM_207405.1	human	genbank	58_37c	-1	predicted	in_frame_del	c.661_659	p.Q220in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
C5orf34	0	genome.wustl.edu	37	5	43505873	43505873	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	5	43505873	43505873	G	A	SNP	C5orf34	NM_198566.1	human	genbank	58_37c	-1	predicted	missense	c.908	p.A303V	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CACNA1A	0	genome.wustl.edu	37	19	13397499	13397499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	13397499	13397499	G	A	SNP	CACNA1A	NM_001127222.1	human	genbank	58_37c	-1	reviewed	missense	c.3371	p.T1124M	0.002	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CACNA1A	0	genome.wustl.edu	37	19	13476202	13476202	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	13476202	13476202	A	C	SNP	CACNA1A	NM_001127222.1	human	genbank	58_37c	-1	reviewed	missense	c.713	p.L238R	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CACNA2D4	0	genome.wustl.edu	37	12	2024051	2024051	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	12	2024051	2024051	G	T	SNP	CACNA2D4	NM_172364.4	human	genbank	58_37c	-1	reviewed	missense	c.278	p.T93N	0.984	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,superfamily_vWA-like	-	no_errors
CASP8	0	genome.wustl.edu	37	2	202149565	202149565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	202149565	202149565	C	T	SNP	CASP8	NM_001080125.1	human	genbank	58_37c	+1	reviewed	missense	c.1006	p.L336F	0.994	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CASP8AP2	0	genome.wustl.edu	37	6	90566882	90566882	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	90566882	90566882	A	C	SNP	CASP8AP2	NM_001137667.1	human	genbank	58_37c	+1	reviewed	missense	c.380	p.N127T	1.000	NULL	superfamily_Homeodomain-like	-	no_stop_codon:bad_bp_length_for_coding_region
CD226	0	genome.wustl.edu	37	18	67613972	67613972	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	18	67613972	67613972	G	C	SNP	CD226	NM_006566.2	human	genbank	58_37c	-1	reviewed	nonsense	c.380	p.S127*	0.947	HMMPfam_V-set	HMMSmart_IGc2,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
CDS2	0	genome.wustl.edu	37	20	5163085	5163085	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	5163085	5163085	C	G	SNP	CDS2	NM_003818.2	human	genbank	58_37c	+1	reviewed	missense	c.582	p.F194L	1.000	HMMPfam_CTP_transf_1	HMMPfam_CTP_transf_1,PatternScan_CDS	-	no_errors
CFH	0	genome.wustl.edu	37	1	196684806	196684806	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	196684806	196684806	G	T	SNP	CFH	NM_000186.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1603	p.E535*	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
CHD6	0	genome.wustl.edu	37	20	40043952	40043952	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	40043952	40043952	C	T	SNP	CHD6	NM_032221.3	human	genbank	58_37c	-1	reviewed	silent	c.6813	p.Q2271	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CNTNAP4	0	genome.wustl.edu	37	16	76482725	76482725	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	76482725	76482725	T	G	SNP	CNTNAP4	NM_138994.3	human	genbank	58_37c	+1	validated	missense	c.729	p.D243E	1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
CNTNAP4	0	genome.wustl.edu	37	16	76555164	76555164	+	Nonstop_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	76555164	76555164	A	G	SNP	CNTNAP4	NM_033401.3	human	genbank	58_37c	+1	reviewed	nonstop	c.2492	p.*831W	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
COL6A5	0	genome.wustl.edu	37	3	130110337	130110337	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	130110337	130110337	G	A	SNP	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	missense	c.2732	p.R911H	0.999	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
CSMD1	0	genome.wustl.edu	37	8	2813173	2813173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	2813173	2813173	C	T	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	missense	c.9935	p.G3312E	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
CSMD3	0	genome.wustl.edu	37	8	113326154	113326154	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	113326154	113326154	G	T	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	silent	c.7677	p.G2559	0.837	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
CXCR7	0	genome.wustl.edu	37	2	237489606	237489606	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	237489606	237489606	C	T	SNP	CXCR7	NM_020311.2	human	genbank	58_37c	+1	reviewed	silent	c.498	p.I166	0.053	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CXorf40A	0	genome.wustl.edu	37	X	148627223	148627223	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	148627223	148627223	T	A	SNP	CXorf40A	NM_178124.4	human	genbank	58_37c	+1	validated	missense	c.47	p.V16D	0.019	NULL	NULL	-	no_errors
DLGAP2	0	genome.wustl.edu	37	8	1581131	1581131	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	1581131	1581131	C	A	SNP	DLGAP2	NM_004745.3	human	genbank	58_37c	+1	reviewed	missense	c.1489	p.Q497K	1.000	NULL	HMMPfam_GKAP	-	no_errors
DNAH7	0	genome.wustl.edu	37	2	196837175	196837175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	196837175	196837175	C	T	SNP	DNAH7	NM_018897.2	human	genbank	58_37c	-1	validated	missense	c.1849	p.V617M	1.000	NULL	PatternScan_ADH_SHORT,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,PatternScan_EF_HAND_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAJC16	0	genome.wustl.edu	37	1	15892576	15892576	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	15892576	15892576	G	T	SNP	DNAJC16	NM_015291.2	human	genbank	58_37c	+1	provisional	splice_site	c.1680-1	e12-1	1.000	-	-	-	no_errors
DOK2	0	genome.wustl.edu	37	8	21767238	21767238	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	21767238	21767238	G	A	SNP	DOK2	NM_003974.2	human	genbank	58_37c	-1	reviewed	missense	c.823	p.H275Y	0.998	NULL	HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729	-	no_errors
DQX1	0	genome.wustl.edu	37	2	74750598	74750598	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	74750598	74750598	G	T	SNP	DQX1	NM_133637.2	human	genbank	58_37c	-1	validated	missense	c.883	p.P295T	0.012	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EFS	0	genome.wustl.edu	37	14	23829243	23829243	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	23829243	23829243	G	A	SNP	EFS	NM_005864.2	human	genbank	58_37c	-1	reviewed	silent	c.444	p.Y148	0.985	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
EIF2B5	0	genome.wustl.edu	37	3	183857942	183857942	+	Silent	SNP	G	G	A	rs138820746	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	183857942	183857942	G	A	SNP	EIF2B5	NM_003907.2	human	genbank	58_37c	+1	reviewed	silent	c.840	p.E280	1.000	superfamily_SSF53448	HMMPfam_Hexapep,HMMPfam_W2,HMMSmart_eIF5C,superfamily_Trimer_LpxA_like,superfamily_ARM-type_fold,superfamily_SSF53448	-	no_errors
ELL2	0	genome.wustl.edu	37	5	95234001	95234001	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	5	95234001	95234001	G	T	SNP	ELL2	NM_012081.5	human	genbank	58_37c	-1	validated	missense	c.1468	p.L490I	0.999	NULL	HMMPfam_Occludin_ELL,HMMPfam_ELL	-	no_errors
ENPP7	0	genome.wustl.edu	37	17	77708865	77708865	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	77708865	77708865	C	T	SNP	ENPP7	NM_178543.3	human	genbank	58_37c	+1	validated	silent	c.423	p.F141	1.000	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core	-	no_errors
ENSG00000198899	0	genome.wustl.edu	37	MT	9119	9119	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	MT	9119	9119	T	C	SNP	ENSG00000198899	ENST00000361899	human	ensembl	58_37c	+1	known	missense	c.593	p.L198P	NULL	HMMPfam_ATP-synt_A,superfamily_F1F0 ATP synthase subunit A	HMMPfam_ATP-synt_A,PatternScan_ATPASE_A,superfamily_F1F0 ATP synthase subunit A	-	mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2113	2113	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	MT	2113	2113	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000226518	0	genome.wustl.edu	37	14	20087717	20087731	+	In_Frame_Del	DEL	AAGCTGGGGCTTCCA	AAGCTGGGGCTTCCA	-	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	AAGCTGGGGCTTCCA	AAGCTGGGGCTTCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	20087717	20087731	AAGCTGGGGCTTCCA	-	DEL	ENSG00000226518	ENST00000422907	human	ensembl	58_37c	+1	known	in_frame_del	c.287_301	p.ASKAG99in_frame_del	1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	-	no_stop_codon
EPHA3	0	genome.wustl.edu	37	3	89390198	89390198	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	89390198	89390198	A	T	SNP	EPHA3	NM_005233.5	human	genbank	58_37c	+1	reviewed	missense	c.947	p.D316V	1.000	NULL	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),HMMPfam_SAM_2,PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
EPHB2	0	genome.wustl.edu	37	1	23237037	23237037	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	23237037	23237037	A	G	SNP	EPHB2	NM_004442.6	human	genbank	58_37c	+1	reviewed	missense	c.2668	p.S890G	1.000	superfamily_Kinase_like	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Gal_bind_like,superfamily_SAM_homology,superfamily_Kinase_like,PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
EXPH5	0	genome.wustl.edu	37	11	108380564	108380564	+	Silent	SNP	C	C	A	rs147293762	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	108380564	108380564	C	A	SNP	EXPH5	NM_015065.2	human	genbank	58_37c	-1	validated	silent	c.5670	p.G1890	1.000	NULL	NULL	-	no_errors
EYA1	0	genome.wustl.edu	37	8	72246543	72246543	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	72246543	72246543	A	T	SNP	EYA1	ENST00000388744	human	ensembl	58_37c	-1	known	missense	c.8	p.M3K	0.000	NULL	HMMPfam_Hydrolase	-	no_errors
FAT3	0	genome.wustl.edu	37	11	92577403	92577403	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	92577403	92577403	G	T	SNP	FAT3	NM_001008781.2	human	genbank	58_37c	+1	validated	missense	c.10870	p.D3624Y	1.000	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FBLN2	0	genome.wustl.edu	37	3	13669464	13669464	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	13669464	13669464	G	C	SNP	FBLN2	NM_001004019.1	human	genbank	58_37c	+1	reviewed	missense	c.2564	p.C855S	1.000	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FBN1	0	genome.wustl.edu	37	15	48736765	48736765	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	48736765	48736765	A	G	SNP	FBN1	NM_000138.4	human	genbank	58_37c	-1	reviewed	missense	c.6010	p.Y2004H	1.000	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FBXW10	0	genome.wustl.edu	37	17	18681814	18681814	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	18681814	18681814	C	G	SNP	FBXW10	NM_031456.3	human	genbank	58_37c	+1	validated	missense	c.2359	p.Q787E	0.000	NULL	HMMSmart_SM00320,HMMPfam_F-box,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
FER1L5	0	genome.wustl.edu	37	2	97368946	97368946	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	97368946	97368946	T	G	SNP	FER1L5	NM_001113382.1	human	genbank	58_37c	+1	provisional	missense	c.5662	p.C1888G	0.998	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
FLG	0	genome.wustl.edu	37	1	152279942	152279942	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	152279942	152279942	G	C	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	missense	c.7420	p.Q2474E	0.001	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
GABRG3	0	genome.wustl.edu	37	15	27725885	27725885	+	Missense_Mutation	SNP	G	G	C	rs79486115	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	27725885	27725885	G	C	SNP	GABRG3	NM_033223.4	human	genbank	58_37c	+1	validated	missense	c.664	p.D222H	1.000	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GALNTL4	0	genome.wustl.edu	37	11	11454295	11454295	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	11454295	11454295	C	G	SNP	GALNTL4	NM_198516.2	human	genbank	58_37c	-1	validated	silent	c.468	p.V156	1.000	superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GLRX3	0	genome.wustl.edu	37	10	131964903	131964903	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	131964903	131964903	A	G	SNP	GLRX3	NM_006541.3	human	genbank	58_37c	+1	provisional	missense	c.611	p.Y204C	1.000	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
GPR132	0	genome.wustl.edu	37	14	105517707	105517707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	105517707	105517707	G	A	SNP	GPR132	NM_013345.2	human	genbank	58_37c	-1	reviewed	missense	c.767	p.A256V	0.211	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GPR151	0	genome.wustl.edu	37	5	145894915	145894922	+	Frame_Shift_Del	DEL	GCTCAGCA	GCTCAGCA	-	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	GCTCAGCA	GCTCAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	5	145894915	145894922	GCTCAGCA	-	DEL	GPR151	NM_194251.2	human	genbank	58_37c	-1	provisional	frame_shift_del	c.762_755	p.L252fs	0.978:1.000:0.998:0.797:1.000:1.000:1.000:1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GPRC6A	0	genome.wustl.edu	37	6	117130674	117130674	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	117130674	117130674	C	G	SNP	GPRC6A	NM_148963.2	human	genbank	58_37c	-1	validated	missense	c.301	p.D101H	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_Periplasmic binding protein-like I	-	no_errors
HCN4	0	genome.wustl.edu	37	15	73615583	73615583	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	73615583	73615583	C	A	SNP	HCN4	NM_005477.2	human	genbank	58_37c	-1	reviewed	missense	c.2851	p.G951C	0.003	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
HIP1	0	genome.wustl.edu	37	7	75192287	75192287	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	75192287	75192287	C	T	SNP	HIP1	NM_005338.4	human	genbank	58_37c	-1	reviewed	silent	c.972	p.E324	1.000	NULL	HMMPfam_I_LWEQ,HMMSmart_SM00307,superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_ARM repeat,superfamily_I/LWEQ domain (Pfam 01608)	-	no_errors
KCNH1	0	genome.wustl.edu	37	1	210856854	210856854	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	210856854	210856854	C	T	SNP	KCNH1	NM_172362.2	human	genbank	58_37c	-1	reviewed	silent	c.2739	p.S913	0.000	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KDM4DL	0	genome.wustl.edu	37	11	94760221	94760221	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	94760221	94760221	G	A	SNP	KDM4DL	ENST00000450979	human	ensembl	58_37c	+1	known	silent	c.1500	p.L500	0.001	NULL	HMMSmart_JmjC,HMMPfam_JmjN,HMMPfam_JmjC	-	no_errors
KDM6A	0	genome.wustl.edu	37	X	44969495	44969495	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	44969495	44969495	G	C	SNP	KDM6A	NM_021140.2	human	genbank	58_37c	+1	reviewed	splice_site	c.4176+1	e28+1	1.000	-	-	-	no_errors
KERA	0	genome.wustl.edu	37	12	91449429	91449429	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	12	91449429	91449429	T	A	SNP	KERA	NM_007035.3	human	genbank	58_37c	-1	reviewed	missense	c.630	p.R210S	0.987	superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
KIAA1211	0	genome.wustl.edu	37	4	57182104	57182104	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	57182104	57182104	C	A	SNP	KIAA1211	NM_020722.1	human	genbank	58_37c	+1	validated	silent	c.2436	p.A812	0.118	NULL	NULL	-	no_errors
KIR3DL2	0	genome.wustl.edu	37	19	55377364	55377364	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	55377364	55377364	A	T	SNP	KIR3DL2	NM_006737.2	human	genbank	58_37c	+1	reviewed	missense	c.1105	p.N369Y	0.183	NULL	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
KLF17	0	genome.wustl.edu	37	1	44595381	44595381	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	44595381	44595381	C	G	SNP	KLF17	NM_173484.3	human	genbank	58_37c	+1	validated	silent	c.438	p.P146	0.007	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
LMX1B	0	genome.wustl.edu	37	9	129455805	129455805	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	129455805	129455805	C	A	SNP	LMX1B	NM_002316.3	human	genbank	58_37c	+1	reviewed	silent	c.675	p.V225	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LOC100132858	0	genome.wustl.edu	37	7	35442	35443	+	In_Frame_Ins	INS	-	-	TGCTGC	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	35442	35443	-	TGCTGC	INS	LOC100132858	XM_001715131.2	human	genbank	58_37c	-1	model	in_frame_ins	c.255_254	p.86in_frame_insQQ	0.128:0.044	NULL	NULL	-	no_errors
LOC100288659	0	genome.wustl.edu	37	8	94659217	94659217	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	94659217	94659217	C	T	SNP	LOC100288659	XR_078392.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.154	-	-	-	pseudogene
LOC100289289	0	genome.wustl.edu	37	15	62546460	62546461	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	62546460	62546461	-	CTC	INS	LOC100289289	XM_002343368.1	human	genbank	58_37c	-1	model	in_frame_ins	c.2320_2319	p.773in_frame_insE	0.998:0.999	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
LOC642103	0	genome.wustl.edu	37	7	24418	24418	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	24418	24418	A	G	SNP	LOC642103	XM_936233.4	human	genbank	58_37c	+1	model	missense	c.2426	p.D809G	0.116	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC729057	0	genome.wustl.edu	37	22	16123413	16123413	+	RNA	SNP	A	A	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	22	16123413	16123413	A	T	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC81691	0	genome.wustl.edu	37	16	20826304	20826304	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	20826304	20826304	C	T	SNP	LOC81691	NM_030941.2	human	genbank	58_37c	+1	validated	nonsense	c.307	p.Q103*	0.631	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T,superfamily_RNA-binding domain RBD	-	no_errors
LRP8	0	genome.wustl.edu	37	1	53723024	53723024	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	53723024	53723024	G	C	SNP	LRP8	NM_004631.3	human	genbank	58_37c	-1	reviewed	missense	c.2322	p.S774R	1.000	NULL	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LY9	0	genome.wustl.edu	37	1	160769623	160769623	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	160769623	160769623	A	C	SNP	LY9	NM_002348.2	human	genbank	58_37c	+1	validated	missense	c.205	p.I69L	0.004	HMMSmart_SM00409,superfamily_Immunoglobulin	PatternScan_AA_TRNA_LIGASE_I,HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
MAP1A	0	genome.wustl.edu	37	15	43818417	43818417	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	43818417	43818417	G	T	SNP	MAP1A	NM_002373.5	human	genbank	58_37c	+1	reviewed	missense	c.4746	p.E1582D	0.369	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAPK10	0	genome.wustl.edu	37	4	87022223	87022223	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	87022223	87022223	T	A	SNP	MAPK10	NM_138982.2	human	genbank	58_37c	-1	reviewed	missense	c.712	p.M238L	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
MBTPS1	0	genome.wustl.edu	37	16	84101990	84101990	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	16	84101990	84101990	T	A	SNP	MBTPS1	NM_003791.2	human	genbank	58_37c	-1	reviewed	silent	c.2025	p.V675	0.091	NULL	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53	-	no_errors
MED12	0	genome.wustl.edu	37	X	70356243	70356243	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	70356243	70356243	G	A	SNP	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	missense	c.5138	p.R1713Q	0.872	NULL	HMMPfam_Med12	-	no_errors
MED12L	0	genome.wustl.edu	37	3	150840683	150840683	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	150840683	150840683	T	A	SNP	MED12L	NM_053002.4	human	genbank	58_37c	+1	reviewed	silent	c.318	p.T106	0.951	HMMPfam_Med12	HMMPfam_Med12	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	CAGCAG	CAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1239	p.QQ415in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MFSD9	0	genome.wustl.edu	37	2	103335116	103335116	+	Silent	SNP	C	C	A	rs149539151	byFrequency	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	103335116	103335116	C	A	SNP	MFSD9	NM_032718.3	human	genbank	58_37c	-1	validated	silent	c.1188	p.T396	0.010	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
MIB2	0	genome.wustl.edu	37	1	1563469	1563497	+	Frame_Shift_Del	DEL	TCCTCACGGAGGTGCCAAACATCGATGTT	TCCTCACGGAGGTGCCAAACATCGATGTT	-	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	TCCTCACGGAGGTGCCAAACATCGATGTT	TCCTCACGGAGGTGCCAAACATCGATGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	1563469	1563497	TCCTCACGGAGGTGCCAAACATCGATGTT	-	DEL	MIB2	NM_080875.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.1925_1953	p.V642fs	1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.185:0.839:0.920:0.987:1.000:1.000:1.000:1.000:0.995:0.714:0.762:0.780:0.942:0.969:0.986:0.977:0.997:0.991:0.586:0.940:0.996:1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMSmart_SM00184,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_MIB_HERC2,superfamily_RING/U-box	-	no_errors
MIR320C2	0	genome.wustl.edu	37	18	21901679	21901679	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	18	21901679	21901679	G	C	SNP	MIR320C2	ENST00000390762	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.451	-	-	-	no_errors
MRAP2	0	genome.wustl.edu	37	6	84798939	84798939	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	84798939	84798939	C	T	SNP	MRAP2	NM_138409.2	human	genbank	58_37c	+1	validated	silent	c.357	p.Y119	1.000	NULL	NULL	-	no_errors
MRPS2	0	genome.wustl.edu	37	9	138395757	138395757	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	138395757	138395757	G	T	SNP	MRPS2	NM_016034.3	human	genbank	58_37c	+1	reviewed	silent	c.669	p.V223	1.000	HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2	HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_1,PatternScan_RIBOSOMAL_S2_2	-	no_errors
MUC2	0	genome.wustl.edu	37	11	1097877	1097877	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	1097877	1097877	G	T	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.6958	p.D2320Y	0.000	HMMPfam_C8	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MYH2	0	genome.wustl.edu	37	17	10424654	10424654	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	10424654	10424654	C	T	SNP	MYH2	NM_001100112.1	human	genbank	58_37c	-1	reviewed	silent	c.5769	p.V1923	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
MYO10	0	genome.wustl.edu	37	5	16681999	16681999	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	5	16681999	16681999	G	T	SNP	MYO10	NM_012334.2	human	genbank	58_37c	-1	validated	silent	c.4170	p.G1390	1.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
NBEA	0	genome.wustl.edu	37	13	36229093	36229093	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	13	36229093	36229093	A	T	SNP	NBEA	NM_015678.4	human	genbank	58_37c	+1	validated	missense	c.8074	p.I2692F	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
NCAPH	0	genome.wustl.edu	37	2	97025913	97025913	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	97025913	97025913	A	G	SNP	NCAPH	NM_015341.3	human	genbank	58_37c	+1	reviewed	missense	c.1390	p.K464E	1.000	HMMPfam_Barren	HMMPfam_Barren	-	no_errors
NDUFB5	0	genome.wustl.edu	37	3	179341750	179341750	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	179341750	179341750	A	G	SNP	NDUFB5	ENST00000482604	human	ensembl	58_37c	+1	known	missense	c.542	p.E181G	0.346	HMMPfam_NDUF_B5	HMMPfam_NDUF_B5	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NOL6	0	genome.wustl.edu	37	9	33466362	33466362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33466362	33466362	G	A	SNP	NOL6	NM_022917.4	human	genbank	58_37c	-1	reviewed	missense	c.2153	p.S718F	0.010	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
NOL6	0	genome.wustl.edu	37	9	33467129	33467129	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33467129	33467129	G	A	SNP	NOL6	NM_022917.4	human	genbank	58_37c	-1	reviewed	silent	c.1857	p.V619	1.000	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
NOL6	0	genome.wustl.edu	37	9	33467240	33467240	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33467240	33467240	G	A	SNP	NOL6	NM_022917.4	human	genbank	58_37c	-1	reviewed	silent	c.1746	p.F582	0.997	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
NOL6	0	genome.wustl.edu	37	9	33469038	33469038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33469038	33469038	G	A	SNP	NOL6	NM_022917.4	human	genbank	58_37c	-1	reviewed	missense	c.944	p.S315L	1.000	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
NOL6	0	genome.wustl.edu	37	9	33469547	33469547	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	33469547	33469547	G	C	SNP	NOL6	NM_022917.4	human	genbank	58_37c	-1	reviewed	missense	c.677	p.S226C	1.000	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
NOTCH2	0	genome.wustl.edu	37	1	120506414	120506414	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	120506414	120506414	C	A	SNP	NOTCH2	NM_024408.2	human	genbank	58_37c	-1	reviewed	missense	c.1698	p.L566F	1.000	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_NL,superfamily_Notch_region,HMMSmart_EGF_CA,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
OR13C9	0	genome.wustl.edu	37	9	107379682	107379682	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	107379682	107379682	A	C	SNP	OR13C9	NM_001001956.1	human	genbank	58_37c	-1	provisional	silent	c.804	p.L268	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
ORMDL1	0	genome.wustl.edu	37	2	190647150	190647150	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	190647150	190647150	G	C	SNP	ORMDL1	NM_001128150.1	human	genbank	58_37c	-1	validated	missense	c.172	p.L58V	0.999	HMMPfam_ORMDL	HMMPfam_ORMDL	-	no_errors
OSBPL3	0	genome.wustl.edu	37	7	24843951	24843951	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	24843951	24843951	G	C	SNP	OSBPL3	NM_015550.2	human	genbank	58_37c	-1	reviewed	missense	c.2550	p.H850Q	1.000	HMMPfam_Oxysterol_BP	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_SM00233,PatternScan_OSBP,superfamily_PH domain-like	-	no_errors
PABPC4L	0	genome.wustl.edu	37	4	135122010	135122010	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	135122010	135122010	G	C	SNP	PABPC4L	NM_001114734.1	human	genbank	58_37c	-1	validated	nonsense	c.165	p.Y55*	0.995	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
PAPPA2	0	genome.wustl.edu	37	1	176769269	176769269	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	176769269	176769269	G	C	SNP	PAPPA2	NM_020318.2	human	genbank	58_37c	+1	validated	splice_site	c.5202+1	e20+1	1.000	-	-	-	no_errors
PAXIP1	0	genome.wustl.edu	37	7	154754122	154754122	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	154754122	154754122	G	C	SNP	PAXIP1	NM_007349.3	human	genbank	58_37c	-1	reviewed	missense	c.2036	p.T679R	0.247	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	-	no_errors
PCDH15	0	genome.wustl.edu	37	10	55826581	55826581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	55826581	55826581	G	A	SNP	PCDH15	NM_001142763.1	human	genbank	58_37c	-1	reviewed	missense	c.2171	p.P724L	0.984	superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
PHF8	0	genome.wustl.edu	37	X	54020123	54020123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	54020123	54020123	C	T	SNP	PHF8	NM_015107.2	human	genbank	58_37c	-1	reviewed	missense	c.1537	p.A513T	0.998	NULL	HMMSmart_SM00249,HMMSmart_SM00558,superfamily_FYVE/PHD zinc finger,PatternScan_EGF_2,HMMPfam_JmjC,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Clavaminate synthase-like	-	no_errors
PHKA2	0	genome.wustl.edu	37	X	18961827	18961827	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	18961827	18961827	C	T	SNP	PHKA2	NM_000292.2	human	genbank	58_37c	-1	reviewed	splice_site	c.717+1	e7+1	1.000	-	-	-	no_errors
PKDREJ	0	genome.wustl.edu	37	22	46653339	46653339	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	22	46653339	46653339	C	A	SNP	PKDREJ	NM_006071.1	human	genbank	58_37c	-1	reviewed	missense	c.5881	p.A1961S	0.000	HMMPfam_PKD_channel	HMMSmart_SM00303,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors
PKP4	0	genome.wustl.edu	37	2	159526302	159526302	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	159526302	159526302	G	C	SNP	PKP4	NM_003628.3	human	genbank	58_37c	+1	reviewed	missense	c.2799	p.E933D	0.999	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
PLAUR	0	genome.wustl.edu	37	19	44169580	44169580	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	44169580	44169580	G	C	SNP	PLAUR	NM_002659.2	human	genbank	58_37c	-1	reviewed	missense	c.198	p.S66R	0.985	HMMPfam_UPAR_LY6,HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like	HMMPfam_UPAR_LY6,HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like	-	no_errors
PLCD4	0	genome.wustl.edu	37	2	219496970	219496970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	219496970	219496970	G	A	SNP	PLCD4	NM_032726.2	human	genbank	58_37c	+1	provisional	missense	c.1384	p.E462K	0.002	superfamily_PLC-like phosphodiesterases	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
PRAMEF1	0	genome.wustl.edu	37	1	12855745	12855745	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	12855745	12855745	C	G	SNP	PRAMEF1	NM_023013.1	human	genbank	58_37c	+1	provisional	missense	c.1025	p.A342G	0.001	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRIC285	0	genome.wustl.edu	37	20	62195294	62195294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	62195294	62195294	C	T	SNP	PRIC285	NM_001037335.2	human	genbank	58_37c	-1	reviewed	missense	c.4881	p.M1627I	1.000	HMMPfam_RNB	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II,PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PRKACG	0	genome.wustl.edu	37	9	71628311	71628311	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	71628311	71628311	G	T	SNP	PRKACG	NM_002732.3	human	genbank	58_37c	-1	reviewed	missense	c.698	p.A233D	0.954	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PRKCQ	0	genome.wustl.edu	37	10	6504320	6504320	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	6504320	6504320	C	T	SNP	PRKCQ	NM_006257.2	human	genbank	58_37c	-1	reviewed	missense	c.1453	p.A485T	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
PRUNE2	0	genome.wustl.edu	37	9	79324308	79324308	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	79324308	79324308	G	T	SNP	PRUNE2	NM_015225.2	human	genbank	58_37c	-1	validated	missense	c.2882	p.S961Y	1.000	NULL	HMMSmart_SEC14,superfamily_CRAL_TRIO_C,superfamily_Ferritin/RR_like,superfamily_SSF64182	-	no_errors
PRUNE2	0	genome.wustl.edu	37	9	79325223	79325223	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	79325223	79325223	C	A	SNP	PRUNE2	NM_015225.2	human	genbank	58_37c	-1	validated	missense	c.1967	p.W656L	1.000	NULL	HMMSmart_SEC14,superfamily_CRAL_TRIO_C,superfamily_Ferritin/RR_like,superfamily_SSF64182	-	no_errors
PSG1	0	genome.wustl.edu	37	19	43373177	43373177	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	43373177	43373177	G	T	SNP	PSG1	NM_006905.2	human	genbank	58_37c	-1	validated	missense	c.719	p.P240H	0.016	superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89692883	89692883	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	10	89692883	89692883	C	G	SNP	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	missense	c.367	p.H123D	1.000	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
PTPN4	0	genome.wustl.edu	37	2	120640129	120640129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	120640129	120640129	G	A	SNP	PTPN4	NM_002830.2	human	genbank	58_37c	+1	reviewed	missense	c.517	p.D173N	1.000	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_FA,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
QSER1	0	genome.wustl.edu	37	11	32955888	32955888	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	32955888	32955888	G	A	SNP	QSER1	NM_001076786.1	human	genbank	58_37c	+1	provisional	silent	c.2697	p.V899	1.000	NULL	NULL	-	no_errors
RAG1	0	genome.wustl.edu	37	11	36596585	36596585	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	11	36596585	36596585	C	T	SNP	RAG1	NM_000448.2	human	genbank	58_37c	+1	reviewed	silent	c.1731	p.I577	0.983	NULL	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,HMMPfam_zf-RAG1,superfamily_RING/U-box	-	no_errors
RAPGEF2	0	genome.wustl.edu	37	4	160252682	160252682	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	4	160252682	160252682	G	T	SNP	RAPGEF2	NM_014247.2	human	genbank	58_37c	+1	validated	nonsense	c.1084	p.E362*	1.000	HMMSmart_RasGEFN,superfamily_Ras_GEF	HMMPfam_RA,HMMSmart_RA,HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_RasGEF_N,HMMSmart_RasGEFN,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF,superfamily_cNMP_binding	-	no_errors
RECQL5	0	genome.wustl.edu	37	17	73625808	73625808	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	73625808	73625808	G	A	SNP	RECQL5	NM_004259.5	human	genbank	58_37c	-1	validated	missense	c.1927	p.P643S	0.021	HMMPfam_RecQ5	HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_RecQ5,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RELN	0	genome.wustl.edu	37	7	103197424	103197424	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	103197424	103197424	C	A	SNP	RELN	NM_005045.3	human	genbank	58_37c	-1	reviewed	missense	c.5797	p.G1933C	1.000	NULL	HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196	-	no_errors
RGS1	0	genome.wustl.edu	37	1	192545958	192545958	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	192545958	192545958	C	G	SNP	RGS1	NM_002922.3	human	genbank	58_37c	+1	reviewed	silent	c.273	p.A91	0.322	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	-	no_errors
RUNX1	0	genome.wustl.edu	37	21	36164864	36164864	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	21	36164864	36164864	G	A	SNP	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	silent	c.1011	p.P337	0.060	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
RUNX2	0	genome.wustl.edu	37	6	45514594	45514594	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	45514594	45514594	C	G	SNP	RUNX2	NM_001024630.3	human	genbank	58_37c	+1	reviewed	missense	c.1322	p.P441R	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SAFB	0	genome.wustl.edu	37	19	5654079	5654079	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	5654079	5654079	A	G	SNP	SAFB	NM_002967.2	human	genbank	58_37c	+1	reviewed	missense	c.1534	p.N512D	0.014	superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,superfamily_SSF68906	-	no_errors
SCN2A	0	genome.wustl.edu	37	2	166201118	166201118	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	166201118	166201118	G	C	SNP	SCN2A	NM_001040142.1	human	genbank	58_37c	+1	reviewed	missense	c.2616	p.K872N	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SCN7A	0	genome.wustl.edu	37	2	167285716	167285716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	167285716	167285716	C	T	SNP	SCN7A	NM_002976.2	human	genbank	58_37c	-1	validated	missense	c.2661	p.M887I	0.145	NULL	HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SIRT7	0	genome.wustl.edu	37	17	79870419	79870419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	79870419	79870419	G	C	SNP	SIRT7	NM_016538.1	human	genbank	58_37c	-1	reviewed	missense	c.1076	p.S359W	0.288	NULL	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain	-	no_errors
SLC35F4	0	genome.wustl.edu	37	14	58056019	58056019	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	14	58056019	58056019	T	G	SNP	SLC35F4	NM_001080455.1	human	genbank	58_37c	-1	provisional	missense	c.610	p.N204H	1.000	NULL	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
SLC44A5	0	genome.wustl.edu	37	1	75693410	75693410	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	75693410	75693410	C	T	SNP	SLC44A5	NM_152697.4	human	genbank	58_37c	-1	validated	splice_site	c.985+1	e12+1	1.000	-	-	-	no_errors
SLFN14	0	genome.wustl.edu	37	17	33884375	33884375	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	33884375	33884375	G	C	SNP	SLFN14	NM_001129820.1	human	genbank	58_37c	-1	provisional	missense	c.707	p.A236G	1.000	HMMPfam_AAA_4	HMMPfam_AAA_4	-	no_errors
SPAM1	0	genome.wustl.edu	37	7	123594195	123594195	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	123594195	123594195	G	A	SNP	SPAM1	NM_003117.4	human	genbank	58_37c	+1	reviewed	missense	c.571	p.E191K	0.054	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat	-	no_errors
SPATA5L1	0	genome.wustl.edu	37	15	45707816	45707816	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	45707816	45707816	C	T	SNP	SPATA5L1	NM_024063.2	human	genbank	58_37c	+1	validated	missense	c.1676	p.A559V	1.000	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SPTA1	0	genome.wustl.edu	37	1	158612286	158612286	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	158612286	158612286	C	T	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	missense	c.4652	p.R1551Q	0.796	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
SRRT	0	genome.wustl.edu	37	7	100484569	100484569	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	7	100484569	100484569	C	T	SNP	SRRT	NM_015908.5	human	genbank	58_37c	+1	validated	missense	c.1801	p.R601W	1.000	NULL	HMMPfam_ARS2	-	no_errors
SSTR2	0	genome.wustl.edu	37	17	71165749	71165749	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	71165749	71165749	T	A	SNP	SSTR2	NM_001050.2	human	genbank	58_37c	+1	reviewed	silent	c.291	p.P97	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
STARD13	0	genome.wustl.edu	37	13	33739512	33739512	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	13	33739512	33739512	A	G	SNP	STARD13	NM_178006.3	human	genbank	58_37c	-1	validated	silent	c.285	p.H95	1.000	HMMPfam_SAM_2	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like	-	no_errors
SYN3	0	genome.wustl.edu	37	22	32923944	32923958	+	In_Frame_Del	DEL	GCCCCAGCTGGGCTT	GCCCCAGCTGGGCTT	-	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	GCCCCAGCTGGGCTT	GCCCCAGCTGGGCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	22	32923944	32923958	GCCCCAGCTGGGCTT	-	DEL	SYN3	NM_003490.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1279_1265	p.QAQLG422in_frame_del	0.966:0.817:0.990:0.998:0.998:1.000:1.000:1.000:1.000:0.995:0.970:0.968:0.971:0.973:0.976	NULL	HMMPfam_Synapsin,HMMPfam_Synapsin_C,superfamily_PreATP-grasp domain,HMMPfam_Synapsin_N,PatternScan_SYNAPSIN_2,PatternScan_SYNAPSIN_1,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152527416	152527416	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	152527416	152527416	C	G	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	missense	c.22906	p.D7636H	0.999	HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
TBC1D8B	0	genome.wustl.edu	37	X	106097454	106097454	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	106097454	106097454	T	G	SNP	TBC1D8B	NM_017752.2	human	genbank	58_37c	+1	validated	missense	c.2280	p.D760E	0.999	NULL	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_GRAM,HMMSmart_SM00568,PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
TDRD6	0	genome.wustl.edu	37	6	46657757	46657757	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	6	46657757	46657757	T	G	SNP	TDRD6	NM_001010870.2	human	genbank	58_37c	+1	validated	missense	c.1892	p.I631S	0.980	NULL	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748	-	no_errors
TIA1	0	genome.wustl.edu	37	2	70442526	70442526	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	70442526	70442526	C	G	SNP	TIA1	NM_022173.2	human	genbank	58_37c	-1	reviewed	missense	c.865	p.D289H	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
TOP1	0	genome.wustl.edu	37	20	39751880	39751880	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	39751880	39751880	C	A	SNP	TOP1	NM_003286.2	human	genbank	58_37c	+1	reviewed	silent	c.2241	p.T747	1.000	superfamily_DNA breaking-rejoining enzymes	HMMPfam_Topoisom_I_N,superfamily_Eukaryotic DNA topoisomerase I N-terminal DNA-binding fragment,superfamily_Eukaryotic DNA topoisomerase I dispensable insert domain,superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I,PatternScan_TOPOISOMERASE_I_EUK	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	byCluster	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	7578406	7578406	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.524	p.R175H	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTLL6	0	genome.wustl.edu	37	17	46882267	46882267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	46882267	46882267	C	T	SNP	TTLL6	NM_001130918.1	human	genbank	58_37c	-1	validated	missense	c.190	p.E64K	0.122	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
TTN	0	genome.wustl.edu	37	2	179566921	179566921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	2	179566921	179566921	G	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.26753	p.T8918M	1.000	HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UBE4B	0	genome.wustl.edu	37	1	10177641	10177642	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	10177641	10177642	-	A	INS	UBE4B	NM_001105562.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1321_1322	p.A444fs	1.000:1.000	NULL	HMMPfam_U-box,HMMSmart_SM00504,HMMPfam_Ufd2P_core,superfamily_RING/U-box	-	no_errors
UNC5D	0	genome.wustl.edu	37	8	35606156	35606156	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	8	35606156	35606156	C	G	SNP	UNC5D	NM_080872.2	human	genbank	58_37c	+1	validated	silent	c.1878	p.V626	0.997	HMMPfam_ZU5,HMMSmart_SM00218	PatternScan_SERPIN,HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
USH1G	0	genome.wustl.edu	37	17	72916079	72916079	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	72916079	72916079	G	A	SNP	USH1G	NM_173477.2	human	genbank	58_37c	-1	reviewed	silent	c.852	p.S284	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SAM_homology	-	no_errors
USHBP1	0	genome.wustl.edu	37	19	17370192	17370192	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	17370192	17370192	G	A	SNP	USHBP1	NM_031941.3	human	genbank	58_37c	-1	validated	silent	c.952	p.L318	1.000	HMMPfam_MCC-bdg_PDZ	HMMPfam_MCC-bdg_PDZ	-	no_errors
VPS13A	0	genome.wustl.edu	37	9	79834980	79834980	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	9	79834980	79834980	G	C	SNP	VPS13A	NM_033305.2	human	genbank	58_37c	+1	reviewed	missense	c.865	p.E289Q	1.000	NULL	HMMPfam_DUF1162	-	no_errors
VSIG4	0	genome.wustl.edu	37	X	65253420	65253420	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	X	65253420	65253420	A	T	SNP	VSIG4	NM_007268.2	human	genbank	58_37c	-1	reviewed	missense	c.308	p.L103Q	0.684	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
WDR64	0	genome.wustl.edu	37	1	241959652	241959652	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	241959652	241959652	G	T	SNP	WDR64	NM_144625.4	human	genbank	58_37c	+1	validated	missense	c.1801	p.G601C	0.200	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
WFDC5	0	genome.wustl.edu	37	20	43739046	43739046	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	20	43739046	43739046	G	T	SNP	WFDC5	NM_145652.2	human	genbank	58_37c	-1	reviewed	missense	c.362	p.A121D	0.000	HMMSmart_SM00217,superfamily_Elafin-like	HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like,PatternScan_4_DISULFIDE_CORE	-	no_errors
ZBBX	0	genome.wustl.edu	37	3	167000239	167000239	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	3	167000239	167000239	T	C	SNP	ZBBX	NM_024687.2	human	genbank	58_37c	-1	validated	missense	c.1924	p.N642D	0.018	NULL	HMMPfam_zf-B_box	-	no_errors
ZBTB4	0	genome.wustl.edu	37	17	7366443	7366443	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	17	7366443	7366443	C	A	SNP	ZBTB4	NM_001128833.1	human	genbank	58_37c	-1	validated	nonsense	c.1858	p.E620*	1.000	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZBTB8B	0	genome.wustl.edu	37	1	32946500	32946500	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	1	32946500	32946500	C	A	SNP	ZBTB8B	NM_001145720.1	human	genbank	58_37c	+1	provisional	missense	c.1000	p.L334M	1.000	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF541	0	genome.wustl.edu	37	19	48058965	48058965	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	48058965	48058965	C	G	SNP	ZNF541	NM_001101419.1	human	genbank	58_37c	-1	validated	missense	c.149	p.S50T	0.761	NULL	HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF592	0	genome.wustl.edu	37	15	85326113	85326113	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	15	85326113	85326113	T	A	SNP	ZNF592	NM_014630.2	human	genbank	58_37c	+1	validated	silent	c.207	p.I69	0.954	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF610	0	genome.wustl.edu	37	19	52869627	52869627	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	52869627	52869627	C	A	SNP	ZNF610	NM_173530.2	human	genbank	58_37c	+1	validated	silent	c.996	p.T332	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF808	0	genome.wustl.edu	37	19	53057483	53057483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24Q-01A-12D-A167-09	TCGA-AR-A24Q-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9d691f2-ad2a-4a3b-ae30-ed4af96d75f2	cc88b2b8-d0af-45be-9b32-7849fa97deae	19	53057483	53057483	G	T	SNP	ZNF808	NM_001039886.3	human	genbank	58_37c	+1	validated	missense	c.1314	p.Q438H	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
