Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACPP	0	genome.wustl.edu	37	3	132047117	132047117	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	3	132047117	132047117	C	T	SNP	ACPP	NM_001134194.1	human	genbank	58_37c	+1	reviewed	missense	c.127	p.R43W	1.000	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_SSF53254	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,PatternScan_HIS_ACID_PHOSPHAT_2,superfamily_SSF53254	-	no_errors
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
ALG13	0	genome.wustl.edu	37	X	110951473	110951473	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	110951473	110951473	T	C	SNP	ALG13	ENST00000394780	human	ensembl	58_37c	+1	known	missense	c.602	p.L201P	0.000	superfamily_SSF54001	HMMPfam_OTU,HMMPfam_Glyco_tran_28_C,superfamily_SSF53756,superfamily_SSF54001,superfamily_SSF63748	-	no_errors
B4GALT1	0	genome.wustl.edu	37	9	33135286	33135286	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	9	33135286	33135286	T	C	SNP	B4GALT1	NM_001497.3	human	genbank	58_37c	-1	reviewed	silent	c.549	p.P183	0.990	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
CARD6	0	genome.wustl.edu	37	5	40841761	40841761	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	5	40841761	40841761	A	C	SNP	CARD6	NM_032587.3	human	genbank	58_37c	+1	reviewed	silent	c.277	p.R93	0.003	HMMPfam_CARD,superfamily_DEATH_like	HMMPfam_CARD,superfamily_DEATH_like	-	no_errors
CCDC114	0	genome.wustl.edu	37	19	48821779	48821779	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	48821779	48821779	G	A	SNP	CCDC114	NM_144577.3	human	genbank	58_37c	-1	validated	silent	c.114	p.S38	0.000	NULL	NULL	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68862076	68862076	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	16	68862076	68862076	G	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	splice_site	c.2165-1	e14-1	1.000	-	-	-	no_errors
CRK	0	genome.wustl.edu	37	17	1340206	1340206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	17	1340206	1340206	C	T	SNP	CRK	NM_016823.2	human	genbank	58_37c	-1	reviewed	missense	c.485	p.R162Q	1.000	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2,superfamily_SH2 domain	-	no_errors
ELF4	0	genome.wustl.edu	37	X	129201171	129201171	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	129201171	129201171	C	T	SNP	ELF4	NM_001127197.1	human	genbank	58_37c	-1	reviewed	missense	c.1517	p.G506E	0.152	NULL	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13556	13556	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	MT	13556	13556	G	A	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	nonsense	c.1220	p.W407*	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198804	0	genome.wustl.edu	37	MT	6384	6384	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	MT	6384	6384	G	A	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.481	p.A161T	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000205454	0	genome.wustl.edu	37	16	33020809	33020809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	16	33020809	33020809	G	A	SNP	ENSG00000205454	ENST00000411420	human	ensembl	58_37c	+1	known	missense	c.217	p.D73N	0.034	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_start_codon:no_stop_codon
ENSG00000210082	0	genome.wustl.edu	37	MT	3094	3094	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	MT	3094	3094	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000244385	0	genome.wustl.edu	37	3	195701310	195701311	+	Splice_Site	INS	-	-	AA	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	3	195701310	195701311	-	AA	INS	ENSG00000244385	ENST00000354937	human	ensembl	58_37c	-1	novel	splice_site_ins	c.NULL	NULL	1.000:0.999	-	-	-	no_coding_region
ENSG00000247581	0	genome.wustl.edu	37	19	2513914	2513915	+	RNA	INS	-	-	C	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	2513914	2513915	-	C	INS	ENSG00000247581	ENST00000500742	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ENSG00000248857	0	genome.wustl.edu	37	X	118222466	118222466	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	118222466	118222466	C	A	SNP	ENSG00000248857	ENST00000440399	human	ensembl	58_37c	-1	known	missense	c.946	p.A316S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
EP400	0	genome.wustl.edu	37	12	132466866	132466866	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	132466866	132466866	A	G	SNP	EP400	NM_015409.3	human	genbank	58_37c	+1	validated	missense	c.1769	p.Q590R	0.996	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HSA,superfamily_Homeodomain_like,HMMSmart_HSA,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
FAM188B	0	genome.wustl.edu	37	7	30825399	30825399	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	30825399	30825399	T	A	SNP	FAM188B	NM_032222.2	human	genbank	58_37c	+1	validated	missense	c.454	p.F152I	0.442	NULL	NULL	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors
GPR116	0	genome.wustl.edu	37	6	46826226	46826226	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	6	46826226	46826226	G	A	SNP	GPR116	NM_001098518.1	human	genbank	58_37c	-1	validated	silent	c.3414	p.C1138	1.000	HMMPfam_7tm_2	HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_EGF_2,HMMPfam_ig,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Immunoglobulin,superfamily_SEA domain	-	no_errors
HMGCS1	0	genome.wustl.edu	37	5	43294939	43294939	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	5	43294939	43294939	G	T	SNP	HMGCS1	NM_001098272.1	human	genbank	58_37c	-1	validated	nonsense	c.930	p.Y310*	1.000	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like	PatternScan_HMG_COA_SYNTHASE,HMMPfam_HMG_CoA_synt_N,HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152186614	152186614	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	1	152186614	152186614	C	G	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	silent	c.7491	p.S2497	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
HSCB	0	genome.wustl.edu	37	22	29141935	29141935	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	22	29141935	29141935	T	A	SNP	HSCB	NM_172002.3	human	genbank	58_37c	+1	validated	missense	c.507	p.N169K	1.000	HMMPfam_HSCB_C,superfamily_HSC20_C	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,HMMPfam_HSCB_C,superfamily_HSC20_C,PatternScan_DNAJ_1	-	no_errors
IQSEC2	0	genome.wustl.edu	37	X	53264131	53264133	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	53264131	53264133	TGG	-	DEL	IQSEC2	NM_001111125.1	human	genbank	58_37c	-1	validated	in_frame_del	c.3737_3735	p.H1247in_frame_del	0.997:0.991:0.967	NULL	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMSmart_PH,superfamily_SSF50729	-	no_errors
KIAA0754	0	genome.wustl.edu	37	1	39878515	39878515	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	1	39878515	39878515	A	G	SNP	KIAA0754	NM_015038.1	human	genbank	58_37c	+1	predicted	missense	c.2578	p.I860V	0.000	NULL	NULL	-	no_errors
LOC100288755	0	genome.wustl.edu	37	21	9865820	9865820	+	RNA	SNP	T	T	C	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	21	9865820	9865820	T	C	SNP	LOC100288755	XR_078568.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.020	-	-	-	pseudogene
LOC100288755	0	genome.wustl.edu	37	21	9865872	9865872	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	21	9865872	9865872	G	A	SNP	LOC100288755	XR_078568.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.022	-	-	-	pseudogene
LOC727768	0	genome.wustl.edu	37	Y	13311500	13311500	+	Missense_Mutation	SNP	C	A	A	rs142076379	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	Y	13311500	13311500	C	A	SNP	LOC727768	XM_002344445.1	human	genbank	58_37c	-1	model	missense	c.829	p.A277S	0.355	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
LOC729501	0	genome.wustl.edu	37	13	19042327	19042327	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	13	19042327	19042327	A	G	SNP	LOC729501	XM_002343229.1	human	genbank	58_37c	-1	model	silent	c.1755	p.T585	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	pseudogene
LRRC4B	0	genome.wustl.edu	37	19	51021711	51021711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	51021711	51021711	G	A	SNP	LRRC4B	NM_001080457.1	human	genbank	58_37c	-1	provisional	missense	c.1259	p.T420M	1.000	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
MEGF8	0	genome.wustl.edu	37	19	42875614	42875614	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	42875614	42875614	C	T	SNP	MEGF8	NM_001410.2	human	genbank	58_37c	+1	validated	nonsense	c.7048	p.R2350*	1.000	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMSmart_EGF_CA,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_PSI,HMMSmart_PSI,HMMSmart_EGF,HMMPfam_Kelch_1,superfamily_Gal_oxid_central,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195505822	195505822	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	3	195505822	195505822	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.12245	p.P4082L	0.432	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1251759	1251759	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	11	1251759	1251759	C	T	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.1408	p.R470W	0.980	HMMPfam_VWD,HMMSmart_SM00216	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
PCDHB10	0	genome.wustl.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	AGGCCG	-	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	AGGCCG	AGGCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	5	140574170	140574175	AGGCCG	-	DEL	PCDHB10	NM_018930.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2045_2050	p.EA684in_frame_del	0.001:0.028:0.066:0.762:0.806:0.823	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PLEKHH2	0	genome.wustl.edu	37	2	43971118	43971118	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	2	43971118	43971118	G	T	SNP	PLEKHH2	NM_172069.3	human	genbank	58_37c	+1	validated	missense	c.3545	p.G1182V	1.000	HMMSmart_SM00295	HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like	-	no_errors
POLR2J	0	genome.wustl.edu	37	7	102116678	102116678	+	Silent	SNP	A	A	G	rs11557255	byFrequency	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	102116678	102116678	A	G	SNP	POLR2J	NM_006234.4	human	genbank	58_37c	-1	reviewed	silent	c.93	p.C31	0.723	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L	PatternScan_RNA_POL_L_13KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L	-	no_errors
PRMT7	0	genome.wustl.edu	37	16	68379634	68379634	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	16	68379634	68379634	G	T	SNP	PRMT7	NM_019023.2	human	genbank	58_37c	+1	validated	silent	c.984	p.V328	0.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
RBM19	0	genome.wustl.edu	37	12	114395756	114395756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	114395756	114395756	G	A	SNP	RBM19	NM_016196.3	human	genbank	58_37c	-1	reviewed	missense	c.671	p.S224L	0.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
RPGR	0	genome.wustl.edu	37	X	38146402	38146402	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	38146402	38146402	C	A	SNP	RPGR	NM_001034853.1	human	genbank	58_37c	-1	reviewed	missense	c.1850	p.G617V	0.002	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
SAMD4A	0	genome.wustl.edu	37	14	55251070	55251070	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	14	55251070	55251070	A	G	SNP	SAMD4A	ENST00000251091	human	ensembl	58_37c	+1	known	missense	c.944	p.H315R	0.000	NULL	NULL	-	no_start_codon
SNAPC4	0	genome.wustl.edu	37	9	139287147	139287147	+	Missense_Mutation	SNP	C	C	T	rs138968321	byFrequency	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	9	139287147	139287147	C	T	SNP	SNAPC4	NM_003086.2	human	genbank	58_37c	-1	validated	missense	c.715	p.E239K	0.979	HMMSmart_SANT	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-	no_errors
TMEM132C	0	genome.wustl.edu	37	12	129180412	129180412	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	129180412	129180412	C	A	SNP	TMEM132C	NM_001136103.2	human	genbank	58_37c	+1	provisional	silent	c.1357	p.R453	0.828	NULL	NULL	-	no_errors
TRBV5-1	0	genome.wustl.edu	37	7	142021145	142021145	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	142021145	142021145	G	T	SNP	TRBV5-1	ENST00000390381	human	ensembl	58_37c	+1	known	missense	c.125	p.C42F	0.003	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon:bad_bp_length_for_coding_region
TUBB4Q	0	genome.wustl.edu	37	4	190904414	190904414	+	Missense_Mutation	SNP	T	T	C	rs71512812	unknown	TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	4	190904414	190904414	T	C	SNP	TUBB4Q	NM_020040.3	human	genbank	58_37c	-1	validated	missense	c.569	p.H190R	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_start_codon
