Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
AGRN	375790	genome.wustl.edu	37	1	983473	983473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_198576.2	+1	validated	p.R1278H	0.000	20	0%	19	26.3%	1	100%	possibly_damaging(0.865)	tolerated(0.13)	deleterious(0.588)	NULL
ACAP3	116983	genome.wustl.edu	37	1	1238586	1238586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_030649.2	-1	validated	p.V61I	0.920	46	0%	17	29.4%	1	0%	benign(0.001)	tolerated(0.72)	neutral(0.002)	NULL
CCNL2	81669	genome.wustl.edu	37	1	1322784	1322784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_030937.4	-1	validated	p.R464W	1.000	185	0%	116	29.3%	30	36.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NADK	65220	genome.wustl.edu	37	1	1684348	1684350	+	In_Frame_Del	DEL	CCT	CCT	-	rs112506726		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_023018.3	-1	validated	p.E445in_frame_del	0.794:0.761:0.267	-	-	-	-	-	-	-	-	-	NULL
NPHP4	261734	genome.wustl.edu	37	1	5947513	5947513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015102.2	-1	reviewed	p.Q773R	1.000	45	0%	20	30%	1	100%	benign(0.151)	tolerated(0.17)	neutral(0.072)	NULL
RERE	473	genome.wustl.edu	37	1	8418661	8418661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001042681.1	-1	reviewed	p.R1312W	1.000	137	0%	68	38.2%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Atrophin-1
SLC2A5	6518	genome.wustl.edu	37	1	9098903	9098903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003039.2	-1	validated	p.A361E	0.000	13	0.000	8	0.625	7	0%	benign(0.313)	deleterious(0.01)	deleterious(0.503)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
MTHFR	4524	genome.wustl.edu	37	1	11863236	11863236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000423400	-1	known	p.R3W	0.000	74	0%	31	32.3%	0	-	unknown(0)	-	-	NULL
UBR4	23352	genome.wustl.edu	37	1	19492181	19492181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020765.2	-1	validated	p.R1394C	1.000	276	0.7%	112	23.2%	0	-	benign(0.031)	tolerated(0.1)	neutral(0.288)	superfamily_ARM repeat
USP48	84196	genome.wustl.edu	37	1	22074646	22074646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032236.5	-1	reviewed	p.R298H	1.000	428	0%	168	29.2%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
E2F2	1870	genome.wustl.edu	37	1	23847483	23847483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004091.2	-1	reviewed	p.T220M	0.000	178	0%	91	14.3%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	NULL
MAP3K6	9064	genome.wustl.edu	37	1	27682194	27682194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004672.3	-1	reviewed	p.A1252T	1.000	366	0%	210	18.6%	51	27.4%	probably_damaging(0.977)	tolerated(0.21)	neutral(0.463)	superfamily_SAM/Pointed domain
FGR	2268	genome.wustl.edu	37	1	27942301	27942301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001042729.1	-1	reviewed	p.P246L	1.000	46	0%	23	26.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,superfamily_SSF55550
MATN1	4146	genome.wustl.edu	37	1	31188062	31188062	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002379.3	-1	reviewed	p.T434	0.018	460	0.4%	210	20%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ZMYM4	9202	genome.wustl.edu	37	1	35827356	35827356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005095.2	+1	validated	p.L269P	1.000	276	0%	183	26.2%	1	0%	benign(0.266)	tolerated(0.08)	neutral(0.328)	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35873676	35873676	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000457946	+1	known	p.P947S	1.000	354	0%	195	25.6%	8	62.5%	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39916826	39916826	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000372925	+1	known	p.G3732*	1.000	163	0%	78	15.4%	3	33.3%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PLK3	1263	genome.wustl.edu	37	1	45271170	45271170	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004073.2	+1	validated	p.Y587	0.831	233	0%	92	33.7%	23	13%	-	-	-	HMMPfam_POLO_box,superfamily_Polo-box domain
HECTD3	79654	genome.wustl.edu	37	1	45471738	45471738	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024602.5	-1	validated	p.C592	0.996	91	0%	62	12.9%	4	0%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
SLC1A7	6512	genome.wustl.edu	37	1	53555542	53555542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006671.4	-1	validated	p.V431I	1.000	60	0%	29	20.7%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_SDF
TYW3	127253	genome.wustl.edu	37	1	75229619	75229619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_138467.2	+1	validated	p.M201T	0.000	155	0%	67	26.9%	7	85.7%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
IFI44L	10964	genome.wustl.edu	37	1	79093737	79093737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006820.2	+1	validated	p.R46H	0.001	204	0%	73	28.8%	1	0%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
GBP4	115361	genome.wustl.edu	37	1	89650944	89650944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_052941.4	-1	validated	p.R639H	0.000	299	0%	250	27.6%	5	0%	possibly_damaging(0.438)	deleterious(0.03)	deleterious(0.507)	NULL
ZNF644	84146	genome.wustl.edu	37	1	91403294	91403296	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_201269.1	-1	validated	p.E1145in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
BTBD8	284697	genome.wustl.edu	37	1	92546141	92546141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_183242.3	+1	validated	p.G5W	0.996	74	0%	26	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAB21L3	126868	genome.wustl.edu	37	1	116666822	116666822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152367.2	+1	validated	p.G109C	0.789	155	0%	67	46.3%	0	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
NBPF14	25832	genome.wustl.edu	37	1	148025815	148025815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015383.1	-1	predicted	p.R6Q	0.001	466	0%	175	16%	0	-	benign(0.362)	tolerated(0.08)	neutral(0.415)	NULL
SF3B4	10262	genome.wustl.edu	37	1	149898300	149898300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005850.3	-1	reviewed	p.V225A	0.995	120	0%	71	26.8%	80	33.7%	benign(0.026)	tolerated(0.59)	neutral(0.005)	NULL
ENSA	2029	genome.wustl.edu	37	1	150598215	150598215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_207042.1	-1	reviewed	p.A101T	1.000	441	0%	207	23.2%	138	31.8%	possibly_damaging(0.905)	tolerated(0.17)	neutral(0.418)	HMMPfam_Endosulfine
INTS3	65123	genome.wustl.edu	37	1	153724779	153724779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_023015.3	+1	validated	p.R252W	1.000	428	0%	256	25.4%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CREB3L4	148327	genome.wustl.edu	37	1	153945250	153945252	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_130898.2	+1	provisional	p.E193in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	superfamily_Euk_transcr_DNA
KCNN3	3782	genome.wustl.edu	37	1	154680586	154680588	+	In_Frame_Del	DEL	GCT	GCT	-	rs149440400	by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002249.4	-1	reviewed	p.Q687in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KCNN3	3782	genome.wustl.edu	37	1	154842243	154842243	+	Silent	SNP	A	A	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002249.4	-1	reviewed	p.L66	0.000	25	0%	34	35.3%	0	-	-	-	-	NULL
ZBTB7B	51043	genome.wustl.edu	37	1	154987219	154987219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015872.2	+1	validated	p.R28H	1.000	65	0%	37	40.5%	5	60%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	superfamily_BTB/POZ_fold,HMMPfam_BTB
LOC100289439	100289439	genome.wustl.edu	37	1	155295483	155295483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	XM_002342139.1	-1	model	p.T34I	0.000	151	0%	90	22.2%	0	-	-	-	-	NULL
NES	10763	genome.wustl.edu	37	1	156640397	156640397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006617.1	-1	reviewed	p.T1195A	0.000	61	0%	35	40%	8	0%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
PEX19	5824	genome.wustl.edu	37	1	160253338	160253338	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002857.3	-1	reviewed	p.S54	0.979	218	0.5%	115	21.7%	4	0%	-	-	-	NULL
RFWD2	64326	genome.wustl.edu	37	1	176054997	176054997	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022457.5	-1	validated	p.T352	0.863	326	0%	150	30%	9	11.1%	-	-	-	superfamily_WD40 repeat-like
RASAL2	9462	genome.wustl.edu	37	1	178442219	178442219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_170692.2	+1	reviewed	p.I1219V	1.000	235	0.4%	74	32.4%	1	100%	possibly_damaging(0.933)	deleterious(0.01)	deleterious(0.784)	NULL
TOR1AIP1	26092	genome.wustl.edu	37	1	179851896	179851896	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015602.2	+1	validated	p.L87	0.009	89	0%	52	38.5%	0	-	-	-	-	NULL
EDEM3	80267	genome.wustl.edu	37	1	184692924	184692924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_025191.3	-1	validated	p.V272M	0.996	280	0%	189	27.5%	0	-	possibly_damaging(0.658)	deleterious(0.01)	deleterious(0.638)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
TROVE2	6738	genome.wustl.edu	37	1	193053734	193053737	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	TTGT	TTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004600.5	+1	validated	p.C499fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
IPO9	55705	genome.wustl.edu	37	1	201843997	201843997	+	Silent	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018085.4	+1	validated	p.E957	0.591	424	0%	194	17.5%	16	31.2%	-	-	-	superfamily_ARM repeat
GPR37L1	9283	genome.wustl.edu	37	1	202097525	202097527	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004767.3	+1	validated	p.C433in_frame_del	0.998:0.998:0.996	-	-	-	-	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
PPP1R12B	4660	genome.wustl.edu	37	1	202457690	202457690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032105.2	+1	reviewed	p.E627G	1.000	305	0%	108	20.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYBPH	4608	genome.wustl.edu	37	1	203144718	203144718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004997.2	-1	validated	p.T56A	0.000	35	0%	16	31.2%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	NULL
CENPF	1063	genome.wustl.edu	37	1	214815548	214815548	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016343.3	+1	reviewed	p.L1289	0.000	166	0%	48	25%	0	-	-	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	215956223	215956223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_206933.2	-1	reviewed	p.S3481N	0.971	219	0%	74	33.8%	0	-	possibly_damaging(0.487)	tolerated(0.4)	neutral(0.178)	HMMSmart_SM00060,superfamily_Fibronectin type III
URB2	9816	genome.wustl.edu	37	1	229771492	229771492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014777.2	+1	provisional	p.D378N	1.000	99	0%	33	30.3%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
FMN2	56776	genome.wustl.edu	37	1	240370979	240370979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020066.4	+1	validated	p.P956L	0.874	78	0%	49	28.6%	0	-	unknown(0)	tolerated(0.23)	-	HMMSmart_FH2,HMMPfam_Drf_FH1
OR2B11	127623	genome.wustl.edu	37	1	247614785	247614785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001004492.1	-1	provisional	p.T167M	0.017	61	1.6%	34	32.4%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_7tm_1,superfamily_SSF81321
KCNS3	3790	genome.wustl.edu	37	2	18113421	18113421	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002252.3	+1	reviewed	p.A382	0.000	197	0%	92	32.6%	3	0%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
UBXN2A	165324	genome.wustl.edu	37	2	24199912	24199912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_181713.3	+1	validated	p.A85V	1.000	136	0%	102	23.5%	8	25%	possibly_damaging(0.923)	tolerated(0.26)	neutral(0.406)	HMMPfam_SEP,HMMSmart_SEP,superfamily_SEP
ADCY3	109	genome.wustl.edu	37	2	25044482	25044482	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004036.3	-1	reviewed	p.Q1011*	1.000	104	1%	32	25%	8	0%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
EFR3B	22979	genome.wustl.edu	37	2	25366691	25366691	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000264719	+1	known	p.L506F	0.145	146	0%	84	21.4%	0	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32690159	32690159	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016252.3	+1	reviewed	p.L1761	1.000	431	0%	389	21.3%	1	0%	-	-	-	NULL
DYSF	8291	genome.wustl.edu	37	2	71730345	71730345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001130987.1	+1	reviewed	p.F81L	1.000	74	0%	36	30.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
TMEM127	55654	genome.wustl.edu	37	2	96919780	96919781	+	In_Frame_Ins	INS	-	-	TGC	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017849.1	-1	provisional	p.161in_frame_insQ	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TMEM131	23505	genome.wustl.edu	37	2	98375419	98375419	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015348.1	-1	validated	p.S1768	0.215	115	0%	69	23.2%	26	23%	-	-	-	NULL
TGFBRAP1	9392	genome.wustl.edu	37	2	105912819	105912819	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001142621.1	-1	validated	p.K344N	1.000	260	0%	154	27.9%	0	-	possibly_damaging(0.793)	tolerated(0.26)	neutral(0.332)	NULL
POTEE	445582	genome.wustl.edu	37	2	132010544	132010544	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001083538.1	+1	validated	p.V550	0.001	1501	0%	576	18.6%	0	-	-	-	-	NULL
LRP1B	53353	genome.wustl.edu	37	2	141643776	141643776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018557.2	-1	validated	p.Q1299K	1.000	201	0%	76	27.6%	0	-	benign(0.291)	tolerated(0.53)	neutral(0.097)	HMMSmart_LY,superfamily_SSF63825
UPP2	151531	genome.wustl.edu	37	2	158958589	158958589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001135098.1	+1	validated	p.I62T	0.997	349	0%	201	33.3%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
TTN	7273	genome.wustl.edu	37	2	179428834	179428834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000356127	-1	known	p.T24772S	0.992	209	0%	38	21.1%	0	-	benign(0.109)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
ITGAV	3685	genome.wustl.edu	37	2	187529934	187529934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002210.3	+1	reviewed	p.A719T	1.000	231	0%	84	25%	2	50%	probably_damaging(0.991)	tolerated(0.18)	deleterious(0.500)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
COL3A1	1281	genome.wustl.edu	37	2	189856425	189856425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000090.3	+1	reviewed	p.R310W	1.000	287	0%	87	24.1%	24	0%	unknown(0)	deleterious(0.02)	-	HMMPfam_Collagen
SLC40A1	30061	genome.wustl.edu	37	2	190426775	190426775	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014585.5	-1	reviewed	p.P515	0.003	245	0%	82	23.2%	103	47.5%	-	-	-	superfamily_MFS general substrate transporter
KANSL1L	151050	genome.wustl.edu	37	2	210894590	210894590	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152519.2	-1	validated	p.S736	0.995	360	0%	238	23.1%	0	-	-	-	-	NULL
SLC19A3	80704	genome.wustl.edu	37	2	228552132	228552132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_025243.3	-1	reviewed	p.I491T	0.000	304	0%	122	15.6%	0	-	possibly_damaging(0.727)	deleterious(0.02)	deleterious(0.647)	NULL
DIS3L2	129563	genome.wustl.edu	37	2	233128109	233128109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152383.4	+1	validated	p.R540C	1.000	239	0%	67	25.4%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNB
AGAP1	116987	genome.wustl.edu	37	2	237032650	237032650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001037131.1	+1	validated	p.V820M	0.977	39	0%	26	26.9%	3	33.3%	benign(0.03)	deleterious(0)	neutral(0.446)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CRBN	51185	genome.wustl.edu	37	3	3192695	3192695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016302.3	-1	reviewed	p.A395T	1.000	245	0.8%	124	28.2%	11	9%	benign(0.004)	tolerated(0.62)	neutral(0.004)	NULL
TADA3	10474	genome.wustl.edu	37	3	9831639	9831639	+	Silent	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006354.2	-1	reviewed	p.T72	0.972	68	0%	47	27.7%	18	22.2%	-	-	-	NULL
SLC6A1	6529	genome.wustl.edu	37	3	11067562	11067562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003042.3	+1	validated	p.R318M	1.000	171	0%	69	24.6%	0	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	HMMPfam_SNF
DCLK3	85443	genome.wustl.edu	37	3	36779044	36779044	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_033403.1	-1	validated	p.V369	0.926	202	0%	98	30.6%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SCN5A	6331	genome.wustl.edu	37	3	38592637	38592637	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001099404.1	-1	reviewed	p.C1742	0.256	144	0%	111	23.4%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CSRNP1	64651	genome.wustl.edu	37	3	39186724	39186724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_033027.3	-1	reviewed	p.R77S	0.029	62	0%	29	27.6%	3	0%	benign(0.017)	deleterious(0.02)	neutral(0.384)	NULL
RPL14	9045	genome.wustl.edu	37	3	40503520	40503521	+	In_Frame_Ins	INS	-	-	CTG	rs61749576	byFrequency	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001034996.1	+1	reviewed	p.153in_frame_insA	0.019:0.022	-	-	-	-	-	-	-	-	-	NULL
ZNF852	285346	genome.wustl.edu	37	3	44542052	44542052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000436261	-1	known	p.T73A	0.000	122	0%	63	28.6%	0	-	benign(0.026)	tolerated(0.77)	neutral(0.002)	NULL
CDCP1	64866	genome.wustl.edu	37	3	45127302	45127302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022842.3	-1	reviewed	p.C780Y	0.053	261	0%	114	30.7%	0	-	benign(0)	tolerated(1)	-	NULL
KIAA1407	57577	genome.wustl.edu	37	3	113697826	113697826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020817.1	-1	predicted	p.Q780R	0.976	287	0%	77	20.8%	4	25%	possibly_damaging(0.837)	tolerated(0.65)	neutral(0.323)	NULL
POLQ	10721	genome.wustl.edu	37	3	121208592	121208592	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_199420.3	-1	validated	p.A1062	0.000	91	0%	40	25%	0	-	-	-	-	NULL
PARP9	83666	genome.wustl.edu	37	3	122255810	122255810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_031458.2	-1	validated	p.F661L	0.978	676	0%	429	24.5%	8	25%	benign(0.119)	deleterious(0)	neutral(0.454)	HMMPfam_PARP,superfamily_ADP-ribosylation
PDIA5	10954	genome.wustl.edu	37	3	122808042	122808042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000316218	+1	known	p.A24T	0.000	222	0%	102	28.4%	4	75%	benign(0)	tolerated(1)	-	NULL
HEG1	57493	genome.wustl.edu	37	3	124732422	124732422	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020733.1	-1	validated	p.S667	0.035	321	0%	156	28.8%	1	0%	-	-	-	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125727586	125727586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001008485.1	-1	validated	p.G415C	0.816	68	0%	33	24.2%	49	38.7%	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126751579	126751579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032242.3	+1	validated	p.S1809N	0.999	81	0%	27	18.5%	6	66.6%	benign(0.002)	tolerated(1)	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLOD2	5352	genome.wustl.edu	37	3	145789197	145789197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_182943.2	-1	reviewed	p.S621Y	1.000	319	0.3%	54	24.1%	8	50%	possibly_damaging(0.822)	deleterious(0.03)	deleterious(0.675)	HMMSmart_P4Hc
ZIC4	84107	genome.wustl.edu	37	3	147113878	147113878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000383075	-1	known	p.T150I	1.000	69	0%	38	26.3%	0	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	HMMSmart_SM00355
SLC2A2	6514	genome.wustl.edu	37	3	170723086	170723086	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000340.1	-1	reviewed	p.S317	0.992	441	0%	87	25.3%	0	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
FNDC3B	64778	genome.wustl.edu	37	3	172060828	172060828	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001135095.1	+1	validated	p.L667V	1.000	324	0%	94	24.5%	3	0%	possibly_damaging(0.598)	tolerated(0.15)	neutral(0.448)	superfamily_Fibronectin type III
KNG1	3827	genome.wustl.edu	37	3	186459974	186459974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001102416.2	+1	reviewed	p.G597C	0.059	235	0%	107	21.5%	0	-	possibly_damaging(0.896)	tolerated(0.09)	deleterious(0.650)	NULL
PIGZ	80235	genome.wustl.edu	37	3	196674649	196674651	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_025163.2	-1	reviewed	p.L373in_frame_del	0.998:0.998:0.910	-	-	-	-	-	-	-	-	-	HMMPfam_Glyco_transf_22
TBC1D14	57533	genome.wustl.edu	37	4	6998131	6998131	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001113361.1	+1	validated	p.R348*	0.994	308	0%	242	22.3%	0	-	-	-	-	NULL
LDB2	9079	genome.wustl.edu	37	4	16504335	16504335	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001290.3	-1	validated	p.W352fs	0.309	-	-	-	-	-	-	-	-	-	HMMPfam_LIM_bind
GPR125	166647	genome.wustl.edu	37	4	22389603	22389604	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_145290.2	-1	validated	p.Q1230fs	1.000:0.297	-	-	-	-	-	-	-	-	-	NULL
LIMCH1	22998	genome.wustl.edu	37	4	41648508	41648509	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014988.2	+1	validated	p.E425fs	0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
SLAIN2	57606	genome.wustl.edu	37	4	48385788	48385788	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000510595	+1	known	p.S32P	1.000	186	0%	75	21.3%	20	55%	-	-	-	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77691968	77691968	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020859.3	+1	validated	p.L1847	1.000	236	0%	65	27.7%	14	28.5%	-	-	-	HMMPfam_ASD2
COPS4	51138	genome.wustl.edu	37	4	83970343	83970343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016129.2	+1	reviewed	p.V60A	1.000	169	0%	111	32.4%	4	25%	possibly_damaging(0.618)	deleterious(0.03)	deleterious(0.580)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89670118	89670118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014883.2	-1	validated	p.R716W	1.000	396	0%	138	17.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TET2	54790	genome.wustl.edu	37	4	106157645	106157645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001127208.1	+1	validated	p.T849I	0.000	125	0%	54	27.8%	1	0%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
TET2	54790	genome.wustl.edu	37	4	106162494	106162494	+	Splice_Site	SNP	A	A	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001127208.1	+1	validated	e2-2	1.000	233	0%	131	19.8%	0	-	-	-	-	-
AIMP1	9255	genome.wustl.edu	37	4	107252949	107252949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001142416.1	+1	reviewed	p.A195V	1.000	320	0%	133	34.6%	48	33.3%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_tRNA_bind,superfamily_Nucleic acid-binding proteins
SEC24B	10427	genome.wustl.edu	37	4	110437683	110437683	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006323.2	+1	reviewed	e11-1	1.000	436	0%	314	26.1%	0	-	-	-	-	-
ANKRD50	57182	genome.wustl.edu	37	4	125590920	125590920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020337.2	-1	validated	p.T1171I	0.998	125	0%	54	33.3%	3	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
ASIC5	51802	genome.wustl.edu	37	4	156775377	156775377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017419.2	-1	reviewed	p.A146V	0.000	303	0%	62	27.4%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_ASC
IRX2	153572	genome.wustl.edu	37	5	2749779	2749779	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001134222.1	-1	validated	p.D124	1.000	228	0.4%	132	26.5%	2	0%	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
TRIO	7204	genome.wustl.edu	37	5	14359615	14359615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_007118.2	+1	validated	p.R789H	1.000	64	0%	39	28.2%	0	-	unknown(0)	deleterious(0.01)	-	NULL
HTR1A	3350	genome.wustl.edu	37	5	63257091	63257091	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000524.2	-1	validated	p.R152	0.977	101	0%	32	18.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PIK3R1	5295	genome.wustl.edu	37	5	67591153	67591153	+	Splice_Site	DEL	G	G	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_181523.1	+1	reviewed	e12+1	1.000	-	-	-	-	-	-	-	-	-	-
PIK3R1	5295	genome.wustl.edu	37	5	67592081	67592082	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_181523.1	+1	reviewed	p.K633fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TMEM171	134285	genome.wustl.edu	37	5	72419394	72419394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_173490.6	+1	validated	p.A65V	0.000	201	0%	100	28%	0	-	benign(0.06)	deleterious(0.03)	neutral(0.368)	NULL
THBS4	7060	genome.wustl.edu	37	5	79375825	79375825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003248.4	+1	reviewed	p.S870F	1.000	216	0%	92	28.3%	4	0%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl
VCAN	1462	genome.wustl.edu	37	5	82833391	82833392	+	Frame_Shift_Del	DEL	AG	AG	-	rs16900528	byCluster;byFrequency;by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004385.4	+1	reviewed	p.D1526fs	0.000:0.002	-	-	-	-	-	-	-	-	-	NULL
GDF9	2661	genome.wustl.edu	37	5	132197524	132197524	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005260.3	-1	reviewed	p.P374	0.034	101	0%	46	26.1%	0	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501
IK	3550	genome.wustl.edu	37	5	140032593	140032594	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006083.3	+1	reviewed	p.R93fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RED_N
PCDHA8	56140	genome.wustl.edu	37	5	140222720	140222720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018911.2	+1	reviewed	p.A605V	1.000	73	0%	45	24.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140228843	140228843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_031857.1	+1	reviewed	p.V255I	0.000	194	0%	161	19.9%	0	-	benign(0.321)	tolerated(0.08)	neutral(0.400)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHB6	56130	genome.wustl.edu	37	5	140531269	140531269	+	Silent	SNP	C	C	T	rs34727235		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018939.2	+1	reviewed	p.D477	0.993	86	0%	91	27.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140558007	140558007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_019120.2	+1	reviewed	p.S131Y	0.582	154	0%	110	20%	0	-	possibly_damaging(0.761)	deleterious(0.03)	deleterious(0.646)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHGB4	8641	genome.wustl.edu	37	5	140767695	140767695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003736.2	+1	reviewed	p.G82R	1.000	282	0%	157	16.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140779638	140779638	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018925.2	+1	reviewed	p.P648	0.976	114	0%	62	25.8%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NR3C1	2908	genome.wustl.edu	37	5	142780187	142780187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001024094.1	-1	reviewed	p.A73V	0.158	154	0%	77	24.7%	0	-	benign(0.004)	tolerated(0.78)	neutral(0.001)	HMMPfam_GCR
DRD1	1812	genome.wustl.edu	37	5	174869336	174869336	+	Missense_Mutation	SNP	G	G	A	rs182894202	by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000794.3	-1	reviewed	p.P256L	0.811	217	0%	154	24.7%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARL10	285598	genome.wustl.edu	37	5	175798760	175798760	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_173664.4	+1	validated	p.Q199	1.000	165	0%	89	36%	0	-	-	-	-	HMMPfam_Arf,superfamily_SSF52540
F12	2161	genome.wustl.edu	37	5	176832986	176832987	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000505.3	-1	reviewed	p.R66fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Kringle-like
GRM6	2916	genome.wustl.edu	37	5	178413379	178413379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000843.3	-1	reviewed	p.V626I	1.000	65	0%	36	36.1%	0	-	benign(0.018)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_3
FLT4	2324	genome.wustl.edu	37	5	180051062	180051062	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_182925.4	-1	reviewed	e11-1	1.000	107	0%	36	27.8%	0	-	-	-	-	-
HIVEP1	3096	genome.wustl.edu	37	6	12164223	12164223	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002114.2	+1	validated	p.A2562	0.346	285	0%	156	20.5%	10	0%	-	-	-	NULL
HIST1H3I	8354	genome.wustl.edu	37	6	27839723	27839723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003533.2	-1	reviewed	p.D124G	1.000	227	0%	99	28.3%	0	-	benign(0)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
MICB	4277	genome.wustl.edu	37	6	31477680	31477680	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005931.3	+1	reviewed	p.G382	0.000	168	0%	79	32.9%	0	-	-	-	-	NULL
BAG6	7917	genome.wustl.edu	37	6	31610655	31610655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004639.3	-1	reviewed	p.A635V	1.000	81	0%	33	33.3%	15	20%	possibly_damaging(0.606)	tolerated(0.07)	deleterious(0.529)	NULL
PRICKLE4	29964	genome.wustl.edu	37	6	41751963	41751963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_013397.5	+1	validated	p.P76L	0.992	311	0%	159	18.9%	3	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PET
SLC35B2	347734	genome.wustl.edu	37	6	44222739	44222740	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_178148.2	-1	validated	p.H334fs	0.989:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE
KLHL31	401265	genome.wustl.edu	37	6	53519578	53519578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001003760.4	-1	validated	p.R165W	1.000	262	0%	171	29.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
HMGCLL1	54511	genome.wustl.edu	37	6	55360225	55360225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_019036.2	-1	validated	p.A293T	1.000	207	0%	98	27.6%	1	0%	benign(0.334)	deleterious(0.01)	deleterious(0.511)	HMMPfam_HMGL-like,superfamily_Aldolase
COL19A1	1310	genome.wustl.edu	37	6	70639325	70639325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001858.4	+1	reviewed	p.I133M	0.000	264	0%	87	28.7%	0	-	unknown(0)	deleterious(0.01)	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
C6orf221	154288	genome.wustl.edu	37	6	74073392	74073392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001017361.2	+1	validated	p.G155R	0.000	95	0%	50	24%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
COL12A1	1303	genome.wustl.edu	37	6	75814964	75814964	+	Silent	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004370.5	-1	reviewed	p.C2741	0.971	176	0%	60	28.3%	22	68.1%	-	-	-	NULL
SENP6	26054	genome.wustl.edu	37	6	76405553	76405553	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000503501	+1	known	p.T319M	0.963	122	0%	87	25.3%	9	11.1%	-	-	-	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
MYO6	4646	genome.wustl.edu	37	6	76566844	76566844	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004999.3	+1	reviewed	p.N418	0.996	371	0%	199	38.2%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100288198	100288198	genome.wustl.edu	37	6	79944366	79944366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	XM_002342644.1	+1	model	p.S30P	0.993	87	0%	67	31.3%	18	44.4%	-	-	-	NULL
LOC728666	728666	genome.wustl.edu	37	6	126965095	126965095	+	RNA	SNP	C	C	T	rs183625044	by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	XR_015645.3	+1	model	NULL	0.997	260	0%	168	25%	34	0%	-	-	-	-
TMEM200A	114801	genome.wustl.edu	37	6	130761908	130761908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_052913.2	+1	provisional	p.R114H	0.989	186	0%	90	23.3%	1	0%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_DUF2371
LOC285735	285735	genome.wustl.edu	37	6	133427286	133427286	+	RNA	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NR_026969.1	+1	predicted	NULL	0.000	268	0%	56	16.1%	0	-	-	-	-	-
HBS1L	10767	genome.wustl.edu	37	6	135358037	135358037	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001145207.1	-1	reviewed	p.L520	0.616	188	0%	114	39.5%	1	100%	-	-	-	NULL
UTRN	7402	genome.wustl.edu	37	6	144837409	144837409	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_007124.2	+1	reviewed	p.T1763	0.000	168	0%	86	29.1%	0	-	-	-	-	NULL
SASH1	23328	genome.wustl.edu	37	6	148865684	148865684	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015278.3	+1	validated	p.P1026	0.000	20	0%	18	27.8%	0	-	-	-	-	NULL
C6orf72	116254	genome.wustl.edu	37	6	149911935	149911935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_138785.3	+1	predicted	p.E318D	0.998	267	0%	202	27.7%	57	43.8%	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
C6orf97	80129	genome.wustl.edu	37	6	151917592	151917592	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_025059.3	+1	validated	p.N530	0.998	119	0%	34	35.3%	1	0%	-	-	-	superfamily_Prefoldin
ESR1	2099	genome.wustl.edu	37	6	152382210	152382210	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000427531	+1	known	p.C345Y	0.987	353	0%	121	24.8%	7	14.2%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
SYNE1	23345	genome.wustl.edu	37	6	152577888	152577888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_182961.2	-1	reviewed	p.P6329S	1.000	171	0%	71	26.8%	1	0%	benign(0.003)	tolerated(0.51)	neutral(0.009)	superfamily_Spectrin repeat
HEATR2	54919	genome.wustl.edu	37	7	780511	780511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017802.3	+1	validated	p.R279H	1.000	180	0%	92	20.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PAPOLB	56903	genome.wustl.edu	37	7	4901279	4901279	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020144.4	-1	validated	p.E55*	1.000	116	0.9%	91	29.7%	0	-	-	-	-	HMMPfam_PAP_central,superfamily_SSF81301
ZNF853	54753	genome.wustl.edu	37	7	6661327	6661327	+	Silent	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017560.1	+1	provisional	p.L235	0.022	166	0%	127	29.1%	2	100%	-	-	-	NULL
ICA1	3382	genome.wustl.edu	37	7	8196732	8196732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000407906	-1	known	p.E273G	0.010	272	0%	115	20%	0	-	benign(0.15)	deleterious(0.03)	neutral(0.378)	NULL
NXPH1	30010	genome.wustl.edu	37	7	8791278	8791278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152745.2	+1	reviewed	p.S232F	1.000	119	0%	41	29.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neurexophilin
SCRN1	9805	genome.wustl.edu	37	7	30008541	30008541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001145514.1	-1	reviewed	p.P68L	0.037	268	0%	97	22.7%	1	0%	benign(0.002)	tolerated(0.27)	neutral(0.034)	NULL
IKZF1	10320	genome.wustl.edu	37	7	50467717	50467717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000331340	+1	known	p.A318T	1.000	15	0%	12	50%	0	-	benign(0.038)	deleterious(0.01)	neutral(0.408)	NULL
PCLO	27445	genome.wustl.edu	37	7	82453604	82453605	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_033026.5	-1	validated	p.P4849fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SEMA3A	10371	genome.wustl.edu	37	7	83640536	83640536	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006080.2	-1	reviewed	p.P296	0.728	348	0%	171	35.7%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
STEAP4	79689	genome.wustl.edu	37	7	87912429	87912429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024636.2	-1	validated	p.R171C	0.688	298	0%	98	20.4%	0	-	benign(0.083)	deleterious(0)	neutral(0.451)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
AKAP9	10142	genome.wustl.edu	37	7	91700277	91700277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005751.4	+1	reviewed	p.V2189A	1.000	170	0.6%	119	33.6%	1	0%	benign(0.02)	tolerated(0.84)	neutral(0.002)	NULL
COL1A2	1278	genome.wustl.edu	37	7	94058603	94058603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000089.3	+1	reviewed	p.C1272Y	1.000	280	0%	100	28%	1407	16.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_COLFI,HMMSmart_SM00038
ASB4	51666	genome.wustl.edu	37	7	95166903	95166904	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016116.1	+1	reviewed	p.F374fs	0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
SPDYE3	441272	genome.wustl.edu	37	7	99917598	99917598	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001004351.4	+1	validated	p.R168	0.016	144	0%	64	51.6%	8	12.5%	-	-	-	NULL
PRKRIP1	79706	genome.wustl.edu	37	7	102045101	102045101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024653.3	+1	validated	p.E121D	0.999	90	0%	51	19.6%	14	28.5%	unknown(0)	tolerated(0.06)	-	HMMPfam_DUF1168
ST7	7982	genome.wustl.edu	37	7	116776208	116776208	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_021908.2	+1	reviewed	p.Q262*	1.000	196	0%	48	20.8%	3	0%	-	-	-	HMMPfam_ST7
FLNC	2318	genome.wustl.edu	37	7	128493849	128493849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001458.4	+1	reviewed	p.A2148T	1.000	62	0%	25	28%	1	0%	possibly_damaging(0.928)	deleterious(0.02)	deleterious(0.758)	NULL
TTC26	79989	genome.wustl.edu	37	7	138864318	138864318	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024926.2	+1	validated	e15-2	0.998	713	0%	385	24.9%	0	-	-	-	-	-
ARHGEF5	7984	genome.wustl.edu	37	7	144061061	144061061	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005435.3	+1	reviewed	p.P433	0.000	129	0%	85	25.9%	0	-	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151921110	151921110	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_170606.2	-1	reviewed	p.Q1105*	1.000	263	0%	102	18.6%	2	0%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
XKR6	286046	genome.wustl.edu	37	8	10755749	10755749	+	Missense_Mutation	SNP	C	C	T	rs150757726	by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_173683.3	-1	provisional	p.V547I	1.000	36	0%	21	33.3%	0	-	benign(0.014)	tolerated(0.29)	neutral(0.030)	NULL
SLC35G5	83650	genome.wustl.edu	37	8	11188883	11188883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_054028.1	+1	reviewed	p.R90C	0.827	434	0%	193	28%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_DUF6,superfamily_SSF103481
NEIL2	252969	genome.wustl.edu	37	8	11628987	11628987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001135746.1	+1	validated	p.H11Y	1.000	351	0%	107	25.2%	3	0%	probably_damaging(0.963)	tolerated(0.11)	deleterious(0.677)	HMMPfam_Fapy_DNA_glyco
C8orf80	389643	genome.wustl.edu	37	8	27913553	27913553	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001010906.1	-1	provisional	p.R379*	1.000	381	0.3%	194	26.3%	0	-	-	-	-	NULL
ZNF395	55893	genome.wustl.edu	37	8	28209226	28209228	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018660.2	-1	validated	p.A341in_frame_del	0.082:0.295:0.411	-	-	-	-	-	-	-	-	-	NULL
KIF13B	23303	genome.wustl.edu	37	8	28929186	28929186	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015254.3	-1	validated	p.A1723	0.011	24	0%	13	30.8%	2	0%	-	-	-	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain
ANK1	286	genome.wustl.edu	37	8	41526001	41526001	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001142446.1	-1	reviewed	p.T1767	0.000	161	0%	88	30.7%	0	-	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41839358	41839358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001099412.1	-1	validated	p.A275V	1.000	188	0%	43	25.6%	1	0%	unknown(0)	deleterious(0)	-	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
CHRNB3	1142	genome.wustl.edu	37	8	42587098	42587098	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000749.3	+1	validated	p.G216	0.000	96	0%	75	20%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
PRKDC	5591	genome.wustl.edu	37	8	48855904	48855904	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000314191	-1	known	p.L277	0.873	160	0%	133	24.8%	1	0%	-	-	-	superfamily_ARM repeat
ST18	9705	genome.wustl.edu	37	8	53045804	53045804	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014682.2	-1	validated	p.H786	1.000	207	0%	73	21.9%	0	-	-	-	-	HMMPfam_zf-C2HC,superfamily_SSF103637
JPH1	56704	genome.wustl.edu	37	8	75227412	75227412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020647.2	-1	reviewed	p.A275T	1.000	233	0%	114	22.8%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77764113	77764113	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024721.4	+1	validated	p.S1607	0.996	141	0%	84	28.6%	0	-	-	-	-	NULL
MRPS28	28957	genome.wustl.edu	37	8	80831266	80831266	+	Silent	SNP	T	T	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014018.2	-1	reviewed	p.G171	0.995	468	0%	168	31%	49	51%	-	-	-	HMMPfam_MRP-S35
TMEM67	91147	genome.wustl.edu	37	8	94792911	94792911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_153704.5	+1	reviewed	p.G269*	0.990	525	0%	262	31.3%	0	-	-	-	-	HMMPfam_Meckelin
RNF19A	25897	genome.wustl.edu	37	8	101299857	101299857	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015435.3	-1	reviewed	p.R182	0.983	248	0%	141	22.7%	2	0%	-	-	-	superfamily_RING/U-box
SLC25A32	81034	genome.wustl.edu	37	8	104412761	104412761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_030780.3	-1	validated	p.G276S	0.679	279	0%	117	24.8%	3	33.3%	benign(0)	tolerated(0.9)	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
MTBP	27085	genome.wustl.edu	37	8	121457794	121457826	+	In_Frame_Del	DEL	GGTGTCGTCGGGTGAGGGTACTGAGAATCAGCC	GGTGTCGTCGGGTGAGGGTACTGAGAATCAGCC	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GGTGTCGTCGGGTGAGGGTACTGAGAATCAGCC	GGTGTCGTCGGGTGAGGGTACTGAGAATCAGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022045.3	+1	provisional	p.VSSGEGTENQP29in_frame_del	0.000:0.000:0.000:0.000:0.001:0.004:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.040:0.040:0.037:0.043:0.068:0.001:0.000:0.000:0.002:0.009:0.010:0.003:0.006:0.004:0.001:0.017:0.022:0.510:0.673:0.665	-	-	-	-	-	-	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32631849	32631849	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_153809.2	-1	provisional	p.R1243	0.999	495	0%	207	25.1%	0	-	-	-	-	NULL
GALT	2592	genome.wustl.edu	37	9	34650407	34650407	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000155.2	+1	reviewed	p.H367	0.492	205	0%	94	13.8%	12	0%	-	-	-	HMMPfam_GalP_UDP_tr_C,superfamily_HIT-like
KLF9	687	genome.wustl.edu	37	9	73028002	73028002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001206.2	-1	reviewed	p.M93T	0.997	122	0%	48	33.3%	5	0%	benign(0.002)	tolerated(0.74)	neutral(0.002)	NULL
C9orf79	286234	genome.wustl.edu	37	9	90502147	90502147	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_178828.4	+1	validated	p.T915	0.000	75	0%	38	21.1%	0	-	-	-	-	NULL
CTSL2	1515	genome.wustl.edu	37	9	99797041	99797041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001333.2	-1	reviewed	p.S291L	0.001	452	0%	285	29.5%	167	47.9%	probably_damaging(0.954)	tolerated(0.34)	neutral(0.421)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
GTF3C5	9328	genome.wustl.edu	37	9	135919158	135919158	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001122823.1	+1	validated	p.G139	0.001	108	0.9%	40	42.5%	16	37.5%	-	-	-	HMMPfam_Tau95
COL5A1	1289	genome.wustl.edu	37	9	137593017	137593017	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000093.3	+1	reviewed	p.K164	1.000	178	0%	105	30.5%	0	-	-	-	-	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
C9orf69	90120	genome.wustl.edu	37	9	139008666	139008666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152833.2	-1	validated	p.P52L	0.000	29	0.000	8	0.500	3	33.3%	-	-	-	NULL
C9orf86	55684	genome.wustl.edu	37	9	139733725	139733725	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024718.4	+1	validated	p.T515	0.000	58	0%	25	36%	39	20.5%	-	-	-	NULL
LARP4B	23185	genome.wustl.edu	37	10	871078	871078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015155.1	-1	provisional	p.A471T	0.918	252	0%	151	26.5%	1	0%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26436439	26436439	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017433.4	+1	reviewed	p.S862	0.433	373	0%	90	25.6%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
FAM21C	253725	genome.wustl.edu	37	10	46235668	46235668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015262.2	+1	validated	p.R168W	0.998	436	0%	250	12.8%	1	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
IPMK	253430	genome.wustl.edu	37	10	60027273	60027273	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152230.3	-1	provisional	p.P33	0.971	23	0%	10	40%	0	-	-	-	-	NULL
ARID5B	84159	genome.wustl.edu	37	10	63851484	63851484	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032199.2	+1	validated	p.H754fs	0.953	-	-	-	-	-	-	-	-	-	NULL
ZNF365	22891	genome.wustl.edu	37	10	64136551	64136551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_199451.2	+1	reviewed	p.A200V	0.997	82	0%	49	30.6%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
PPA1	5464	genome.wustl.edu	37	10	71973297	71973297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_021129.3	-1	reviewed	p.A145T	1.000	310	0%	138	26.8%	190	37.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pyrophosphatase,superfamily_Pyrophosphatase
USP54	159195	genome.wustl.edu	37	10	75276158	75276158	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152586.3	-1	provisional	p.T1342	0.000	177	0%	60	36.7%	1	0%	-	-	-	NULL
ENSG00000250779	0	genome.wustl.edu	37	10	75871654	75871654	+	RNA	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000506015	-1	novel	NULL	1.000	130	0%	35	20%	0	-	-	-	-	-
PTEN	5728	genome.wustl.edu	37	10	89692791	89692791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000371953	+1	known	p.D92G	1.000	453	0%	188	25.5%	17	52.9%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692964	89692964	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000371953	+1	known	p.E150*	1.000	251	0%	119	30.3%	11	9%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
ARHGAP19	84986	genome.wustl.edu	37	10	98994992	98994992	+	Silent	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032900.4	-1	validated	p.S422	1.000	242	0%	93	26.9%	1	0%	-	-	-	NULL
BTRC	8945	genome.wustl.edu	37	10	103281473	103281473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_033637.2	+1	reviewed	p.K134N	1.000	309	0%	201	20.4%	1	100%	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	NULL
ACTR1A	10121	genome.wustl.edu	37	10	104241858	104241858	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005736.3	-1	reviewed	p.I275	1.000	191	0%	104	21.2%	63	17.4%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PNLIP	5406	genome.wustl.edu	37	10	118313312	118313312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000936.2	+1	reviewed	p.A178V	0.996	105	0%	49	20.4%	0	-	benign(0.258)	tolerated(0.16)	neutral(0.086)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
TIAL1	7073	genome.wustl.edu	37	10	121347664	121347665	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001033925.1	-1	reviewed	p.E43fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
FGFR2	2263	genome.wustl.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	rs121913476		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022970.3	-1	reviewed	p.N550K	1.000	473	0%	247	26.7%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
MKI67	4288	genome.wustl.edu	37	10	129910413	129910413	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002417.4	-1	reviewed	p.S651	0.352	189	0%	95	23.2%	2	50%	-	-	-	NULL
ZNF511	118472	genome.wustl.edu	37	10	135123755	135123755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_145806.2	+1	provisional	p.A173T	0.001	90	0%	48	20.8%	92	36.9%	benign(0.01)	tolerated(0.51)	neutral(0.009)	NULL
PHRF1	57661	genome.wustl.edu	37	11	582050	582050	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020901.2	+1	validated	p.A61	0.000	186	0%	109	24.8%	0	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1261480	1261480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002458.1	+1	validated	p.G1285D	0.997	78	0%	37	35.1%	4	50%	probably_damaging(0.976)	-	-	NULL
TRPM5	29850	genome.wustl.edu	37	11	2434737	2434737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014555.3	-1	validated	p.A658T	0.114	50	0%	17	35.3%	0	-	benign(0.206)	tolerated(0.08)	neutral(0.320)	NULL
CYP2R1	120227	genome.wustl.edu	37	11	14901946	14901946	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024514.4	-1	reviewed	p.L246	0.999	184	0%	58	31%	5	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
KCNC1	3746	genome.wustl.edu	37	11	17793324	17793324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001112741.1	+1	reviewed	p.R228H	0.988	325	0%	181	25.4%	0	-	benign(0.222)	tolerated(0.27)	neutral(0.056)	superfamily_Voltage-gated potassium channels
HIPK3	10114	genome.wustl.edu	37	11	33360390	33360390	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005734.3	+1	validated	e4+1	1.000	225	0%	111	27.9%	0	-	-	-	-	-
OR5D16	390144	genome.wustl.edu	37	11	55606711	55606711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005496.1	+1	provisional	p.A162T	0.000	390	0%	104	32.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10AG1	282770	genome.wustl.edu	37	11	55735430	55735430	+	Silent	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005491.1	-1	provisional	p.C170	1.000	214	0%	108	22.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5AS1	219447	genome.wustl.edu	37	11	55798533	55798533	+	Silent	SNP	A	A	G	rs17528803	byCluster;byFrequency;by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001001921.1	+1	provisional	p.V213	0.044	354	0%	107	23.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8U1	219417	genome.wustl.edu	37	11	56143641	56143641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005204.1	+1	provisional	p.D181G	0.367	399	0%	74	20.3%	1	0%	probably_damaging(0.999)	tolerated(0.38)	deleterious(0.508)	HMMPfam_7tm_1,superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56511062	56511062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005284.1	-1	provisional	p.F76V	1.000	187	0%	105	29.5%	0	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	HMMPfam_7tm_1,superfamily_SSF81321
CCDC88B	283234	genome.wustl.edu	37	11	64111912	64111913	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032251.5	+1	reviewed	p.L633fs	0.054:0.000	-	-	-	-	-	-	-	-	-	NULL
PYGM	5837	genome.wustl.edu	37	11	64525931	64525931	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005609.2	-1	reviewed	p.N134	0.978	123	0%	56	37.5%	0	-	-	-	-	HMMPfam_Phosphorylase,superfamily_SSF53756
SPTBN2	6712	genome.wustl.edu	37	11	66469057	66469057	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006946.2	-1	reviewed	p.H938	1.000	320	0%	171	31%	1	100%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PC	5091	genome.wustl.edu	37	11	66617151	66617151	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000920.3	-1	reviewed	p.T1026	0.999	142	0%	67	31.3%	6	33.3%	-	-	-	HMMPfam_PYC_OADA,superfamily_SSF89000
RPS6KB2	6199	genome.wustl.edu	37	11	67202510	67202510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003952.2	+1	reviewed	p.P440L	0.034	85	0%	37	13.5%	71	39.4%	unknown(0)	deleterious(0.01)	-	NULL
PTPRCAP	5790	genome.wustl.edu	37	11	67203361	67203361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005608.2	-1	reviewed	p.T155M	0.000	45	0%	12	41.7%	210	2.8%	possibly_damaging(0.812)	deleterious(0.05)	deleterious(0.651)	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70118320	70118320	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003626.2	+1	reviewed	p.G14	0.053	132	0%	59	22%	1	100%	-	-	-	NULL
CTTN	2017	genome.wustl.edu	37	11	70281136	70281136	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005231.3	+1	reviewed	p.G507	0.540	85	0%	34	32.4%	41	39%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
RPS3	6188	genome.wustl.edu	37	11	75111796	75111796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005.3	+1	reviewed	p.A30D	1.000	328	0%	235	26.4%	1127	29.4%	possibly_damaging(0.51)	deleterious(0.01)	deleterious(0.577)	superfamily_Prokaryotic type KH domain (KH-domain type II)
MMP3	4314	genome.wustl.edu	37	11	102713246	102713246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002422.3	-1	reviewed	p.K139E	0.936	478	0%	172	29.1%	3	0%	benign(0.002)	tolerated(0.16)	neutral(0.059)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
C11orf92	399948	genome.wustl.edu	37	11	111167006	111167006	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_207429.2	-1	validated	p.S66	0.379	101	0%	61	18%	1	0%	-	-	-	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117391875	117391875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_020693.2	-1	provisional	p.A455T	0.999	72	0%	30	46.7%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MPZL3	196264	genome.wustl.edu	37	11	118110954	118110954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_198275.1	-1	provisional	p.R71H	0.991	326	0%	156	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OR8B2	26595	genome.wustl.edu	37	11	124252706	124252706	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005468.1	-1	provisional	p.L178	0.628	192	0%	76	31.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PTPN6	5777	genome.wustl.edu	37	12	7066906	7066906	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_080549.3	+1	reviewed	p.T388	0.000	127	0%	63	30.2%	50	34%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
CLEC4E	26253	genome.wustl.edu	37	12	8688736	8688736	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014358.2	-1	reviewed	p.V146	0.000	269	0%	146	30.1%	7	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
A2M	2	genome.wustl.edu	37	12	9246118	9246118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000014.4	-1	reviewed	p.T728M	0.146	257	0%	154	28.6%	51	0%	possibly_damaging(0.66)	tolerated(0.11)	deleterious(0.505)	NULL
LRP6	4040	genome.wustl.edu	37	12	12279775	12279775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002336.2	-1	reviewed	p.G1388R	1.000	359	0%	125	20.8%	5	0%	possibly_damaging(0.933)	tolerated(0.19)	neutral(0.428)	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14769647	14769647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004963.3	-1	validated	p.V964M	0.948	315	0%	64	18.8%	0	-	benign(0.036)	tolerated(0.12)	neutral(0.263)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
GYS2	2998	genome.wustl.edu	37	12	21693461	21693461	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_021957.3	-1	reviewed	p.C564	1.000	271	0.4%	102	28.4%	0	-	-	-	-	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
PPFIBP1	8496	genome.wustl.edu	37	12	27844850	27844850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003622.2	+1	reviewed	p.R952W	1.000	445	0%	223	23.8%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC100129218	100129218	genome.wustl.edu	37	12	52910510	52910510	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	XM_001718439.2	+1	model	p.Q130*	0.433	158	0%	77	36.4%	6	66.6%	-	-	-	NULL
LRP1	4035	genome.wustl.edu	37	12	57572741	57572741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002332.2	+1	reviewed	p.R1559W	1.000	122	0.8%	56	30.4%	0	-	probably_damaging(0.967)	deleterious(0.03)	deleterious(0.773)	HMMSmart_SM00181,superfamily_EGF/Laminin
LRP1	4035	genome.wustl.edu	37	12	57573308	57573308	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002332.2	+1	reviewed	p.N1645	0.258	92	0%	39	28.2%	1	0%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRIG3	121227	genome.wustl.edu	37	12	59280595	59280595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_153377.3	-1	provisional	p.R390Q	0.004	595	0.2%	218	20.6%	1	0%	benign(0.007)	tolerated(0.31)	neutral(0.027)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
DYRK2	8445	genome.wustl.edu	37	12	68052153	68052153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006482.2	+1	reviewed	p.G489D	1.000	100	0%	41	26.8%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SYT1	6857	genome.wustl.edu	37	12	79693187	79693187	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001135805.1	+1	validated	p.G222	1.000	317	0%	111	23.4%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SCYL2	55681	genome.wustl.edu	37	12	100717365	100717365	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017988.4	+1	provisional	p.N486	1.000	383	0%	387	26.6%	1	0%	-	-	-	superfamily_ARM repeat
GIT2	9815	genome.wustl.edu	37	12	110399167	110399167	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_057169.3	-1	reviewed	p.T301	0.928	163	0%	59	35.6%	9	11.1%	-	-	-	NULL
RBM19	9904	genome.wustl.edu	37	12	114358497	114358498	+	Splice_Site	INS	-	-	GA	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016196.3	-1	reviewed	e19-2	0.977:0.777	-	-	-	-	-	-	-	-	-	-
SETD1B	23067	genome.wustl.edu	37	12	122265552	122265552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015048.1	+1	validated	p.L1779R	1.000	43	0%	32	37.5%	2	0%	unknown(0)	-	-	HMMPfam_SET
HPD	3242	genome.wustl.edu	37	12	122281717	122281718	+	Frame_Shift_Del	DEL	CT	CT	-	rs142252243	by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002150.2	-1	reviewed	p.G285fs	1.000:0.977	-	-	-	-	-	-	-	-	-	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
DNAH10	196385	genome.wustl.edu	37	12	124330623	124330623	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_207437.3	+1	validated	p.Y1794	0.968	91	0%	42	28.6%	0	-	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124358173	124358173	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_207437.3	+1	validated	p.N2500	0.833	198	0.5%	110	21.8%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
RIMBP2	23504	genome.wustl.edu	37	12	130926745	130926745	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015347.4	-1	validated	p.S367	0.854	278	0%	117	27.4%	1	100%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CHFR	55743	genome.wustl.edu	37	12	133438075	133438075	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018223.2	-1	validated	p.P214	0.007	526	0.2%	374	28.9%	5	40%	-	-	-	NULL
ATP12A	479	genome.wustl.edu	37	13	25281431	25281431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001676.5	+1	reviewed	p.D785N	1.000	356	0%	183	10.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calcium ATPase transmembrane domain M
MTUS2	23281	genome.wustl.edu	37	13	29600848	29600848	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001033602.2	+1	validated	p.P681	0.000	104	0%	47	27.7%	0	-	-	-	-	NULL
DCLK1	9201	genome.wustl.edu	37	13	36700167	36700167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004734.3	-1	validated	p.S36R	1.000	70	0%	30	26.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PROSER1	80209	genome.wustl.edu	37	13	39586969	39586969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_025138.3	-1	validated	p.P807L	1.000	140	0%	87	27.6%	10	30%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42245202	42245202	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015058.1	-1	validated	p.S1497	0.048	270	0.7%	60	35%	6	50%	-	-	-	NULL
NDFIP2	54602	genome.wustl.edu	37	13	80107522	80107522	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000465762	+1	known	p.L100P	0.779	202	0%	77	23.4%	7	28.5%	-	-	-	HMMPfam_DUF2370
COL4A1	1282	genome.wustl.edu	37	13	110813624	110813624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001845.4	-1	reviewed	p.Y1519D	1.000	257	0%	126	21.4%	142	0%	unknown(0)	tolerated(0.08)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
CDH24	64403	genome.wustl.edu	37	14	23518467	23518467	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022478.3	-1	validated	p.L577	1.000	60	0%	31	32.3%	4	50%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
MYH7	4625	genome.wustl.edu	37	14	23889188	23889188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000257.2	-1	reviewed	p.D1198N	1.000	204	0%	86	16.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
FRMD6	122786	genome.wustl.edu	37	14	52174925	52174925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001042481.1	+1	validated	p.A222T	0.986	115	0%	29	41.4%	2	0%	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_FERM_M,HMMSmart_B41,superfamily_SSF50729
JKAMP	51528	genome.wustl.edu	37	14	59954419	59954419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016475.3	+1	validated	p.A42T	0.979	410	0%	358	30.2%	6	83.3%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_DUF766
MAP3K9	4293	genome.wustl.edu	37	14	71200020	71200020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_033141.2	-1	validated	p.R703H	0.386	119	0%	72	34.7%	0	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	NULL
FAM181A	90050	genome.wustl.edu	37	14	94394866	94394866	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_138344.3	+1	predicted	p.L141	0.004	36	0%	22	27.3%	3	100%	-	-	-	NULL
NUDT14	256281	genome.wustl.edu	37	14	105643085	105643085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_177533.3	-1	validated	p.R72C	0.025	22	0%	18	38.9%	93	36.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
OCA2	4948	genome.wustl.edu	37	15	28000588	28000588	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000275.2	-1	reviewed	p.C821	0.992	301	0%	160	28.1%	0	-	-	-	-	NULL
SPTBN5	51332	genome.wustl.edu	37	15	42166107	42166107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016642.2	-1	validated	p.A1574V	0.718	91	0%	23	17.4%	0	-	benign(0.011)	tolerated(0.28)	neutral(0.032)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
TGM5	9333	genome.wustl.edu	37	15	43545072	43545072	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_201631.3	-1	reviewed	p.G249	0.000	108	0%	40	35%	0	-	-	-	-	superfamily_Cysteine proteinases
B2M	567	genome.wustl.edu	37	15	45007692	45007692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004048.2	+1	reviewed	p.V47M	0.984	421	0%	222	28.8%	3870	4.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
TNFAIP8L3	388121	genome.wustl.edu	37	15	51350428	51350428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_207381.2	-1	provisional	p.G177R	1.000	640	0%	330	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF758
MNS1	55329	genome.wustl.edu	37	15	56726358	56726358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018365.2	-1	reviewed	p.R416H	0.397	441	0.9%	182	27.5%	0	-	possibly_damaging(0.851)	deleterious(0)	deleterious(0.772)	NULL
HERC1	8925	genome.wustl.edu	37	15	64056332	64056332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003922.3	-1	reviewed	p.C330Y	1.000	99	0%	60	25%	0	-	probably_damaging(0.976)	-	-	NULL
SMAD3	4088	genome.wustl.edu	37	15	67477076	67477076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005902.3	+1	reviewed	p.R295W	1.000	251	0.4%	79	29.1%	3	33.3%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
MYO9A	4649	genome.wustl.edu	37	15	72190721	72190721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006901.2	-1	validated	p.S1375G	0.065	251	0%	85	28.2%	0	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
LOC646791	646791	genome.wustl.edu	37	15	75614500	75614500	+	RNA	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	XR_017650.3	-1	model	NULL	1.000	245	0%	284	26.8%	2	0%	-	-	-	-
CSPG4	1464	genome.wustl.edu	37	15	75975328	75975328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001897.4	-1	reviewed	p.G1502S	0.037	27	0%	16	25%	1	0%	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
MEX3B	84206	genome.wustl.edu	37	15	82336181	82336181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032246.3	-1	provisional	p.A344P	0.005	42	0%	22	22.7%	1	0%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
FURIN	5045	genome.wustl.edu	37	15	91419771	91419771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002569.2	+1	reviewed	p.P119H	0.989	220	0%	91	18.7%	4	25%	benign(0.321)	deleterious(0.03)	neutral(0.465)	superfamily_Pept_S8_S53
FAM149B2	100113400	genome.wustl.edu	37	15	97301053	97301053	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000398303	+1	known	p.S118	0.984	540	0%	370	23.2%	0	-	-	-	-	NULL
ALDH1A3	220	genome.wustl.edu	37	15	101427779	101427779	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000693.2	+1	reviewed	p.P69	0.863	83	0%	21	19%	1	0%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
LRRK1	79705	genome.wustl.edu	37	15	101597169	101597169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024652.3	+1	validated	p.R1481C	1.000	127	0%	62	30.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NDUFB10	4716	genome.wustl.edu	37	16	2011238	2011240	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004548.2	+1	validated	p.E74in_frame_del	0.711:0.817:0.876	-	-	-	-	-	-	-	-	-	HMMPfam_NDUFB10
CD19	930	genome.wustl.edu	37	16	28950036	28950036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001770.5	+1	reviewed	p.A509V	1.000	149	0%	58	27.6%	14	0%	possibly_damaging(0.46)	deleterious(0.01)	deleterious(0.556)	NULL
DOC2A	8448	genome.wustl.edu	37	16	30018406	30018406	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003586.2	-1	reviewed	p.A220	0.819	52	0%	17	23.5%	1	0%	-	-	-	superfamily_C2_CaLB
ZNF785	146540	genome.wustl.edu	37	16	30594328	30594328	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152458.5	-1	provisional	p.A257	0.000	116	0%	81	30.9%	1	100%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HSD3B7	80270	genome.wustl.edu	37	16	30999412	30999412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_025193.3	+1	reviewed	p.R340C	0.973	51	0%	33	27.3%	6	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_NAD(P)-bd
NOD2	64127	genome.wustl.edu	37	16	50744725	50744725	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022162.1	+1	reviewed	p.A301	0.141	66	0%	43	30.2%	0	-	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR97	222487	genome.wustl.edu	37	16	57719637	57719637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_170776.4	+1	validated	p.M447V	0.000	418	0%	170	30%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_2
CTCF	10664	genome.wustl.edu	37	16	67646012	67646013	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006565.2	+1	reviewed	p.T318fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CDH3	1001	genome.wustl.edu	37	16	68716324	68716324	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001793.4	+1	reviewed	p.D372	0.009	111	0%	39	33.3%	4	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TMED6	146456	genome.wustl.edu	37	16	69377359	69377359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_144676.3	-1	validated	p.R225H	1.000	409	0%	247	31.6%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_EMP24_GP25L
ZFHX3	463	genome.wustl.edu	37	16	72821545	72821545	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006885.3	-1	reviewed	p.L3544V	1.000	106	0%	42	33.3%	5	60%	unknown(0)	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
RFWD3	55159	genome.wustl.edu	37	16	74678509	74678509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018124.3	-1	validated	p.R306H	1.000	252	0.4%	111	27.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
PKD1L2	114780	genome.wustl.edu	37	16	81157275	81157275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_052892.3	-1	reviewed	p.R2155H	0.124	121	0%	58	17.2%	0	-	unknown(0)	-	-	NULL
PLCG2	5336	genome.wustl.edu	37	16	81902830	81902830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002661.2	+1	validated	p.R164Q	1.000	239	0%	138	32.6%	0	-	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	superfamily_SSF47473
PLCG2	5336	genome.wustl.edu	37	16	81925131	81925131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002661.2	+1	validated	p.A308T	0.891	176	1.1%	86	29.1%	2	0%	benign(0)	tolerated(0.64)	neutral(0.003)	superfamily_SSF47473
ZNF469	84627	genome.wustl.edu	37	16	88501107	88501107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001127464.1	+1	reviewed	p.A2382V	0.013	38	0%	27	18.5%	0	-	possibly_damaging(0.886)	tolerated(0.24)	neutral(0.384)	NULL
ZNF778	197320	genome.wustl.edu	37	16	89293540	89293540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_182531.2	+1	validated	p.V254I	0.463	108	0%	70	27.1%	0	-	benign(0.039)	deleterious(0.03)	neutral(0.366)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GEMIN4	50628	genome.wustl.edu	37	17	650033	650033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015721.2	-1	reviewed	p.R417H	0.973	84	0%	38	23.7%	3	0%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
RPA1	6117	genome.wustl.edu	37	17	1791994	1791994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002945.3	+1	validated	p.T467R	0.930	183	0%	64	28.1%	16	25%	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	HMMPfam_Rep_fac-A_C,superfamily_Nucleic acid-binding proteins
SMG6	23293	genome.wustl.edu	37	17	1989033	1989033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017575.4	-1	validated	p.R1174*	1.000	350	0.3%	166	21.1%	3	0%	-	-	-	NULL
ZMYND15	84225	genome.wustl.edu	37	17	4647999	4647999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001136046.1	+1	provisional	p.R588H	0.997	84	0%	49	28.6%	3	0%	benign(0.007)	deleterious(0.04)	neutral(0.349)	NULL
C17orf107	100130311	genome.wustl.edu	37	17	4803727	4803727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001145536.1	+1	predicted	p.R158W	0.010	40	0%	15	33.3%	1	0%	benign(0)	-	-	NULL
CAMTA2	23125	genome.wustl.edu	37	17	4876927	4876927	+	Silent	SNP	A	A	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_015099.3	-1	validated	p.A718	0.386	32	0%	13	46.2%	12	8.3%	-	-	-	HMMPfam_Ank,superfamily_Ankyrin repeat
SPDYE4	388333	genome.wustl.edu	37	17	8659749	8659749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001128076.1	-1	provisional	p.P116T	0.964	474	0%	224	26.8%	0	-	possibly_damaging(0.561)	tolerated(0.09)	deleterious(0.488)	NULL
USP43	124739	genome.wustl.edu	37	17	9631382	9631382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_153210.3	+1	validated	p.R816L	0.487	106	0%	49	32.7%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MED9	55090	genome.wustl.edu	37	17	17394702	17394702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_018019.2	+1	reviewed	p.E112K	0.999	79	0%	53	26.4%	2	100%	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	HMMPfam_CSE2
SREBF1	6720	genome.wustl.edu	37	17	17716049	17716049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005291.2	-1	reviewed	p.M1141V	1.000	29	0%	17	35.3%	24	37.5%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
FLII	2314	genome.wustl.edu	37	17	18157877	18157877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002018.2	-1	reviewed	p.T178M	1.000	50	0%	32	25%	6	16.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF52058
FBXW10	10517	genome.wustl.edu	37	17	18659390	18659390	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_031456.3	+1	validated	p.N385	1.000	628	0%	264	24.2%	0	-	-	-	-	superfamily_WD40 repeat-like,superfamily_F-box domain
SDF2	6388	genome.wustl.edu	37	17	26976113	26976113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006923.2	-1	reviewed	p.H177R	1.000	234	0%	112	28.6%	54	35.1%	possibly_damaging(0.776)	deleterious(0.05)	deleterious(0.635)	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
C1QL1	10882	genome.wustl.edu	37	17	43037706	43037706	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006688.3	-1	provisional	p.A209	0.921	249	0%	121	30.6%	3	33.3%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
FMNL1	752	genome.wustl.edu	37	17	43323674	43323674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005892.3	+1	reviewed	p.G1063V	1.000	117	0%	53	22.6%	48	2%	unknown(0)	deleterious(0)	-	HMMSmart_SM00498
TRIM37	4591	genome.wustl.edu	37	17	57109404	57109404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001005207.2	-1	reviewed	p.T601A	0.998	122	0%	96	29.2%	1	0%	benign(0)	tolerated(1)	-	NULL
CEP95	90799	genome.wustl.edu	37	17	62529261	62529263	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_138363.1	+1	provisional	p.L625in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76446422	76446422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000389840	-1	known	p.R3638C	1.000	310	0%	182	23.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYTH1	9267	genome.wustl.edu	37	17	76696434	76696434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004762.2	-1	reviewed	p.N177D	0.000	145	0%	100	36%	5	20%	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
USP36	57602	genome.wustl.edu	37	17	76802345	76802345	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_025090.3	-1	validated	p.T703	1.000	249	0.4%	123	27.6%	8	50%	-	-	-	NULL
SLC25A10	1468	genome.wustl.edu	37	17	79682747	79682747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_012140.3	+1	provisional	p.T118M	0.998	112	0%	39	15.4%	19	15.7%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
PTPRM	5797	genome.wustl.edu	37	18	7926586	7926586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001105244.1	+1	reviewed	p.R190W	1.000	202	0%	93	19.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Immunoglobulin
PTPN2	5771	genome.wustl.edu	37	18	12801980	12801982	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002828.2	-1	reviewed	p.E343in_frame_del	0.116:0.809:0.867	-	-	-	-	-	-	-	-	-	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44560056	44560056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016427.2	-1	reviewed	p.P527L	0.000	100	0%	57	29.8%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44561056	44561056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_016427.2	-1	reviewed	p.G194R	0.000	98	0%	49	32.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C18orf54	162681	genome.wustl.edu	37	18	51888209	51888209	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_173529.4	+1	validated	p.G160	0.798	193	0%	111	24.3%	0	-	-	-	-	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4219667	4219667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_133475.1	+1	provisional	p.R1028Q	1.000	49	0%	37	18.9%	2	0%	possibly_damaging(0.939)	tolerated(0.47)	neutral(0.396)	NULL
SLC25A23	79085	genome.wustl.edu	37	19	6456499	6456499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024103.2	-1	validated	p.R139C	1.000	235	0%	86	30.2%	5	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SM00054,superfamily_EF-hand
SH2D3A	10045	genome.wustl.edu	37	19	6759615	6759615	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005490.2	-1	validated	p.P162	0.000	238	0%	87	36.8%	5	40%	-	-	-	NULL
INSR	3643	genome.wustl.edu	37	19	7117197	7117197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000208.2	-1	reviewed	p.A1340V	0.514	96	0%	45	24.4%	3	0%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
ARHGEF18	23370	genome.wustl.edu	37	19	7506567	7506567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001130955.1	+1	reviewed	p.D191N	0.980	365	0%	239	30.1%	6	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
MAST1	22983	genome.wustl.edu	37	19	12958222	12958222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014975.2	+1	validated	p.G149D	1.000	77	0%	32	15.6%	1	0%	possibly_damaging(0.768)	deleterious(0.04)	deleterious(0.634)	HMMPfam_DUF1908
AKAP8L	26993	genome.wustl.edu	37	19	15508076	15508076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014371.2	-1	validated	p.H474R	1.000	129	0%	61	23%	37	32.4%	benign(0.07)	deleterious(0.01)	neutral(0.411)	HMMPfam_AKAP95
OCEL1	79629	genome.wustl.edu	37	19	17337875	17337875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024578.1	+1	provisional	p.H107Y	0.000	51	0%	34	38.2%	5	0%	benign(0.378)	tolerated(0.39)	neutral(0.137)	NULL
JAK3	3718	genome.wustl.edu	37	19	17937660	17937660	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000215.3	-1	reviewed	p.S1089	0.000	120	0%	43	30.2%	5	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
IL12RB1	3594	genome.wustl.edu	37	19	18177409	18177409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005535.1	-1	reviewed	p.G476S	0.168	225	0%	77	31.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZNF728	388523	genome.wustl.edu	37	19	23171248	23171248	+	Silent	SNP	C	C	T	rs185162295	by1000genomes	TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	XM_001726961.1	-1	model	p.S3	0.053	523	0%	159	20.1%	0	-	-	-	-	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SLC7A9	11136	genome.wustl.edu	37	19	33353428	33353428	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001126335.1	-1	reviewed	p.T181	0.000	69	0%	40	22.5%	0	-	-	-	-	HMMPfam_AA_permease
CEP89	84902	genome.wustl.edu	37	19	33450921	33450921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_032816.3	-1	validated	p.R64W	0.325	151	0%	51	23.5%	5	20%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
MLL4	9757	genome.wustl.edu	37	19	36227635	36227639	+	Frame_Shift_Del	DEL	AAAGA	AAAGA	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	AAAGA	AAAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014727.1	+1	reviewed	p.K2402fs	1.000:1.000:0.994:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39965169	39965169	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001111020.2	+1	validated	p.P945	0.011	85	0%	58	41.4%	116	31.8%	-	-	-	NULL
TRAPPC6A	79090	genome.wustl.edu	37	19	45668202	45668202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024108.1	-1	provisional	p.R74M	1.000	104	0%	18	33.3%	39	30.7%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_TRAPP
BBC3	27113	genome.wustl.edu	37	19	47725105	47725105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014417.3	-1	validated	p.L179P	1.000	100	0%	22	31.8%	20	30%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
TULP2	7288	genome.wustl.edu	37	19	49391371	49391371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003323.2	-1	validated	p.R262C	0.000	53	0%	29	31%	0	-	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
MYH14	79784	genome.wustl.edu	37	19	50753918	50753918	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001077186.1	+1	reviewed	p.D601E	1.000	76	0%	37	27%	8	75%	benign(0.009)	tolerated(0.2)	neutral(0.050)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH14	79784	genome.wustl.edu	37	19	50792862	50792862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001077186.1	+1	reviewed	p.R1608H	0.909	119	0%	48	33.3%	54	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
KLK8	11202	genome.wustl.edu	37	19	51499358	51499358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_144505.1	-1	reviewed	p.R292H	1.000	276	0%	114	34.2%	1	0%	benign(0.094)	tolerated(0.29)	neutral(0.036)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SIGLEC10	89790	genome.wustl.edu	37	19	51920120	51920120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_033130.4	-1	validated	p.A169V	0.000	274	0%	135	26.7%	3	0%	benign(0.014)	tolerated(0.64)	neutral(0.004)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
ZNF175	7728	genome.wustl.edu	37	19	52089946	52089946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_007147.2	+1	validated	p.M121T	0.002	257	0%	112	28.6%	0	-	benign(0.173)	tolerated(0.68)	neutral(0.018)	NULL
ZNF808	388558	genome.wustl.edu	37	19	53058325	53058325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001039886.3	+1	validated	p.R719M	0.000	265	0%	141	19.1%	2	50%	benign(0.016)	tolerated(0.12)	neutral(0.261)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LILRB5	10990	genome.wustl.edu	37	19	54754940	54754940	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000450632	-1	known	p.P565	0.000	333	0%	147	22.4%	10	0%	-	-	-	NULL
NLRP9	338321	genome.wustl.edu	37	19	56243953	56243953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_176820.2	-1	reviewed	p.L415H	0.028	251	0%	120	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF667	63934	genome.wustl.edu	37	19	56953762	56953762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022103.3	-1	validated	p.E201G	0.000	646	0%	244	23%	0	-	benign(0.051)	tolerated(0.06)	neutral(0.326)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF134	7693	genome.wustl.edu	37	19	58132652	58132652	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003435.3	+1	provisional	p.R389*	0.712	221	0%	105	22.9%	6	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMC2	117532	genome.wustl.edu	37	20	2539168	2539168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_080751.2	+1	validated	p.R50H	0.000	26	0%	14	35.7%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
VPS16	64601	genome.wustl.edu	37	20	2846887	2846887	+	Silent	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022575.2	+1	reviewed	p.H767	0.997	369	0%	208	29.3%	53	16.9%	-	-	-	HMMPfam_Vps16_C
RALGAPA2	57186	genome.wustl.edu	37	20	20596788	20596788	+	Silent	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000430436	-1	known	p.L346P	0.928	313	0%	133	23.3%	1	0%	-	-	-	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31369167	31369167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006892.3	+1	reviewed	p.S51P	1.000	205	0%	91	28.6%	0	-	probably_damaging(0.955)	deleterious(0.04)	deleterious(0.748)	NULL
COL9A3	1299	genome.wustl.edu	37	20	61458647	61458650	+	Splice_Site	DEL	GTAA	GTAA	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001853.3	+1	reviewed	e16+1	0.995:1.000	-	-	-	-	-	-	-	-	-	-
PPDPF	79144	genome.wustl.edu	37	20	62152696	62152696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024299.2	+1	provisional	p.A12V	1.000	6	0.000	13	0.538	220	26.8%	possibly_damaging(0.67)	deleterious(0.02)	deleterious(0.621)	NULL
UCKL1	54963	genome.wustl.edu	37	20	62571797	62571797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_017859.2	-1	validated	p.H448Q	1.000	43	0%	21	28.6%	26	46.1%	benign(0.119)	deleterious(0.04)	neutral(0.358)	superfamily_PRTase-like
TCEA2	6919	genome.wustl.edu	37	20	62701931	62701931	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003195.4	+1	reviewed	p.T254	0.012	54	1.9%	21	28.6%	103	31%	-	-	-	superfamily_Zinc beta-ribbon
USP16	10600	genome.wustl.edu	37	21	30411440	30411440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001032410.1	+1	reviewed	p.V276M	0.999	191	0%	82	20.7%	5	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_UCH,superfamily_Cysteine proteinases
ZNF295	49854	genome.wustl.edu	37	21	43412988	43412988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001098402.1	-1	validated	p.R406H	1.000	231	0%	122	28.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CECR2	27443	genome.wustl.edu	37	22	18022654	18022654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000400573	+1	known	p.P919L	1.000	89	0%	26	15.4%	0	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	NULL
ZNF74	7625	genome.wustl.edu	37	22	20760232	20760234	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003426.2	+1	validated	p.F305in_frame_del	0.998:0.999:0.991	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PI4KA	5297	genome.wustl.edu	37	22	21075645	21075645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_058004.2	-1	reviewed	p.Q1628P	1.000	230	0%	114	22.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
LZTR1	8216	genome.wustl.edu	37	22	21346097	21346097	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006767.3	+1	reviewed	p.V324	0.983	44	0%	12	41.7%	1	0%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
TTC28	23331	genome.wustl.edu	37	22	28503109	28503109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001145418.1	-1	validated	p.Q908H	1.000	214	0%	91	41.8%	0	-	probably_damaging(0.976)	tolerated(0.13)	deleterious(0.670)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
SFI1	9814	genome.wustl.edu	37	22	31985518	31985518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001007467.1	+1	validated	p.R500H	0.574	90	0%	39	12.8%	2	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
NOL12	79159	genome.wustl.edu	37	22	38084897	38084897	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_024313.2	+1	validated	p.T93	0.053	133	0%	56	16.1%	45	40%	-	-	-	HMMPfam_Nop25
FBLN1	2192	genome.wustl.edu	37	22	45938048	45938048	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006486.2	+1	reviewed	p.C360	0.002	134	0%	54	33.3%	641	52.8%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
TTC38	55020	genome.wustl.edu	37	22	46677540	46677540	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000422713	+1	known	p.S171L	0.001	222	0%	99	24.2%	5	20%	-	-	-	superfamily_TPR-like
PPP6R2	9701	genome.wustl.edu	37	22	50879250	50879250	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014678.3	+1	validated	e19-1	0.136	93	0%	34	20.6%	0	-	-	-	-	-
CSF2RA	1438	genome.wustl.edu	37	X	1404676	1404676	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_006140.4	+1	reviewed	p.R28*	0.000	235	0%	160	30%	1	0%	-	-	-	NULL
P2RY8	286530	genome.wustl.edu	37	X	1585131	1585131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_178129.4	-1	reviewed	p.M107I	1.000	238	0%	125	26.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
POLA1	5422	genome.wustl.edu	37	X	24712104	24712104	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000379068	+1	known	p.C9fs	0.000	-	-	-	-	-	-	-	-	-	NULL
LOC389842	389842	genome.wustl.edu	37	X	25664149	25664149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	XM_372200.7	-1	model	p.C99Y	1.000	89	0%	53	26.4%	1	0%	-	-	-	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
MAGEB3	4114	genome.wustl.edu	37	X	30254804	30254804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002365.4	+1	reviewed	p.L255F	0.041	303	0%	180	32.8%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_MAGE
TAB3	257397	genome.wustl.edu	37	X	30872892	30872892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_152787.3	-1	reviewed	p.P297H	1.000	451	0%	178	23.6%	2	0%	benign(0.076)	tolerated(0.36)	neutral(0.026)	NULL
BCOR	54880	genome.wustl.edu	37	X	39921480	39921480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001123385.1	-1	reviewed	p.R1447H	1.000	270	0%	111	22.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
USP11	8237	genome.wustl.edu	37	X	47099826	47099826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004651.3	+1	reviewed	p.D263N	0.982	308	0%	83	33.7%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1055
FOXP3	50943	genome.wustl.edu	37	X	49113237	49113239	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_014009.3	-1	reviewed	p.K206in_frame_del	0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1
DGAT2L6	347516	genome.wustl.edu	37	X	69424938	69424938	+	Silent	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_198512.1	+1	provisional	p.Q332	0.807	215	0%	64	21.9%	0	-	-	-	-	HMMPfam_DAGAT
P2RY4	5030	genome.wustl.edu	37	X	69478836	69478836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_002565.3	-1	reviewed	p.C213	0.997	132	0%	48	29.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TAF1	6872	genome.wustl.edu	37	X	70597000	70597000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_004606.3	+1	reviewed	p.P245S	1.000	266	0.4%	98	24.5%	0	-	possibly_damaging(0.736)	tolerated(0.12)	deleterious(0.530)	NULL
NAP1L2	4674	genome.wustl.edu	37	X	72433664	72433666	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_021963.2	-1	reviewed	p.E221in_frame_del	0.004:0.003:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_NAP
BMP2KL	347359	genome.wustl.edu	37	X	73406645	73406645	+	Silent	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000414251	+1	known	p.P295L	0.952	40	0%	22	27.3%	0	-	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76764013	76764013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000489.3	-1	reviewed	p.T2432I	1.000	311	0%	149	26.2%	11	0%	possibly_damaging(0.753)	deleterious(0.04)	deleterious(0.625)	NULL
PGAM4	441531	genome.wustl.edu	37	X	77225100	77225100	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001029891.2	-1	reviewed	p.G12	1.000	96	0%	50	14%	0	-	-	-	-	PatternScan_PG_MUTASE,HMMPfam_PGAM,superfamily_SSF53254
ARMCX5	64860	genome.wustl.edu	37	X	101857764	101857764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_022838.3	+1	validated	p.L232Q	0.970	321	0%	115	31.3%	4	0%	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	NULL
TCEAL4	79921	genome.wustl.edu	37	X	102841601	102841601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000372629	+1	known	p.D143N	0.613	287	0%	283	25.8%	100	62%	benign(0.159)	deleterious(0.04)	neutral(0.363)	NULL
NRK	203447	genome.wustl.edu	37	X	105125773	105125773	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_198465.2	+1	validated	e4+1	0.948	405	0%	95	21.1%	0	-	-	-	-	-
TEX13B	56156	genome.wustl.edu	37	X	107224930	107224930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_031273.2	-1	reviewed	p.R143L	0.043	147	0%	39	28.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
VSIG1	340547	genome.wustl.edu	37	X	107316575	107316575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_182607.4	+1	reviewed	p.C222fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF48726
IRS4	8471	genome.wustl.edu	37	X	107975873	107975873	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_003604.2	-1	reviewed	p.D1234	0.000	196	0%	110	28.2%	0	-	-	-	-	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114426819	114426819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001145346.1	+1	validated	p.R939W	0.648	32	0%	17	47.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
STAG2	10735	genome.wustl.edu	37	X	123202493	123202493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001042749.1	+1	validated	p.T782I	1.000	267	0%	127	33.1%	6	66.6%	benign(0.001)	tolerated(0.18)	neutral(0.056)	superfamily_ARM-type_fold
STAG2	10735	genome.wustl.edu	37	X	123215294	123215294	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_001042749.1	+1	validated	p.G947A	1.000	398	0%	216	28.2%	10	0%	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_ARM-type_fold
ZNF75D	7626	genome.wustl.edu	37	X	134421629	134421630	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_007131.3	-1	reviewed	p.H324fs	0.001:0.000	-	-	-	-	-	-	-	-	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142718707	142718707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_173078.3	-1	reviewed	p.I73T	1.000	57	0%	45	26.7%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	superfamily_L domain-like
IDS	3423	genome.wustl.edu	37	X	148586605	148586605	+	Silent	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000202.5	-1	reviewed	p.C21	0.000	63	0%	45	37.8%	3	0%	-	-	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_173493.2	+1	reviewed	p.A232in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SLC6A8	6535	genome.wustl.edu	37	X	152959970	152959970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	ENST00000328897	+1	known	p.R587C	0.000	90	0%	50	22%	0	-	-	-	-	HMMPfam_SNF
HCFC1	3054	genome.wustl.edu	37	X	153220732	153220732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_005334.2	-1	reviewed	p.H1040Y	0.262	168	0%	87	31%	1	0%	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
TAZ	6901	genome.wustl.edu	37	X	153648416	153648416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A06H-01A-11D-A122-09	TCGA-AX-A06H-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11d8d059-34e4-4597-a62e-94e038923395	40123dc6-8f3a-48de-9a5a-61196884ecb5	NM_000116.3	+1	reviewed	p.L210P	1.000	209	0%	96	22.9%	16	0%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
