Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALPI	248	genome.wustl.edu	37	2	233322998	233322998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	2	233322998	233322998	G	A	SNP	ALPI	NM_001631.3	human	genbank	58_37c	+1	reviewed	missense	c.1063	p.D355N	0.000	HMMPfam_Alk_phosphatase,HMMSmart_SM00098,superfamily_Alkaline phosphatase-like	HMMPfam_Alk_phosphatase,HMMSmart_SM00098,superfamily_Alkaline phosphatase-like,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors
CCDC154	0	genome.wustl.edu	37	16	1488052	1488052	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	16	1488052	1488052	A	C	SNP	CCDC154	NM_001143980.1	human	genbank	58_37c	-1	provisional	missense	c.1151	p.L384R	0.656	NULL	NULL	-	no_errors
CHD1L	9557	genome.wustl.edu	37	1	146747774	146747775	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	1	146747774	146747775	-	A	INS	CHD1L	NM_004284.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1392_1393	p.V465fs	0.964:0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CYP11B2	1585	genome.wustl.edu	37	8	143994702	143994702	+	Silent	SNP	G	G	T	rs78354466	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	8	143994702	143994702	G	T	SNP	CYP11B2	NM_000498.3	human	genbank	58_37c	-1	reviewed	silent	c.1120	p.R374	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
ENDOU	0	genome.wustl.edu	37	12	48110712	48110712	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	12	48110712	48110712	G	A	SNP	ENDOU	NM_006025.3	human	genbank	58_37c	-1	reviewed	missense	c.389	p.P130L	0.222	HMMPfam_XendoU	HMMPfam_Somatomedin_B,HMMSmart_SO,PatternScan_SMB_1,HMMPfam_XendoU,superfamily_SSF90188	-	no_errors
ENSG00000214605	0	genome.wustl.edu	37	7	72281250	72281250	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	7	72281250	72281250	A	G	SNP	TYW1B	NM_001145440.1	human	genbank	58_37c	-1	reviewed	missense	c.239	p.V80A	0.999	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins	HMMPfam_Radical_SAM,HMMPfam_Flavodoxin_1,HMMPfam_Wyosine_form,superfamily_Flavoproteins	-	pseudogene
ENSG00000230883	0	genome.wustl.edu	37	3	127282638	127282638	+	Missense_Mutation	SNP	T	T	G	rs62264112	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	3	127282638	127282638	T	G	SNP	ENSG00000230883	ENST00000455379	human	ensembl	58_37c	+1	known	missense	c.176	p.I59S	0.010	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000246407	0	genome.wustl.edu	37	12	8384821	8384821	+	RNA	SNP	C	C	T	rs11044162	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	12	8384821	8384821	C	T	SNP	ENSG00000246407	ENST00000499592	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors
FBN1	2200	genome.wustl.edu	37	15	48766481	48766481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	15	48766481	48766481	C	A	SNP	FBN1	NM_000138.4	human	genbank	58_37c	-1	reviewed	missense	c.4181	p.G1394V	1.000	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
HERC2	8924	genome.wustl.edu	37	15	28389261	28389261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	15	28389261	28389261	G	A	SNP	HERC2	NM_004667.4	human	genbank	58_37c	-1	reviewed	missense	c.11261	p.A3754V	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMSmart_SM00706,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_MIB_HERC2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
HIST1H3G	8355	genome.wustl.edu	37	6	26271462	26271462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	6	26271462	26271462	C	T	SNP	HIST1H3G	NM_003534.2	human	genbank	58_37c	-1	reviewed	missense	c.151	p.E51K	1.000	HMMSmart_SM00428,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
KIAA2026	158358	genome.wustl.edu	37	9	5922013	5922013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	9	5922013	5922013	G	A	SNP	KIAA2026	NM_001017969.2	human	genbank	58_37c	-1	validated	missense	c.3983	p.T1328I	1.000	NULL	superfamily_Bromodomain	-	no_errors
LOC643677	643677	genome.wustl.edu	37	13	103395336	103395336	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	13	103395336	103395336	T	G	SNP	LOC643677	XM_002344085.1	human	genbank	58_37c	-1	model	missense	c.7498	p.K2500Q	0.000	NULL	NULL	-	no_errors
MLL4	9757	genome.wustl.edu	37	19	36220093	36220093	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	19	36220093	36220093	G	T	SNP	MLL4	NM_014727.1	human	genbank	58_37c	+1	reviewed	nonsense	c.4813	p.E1605*	1.000	NULL	HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
NCOR1	9611	genome.wustl.edu	37	17	16049835	16049835	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	17	16049835	16049835	G	A	SNP	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	nonsense	c.937	p.Q313*	1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NRAP	4892	genome.wustl.edu	37	10	115370292	115370292	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	10	115370292	115370292	G	A	SNP	NRAP	NM_198060.2	human	genbank	58_37c	-1	validated	nonsense	c.3529	p.R1177*	1.000	NULL	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
OR2T33	391195	genome.wustl.edu	37	1	248436504	248436504	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	1	248436504	248436504	G	C	SNP	OR2T33	NM_001004695.1	human	genbank	58_37c	-1	provisional	missense	c.613	p.L205V	0.020	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178916940	178916948	+	In_Frame_Del	DEL	AGAAAAGAT	AGAAAAGAT	-	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	AGAAAAGAT	AGAAAAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	3	178916940	178916948	AGAAAAGAT	-	DEL	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.327_335	p.EEKI109in_frame_delD	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_SSF54236	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
POLR3E	55718	genome.wustl.edu	37	16	22328486	22328486	+	Missense_Mutation	SNP	C	C	T	rs143440180	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	16	22328486	22328486	C	T	SNP	POLR3E	NM_018119.2	human	genbank	58_37c	+1	validated	missense	c.824	p.T275M	1.000	HMMPfam_Sin_N	HMMPfam_Sin_N	-	no_errors
TERF2IP	54386	genome.wustl.edu	37	16	75690148	75690148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	16	75690148	75690148	G	A	SNP	TERF2IP	NM_018975.3	human	genbank	58_37c	+1	reviewed	missense	c.839	p.C280Y	1.000	NULL	superfamily_Homeodomain-like,HMMPfam_Myb_DNA-bind_2	-	no_errors
TFE3	7030	genome.wustl.edu	37	X	48888074	48888074	+	Silent	SNP	T	T	C	rs3027472	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	X	48888074	48888074	T	C	SNP	TFE3	NM_006521.4	human	genbank	58_37c	-1	reviewed	silent	c.1323	p.V441	0.717	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
UGGT2	55757	genome.wustl.edu	37	13	96555290	96555290	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	13	96555290	96555290	C	A	SNP	UGGT2	NM_020121.3	human	genbank	58_37c	-1	validated	missense	c.2320	p.G774W	1.000	NULL	HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
