Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA5	0	genome.wustl.edu	37	17	67246096	67246096	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	17	67246096	67246096	G	A	SNP	ABCA5	NM_018672.3	human	genbank	58_37c	-1	reviewed	missense	c.4715	p.P1572L	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABHD1	0	genome.wustl.edu	37	2	27351965	27351965	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	2	27351965	27351965	T	C	SNP	ABHD1	NM_032604.3	human	genbank	58_37c	+1	reviewed	missense	c.428	p.L143P	0.802	superfamily_alpha/beta-Hydrolases	PatternScan_UPF0017,superfamily_alpha/beta-Hydrolases	-	no_errors
ADAMTS3	0	genome.wustl.edu	37	4	73161418	73161418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	4	73161418	73161418	C	T	SNP	ADAMTS3	NM_014243.1	human	genbank	58_37c	-1	reviewed	silent	c.2676	p.P892	0.684	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ANKRD35	0	genome.wustl.edu	37	1	145556634	145556634	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	145556634	145556634	A	G	SNP	ANKRD35	NM_144698.3	human	genbank	58_37c	+1	validated	silent	c.204	p.E68	0.997	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
ATP11A	0	genome.wustl.edu	37	13	113512469	113512469	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	13	113512469	113512469	C	G	SNP	ATP11A	ENST00000418678	human	ensembl	58_37c	+1	known	missense	c.2456	p.A819G	0.958	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C17orf104	0	genome.wustl.edu	37	17	42744021	42744021	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	17	42744021	42744021	C	A	SNP	C17orf104	NM_001145080.2	human	genbank	58_37c	+1	validated	missense	c.742	p.H248N	1.000	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
C3orf21	0	genome.wustl.edu	37	3	194877239	194877239	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	3	194877239	194877239	A	G	SNP	C3orf21	NM_152531.4	human	genbank	58_37c	-1	validated	missense	c.724	p.F242L	1.000	superfamily_Nucleotide-diphospho-sugar transferases	superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
CATSPER3	0	genome.wustl.edu	37	5	134347257	134347257	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	134347257	134347257	C	G	SNP	CATSPER3	NM_178019.2	human	genbank	58_37c	+1	validated	missense	c.1141	p.L381V	0.970	NULL	HMMPfam_Ion_trans,superfamily_SSF81324	-	no_errors
CLPTM1L	0	genome.wustl.edu	37	5	1334410	1334410	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	1334410	1334410	C	T	SNP	CLPTM1L	NM_030782.3	human	genbank	58_37c	-1	provisional	silent	c.885	p.A295	0.085	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2814	2814	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	MT	2814	2814	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	659	659	+	RNA	SNP	T	T	C	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	MT	659	659	T	C	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000226232	0	genome.wustl.edu	37	16	70010517	70010519	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	16	70010517	70010519	TGT	-	DEL	ENSG00000226232	ENST00000437824	human	ensembl	58_37c	-1	known	in_frame_del	c.761_759	p.Q253in_frame_del	0.600:0.610:0.620	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
ENSG00000228306	0	genome.wustl.edu	37	5	4087346	4087347	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	4087346	4087347	-	TG	INS	ENSG00000228306	ENST00000443305	human	ensembl	58_37c	-1	known	frame_shift_ins	c.323_322	p.R108fs	0.161:0.142	NULL	NULL	-	no_stop_codon
ENSG00000230974	0	genome.wustl.edu	37	4	49151549	49151549	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	4	49151549	49151549	C	T	SNP	ENSG00000230974	ENST00000447635	human	ensembl	58_37c	-1	known	missense	c.77	p.S26N	0.000	NULL	NULL	-	no_stop_codon
ENSG00000249375	0	genome.wustl.edu	37	8	128700459	128700460	+	RNA	INS	-	-	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	8	128700459	128700460	-	A	INS	ENSG00000249375	ENST00000502463	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ESR1	0	genome.wustl.edu	37	6	152382240	152382245	+	In_Frame_Del	DEL	TATTAT	TATTAT	-	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	TATTAT	TATTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	6	152382240	152382245	TATTAT	-	DEL	ESR1	NM_000125.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1350_1355	p.II451in_frame_del	0.996:1.000:1.000:1.000:1.000:1.000	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_Oest_recep,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GPX2	0	genome.wustl.edu	37	14	65406536	65406536	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	14	65406536	65406536	C	G	SNP	GPX2	NM_002083.2	human	genbank	58_37c	-1	reviewed	missense	c.243	p.E81D	1.000	HMMPfam_GSHPx,superfamily_Thioredoxin-like	HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2,superfamily_Thioredoxin-like	-	pseudogene
KIF21A	0	genome.wustl.edu	37	12	39711947	39711947	+	Missense_Mutation	SNP	C	C	T	rs139695269	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	12	39711947	39711947	C	T	SNP	KIF21A	NM_017641.3	human	genbank	58_37c	-1	validated	missense	c.3797	p.R1266Q	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_Prefoldin,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLF4	0	genome.wustl.edu	37	9	110249348	110249348	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	9	110249348	110249348	T	G	SNP	KLF4	NM_004235.4	human	genbank	58_37c	-1	validated	missense	c.1225	p.K409Q	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
LOC100287760	0	genome.wustl.edu	37	15	20563268	20563268	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	15	20563268	20563268	C	T	SNP	LOC100287760	XM_002343315.1	human	genbank	58_37c	-1	model	nonsense	c.87	p.W29*	0.008	NULL	NULL	-	no_errors
LOC100288715	0	genome.wustl.edu	37	9	34552194	34552195	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	9	34552194	34552195	-	G	INS	LOC100288715	XM_002342889.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.147_148	p.A49fs	0.963:0.984	NULL	NULL	-	no_errors
LOC440300	0	genome.wustl.edu	37	15	84855587	84855587	+	RNA	SNP	T	T	C	rs147488664	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	15	84855587	84855587	T	C	SNP	LOC440300	XR_078504.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC440300	0	genome.wustl.edu	37	15	84855668	84855668	+	RNA	SNP	C	C	T	rs71397854	byCluster	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	15	84855668	84855668	C	T	SNP	LOC440300	XR_078504.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.015	-	-	-	pseudogene
LOC91316	0	genome.wustl.edu	37	22	24037232	24037232	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	22	24037232	24037232	G	A	SNP	LOC91316	NR_024448.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
MAGI2	0	genome.wustl.edu	37	7	77789414	77789414	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	7	77789414	77789414	G	A	SNP	MAGI2	NM_012301.3	human	genbank	58_37c	-1	reviewed	missense	c.2773	p.R925C	1.000	HMMPfam_PDZ,superfamily_PDZ domain-like	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MT-CYB	0	genome.wustl.edu	37	MT	15048	15048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	MT	15048	15048	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	missense	c.302	p.G101D	NULL	HMMPfam_Cytochrom_B_N,superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MUC5B	0	genome.wustl.edu	37	11	1268064	1268064	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	11	1268064	1268064	C	T	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.9963	p.A3321	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228497229	228497229	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	228497229	228497229	G	A	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	silent	c.12981	p.T4327	0.006	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OR8K3	0	genome.wustl.edu	37	11	56085814	56085814	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	11	56085814	56085814	A	T	SNP	OR8K3	NM_001005202.1	human	genbank	58_37c	+1	provisional	missense	c.32	p.E11V	0.896	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHGA2	0	genome.wustl.edu	37	5	140720953	140720953	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	140720953	140720953	G	A	SNP	PCDHGA2	NM_018915.2	human	genbank	58_37c	+1	reviewed	silent	c.2415	p.T805	0.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	3	178936095	178936095	A	C	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1637	p.Q546P	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RET	0	genome.wustl.edu	37	10	43609956	43609956	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	10	43609956	43609956	G	A	SNP	RET	NM_020975.4	human	genbank	58_37c	+1	reviewed	silent	c.1908	p.T636	0.628	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,superfamily_Cadherin,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
SEC22B	0	genome.wustl.edu	37	1	145112468	145112468	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	145112468	145112468	A	C	SNP	SEC22B	NM_004892.4	human	genbank	58_37c	+1	reviewed	missense	c.442	p.I148L	1.000	HMMPfam_Synaptobrevin	HMMPfam_Synaptobrevin,superfamily_SNARE-like	-	pseudogene
TLE3	0	genome.wustl.edu	37	15	70347454	70347454	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	15	70347454	70347454	G	A	SNP	TLE3	NM_005078.2	human	genbank	58_37c	-1	validated	silent	c.1521	p.G507	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMPfam_TLE_N,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WASH5P	0	genome.wustl.edu	37	1	17365	17365	+	Splice_Site	SNP	C	C	G	rs76416027	unknown	TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	17365	17365	C	G	SNP	WASH5P	ENST00000438504	human	ensembl	58_37c	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_coding_region:pseudogene
