Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
RERE	473	genome.wustl.edu	37	1	8418717	8418717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001042681.1	-1	reviewed	p.Y1293C	1.000	5	0.000	34	0.235	47	19.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Atrophin-1
ENO1	2023	genome.wustl.edu	37	1	8925448	8925448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001428.2	-1	reviewed	p.S254F	0.152	55	0%	74	43.2%	1496	42.9%	benign(0.181)	deleterious(0)	neutral(0.461)	HMMPfam_Enolase_C,superfamily_Enolase C-terminal domain-like
CASZ1	54897	genome.wustl.edu	37	1	10713893	10713893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001079843.1	-1	validated	p.S741P	1.000	21	0%	20	25%	12	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MTOR	2475	genome.wustl.edu	37	1	11276257	11276257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004958.3	-1	reviewed	p.F1022S	1.000	115	0%	208	35.6%	8	50%	benign(0.062)	deleterious(0)	neutral(0.449)	superfamily_ARM-type_fold
TMCO4	255104	genome.wustl.edu	37	1	20027307	20027307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_181719.4	-1	validated	p.P446S	1.000	38	0%	58	15.5%	29	27.5%	benign(0.012)	tolerated(0.7)	neutral(0.003)	HMMPfam_DUF726
EIF4G3	8672	genome.wustl.edu	37	1	21268168	21268168	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003760.3	-1	validated	p.T437	0.003	236	0%	362	11.3%	11	9%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27097810	27097810	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006015.4	+1	reviewed	p.P1133	0.997	92	0%	111	21.6%	7	0%	-	-	-	NULL
FAM167B	84734	genome.wustl.edu	37	1	32713148	32713148	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032648.2	+1	validated	p.S42	0.492	14	0%	44	36.4%	7	0%	-	-	-	NULL
CSMD2	114784	genome.wustl.edu	37	1	34238182	34238182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_052896.3	-1	validated	p.P572S	1.000	69	1.4%	101	35.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain
PPT1	5538	genome.wustl.edu	37	1	40557771	40557771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000310.3	-1	reviewed	p.P103H	1.000	238	0%	358	14%	36	13.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Palm_thioest,superfamily_alpha/beta-Hydrolases
IPO13	9670	genome.wustl.edu	37	1	44433315	44433315	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014652.3	+1	reviewed	p.C951	1.000	26	0%	84	15.5%	49	14.2%	-	-	-	NULL
TTC39A	22996	genome.wustl.edu	37	1	51777814	51777814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001144832.1	-1	validated	p.P115L	0.089	83	0%	199	17.1%	23	26%	possibly_damaging(0.679)	tolerated(0.28)	neutral(0.273)	HMMPfam_Deme6
INADL	10207	genome.wustl.edu	37	1	62367102	62367102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_176877.2	+1	reviewed	p.A1118T	0.798	343	0%	438	16.9%	18	0%	possibly_damaging(0.755)	tolerated(0.64)	neutral(0.282)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ANKRD13C	81573	genome.wustl.edu	37	1	70766538	70766538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_030816.4	-1	validated	p.L277P	0.999	129	0%	215	17.2%	1	0%	probably_damaging(0.989)	tolerated(0.14)	deleterious(0.689)	NULL
ST6GALNAC3	256435	genome.wustl.edu	37	1	77093212	77093212	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_152996.2	+1	validated	p.H233	0.988	291	0%	419	20.5%	0	-	-	-	-	HMMPfam_Glyco_transf_29
CLCA1	1179	genome.wustl.edu	37	1	86939116	86939116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001285.3	+1	reviewed	p.A60V	0.995	66	0%	70	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CLCA_N
ZNF644	84146	genome.wustl.edu	37	1	91404598	91404604	+	Frame_Shift_Del	DEL	AGAATTT	AGAATTT	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	AGAATTT	AGAATTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_201269.1	-1	validated	p.L769fs	0.998:1.000:1.000:0.999:0.997:0.973:0.150	-	-	-	-	-	-	-	-	-	NULL
GLMN	11146	genome.wustl.edu	37	1	92737098	92737101	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	CTAA	CTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_053274.2	-1	reviewed	p.L282fs	0.987:0.897:0.885:0.740	-	-	-	-	-	-	-	-	-	HMMPfam_FKBP12
DNTTIP2	30836	genome.wustl.edu	37	1	94342444	94342444	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014597.3	-1	provisional	p.S349	0.015	372	0%	323	18.9%	19	10.5%	-	-	-	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94650988	94650988	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004815.3	-1	validated	p.A610	0.991	419	0%	555	15.7%	5	20%	-	-	-	superfamily_Cysteine-rich domain
GSTM1	2944	genome.wustl.edu	37	1	110231873	110231873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000561.3	+1	reviewed	p.R96C	1.000	534	0%	651	39.2%	81	33.3%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	superfamily_Glutathione S-transferase (GST) C-terminal domain
CHI3L2	1117	genome.wustl.edu	37	1	111772498	111772498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004000.2	+1	validated	p.Q22R	0.314	329	0%	687	37.7%	1	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
OLFML3	56944	genome.wustl.edu	37	1	114523056	114523056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020190.2	+1	validated	p.R73W	1.000	155	0%	198	14.1%	22	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118523990	118523990	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_206996.2	-1	validated	p.S1969	0.000	327	0%	344	14.8%	1	0%	-	-	-	NULL
VPS45	11311	genome.wustl.edu	37	1	150064115	150064115	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_007259.3	+1	reviewed	p.R397*	1.000	100	0%	196	12.2%	28	3.5%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
ECM1	1893	genome.wustl.edu	37	1	150485839	150485839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004425.3	+1	reviewed	p.V507L	0.946	64	0%	79	24.1%	15	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ECM1
SETDB1	9869	genome.wustl.edu	37	1	150933087	150933087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001145415.1	+1	reviewed	p.G850D	1.000	139	0%	346	58.4%	17	70.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
FLG	2312	genome.wustl.edu	37	1	152281254	152281254	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002016.1	-1	reviewed	p.H2036	0.000	215	0%	182	28.6%	0	-	-	-	-	HMMPfam_Filaggrin
KPRP	448834	genome.wustl.edu	37	1	152733550	152733550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001025231.1	+1	provisional	p.R496C	0.000	58	0%	86	16.3%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
LCE1B	353132	genome.wustl.edu	37	1	152785240	152785240	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_178349.1	+1	validated	p.C106	0.965	84	0%	127	11%	0	-	-	-	-	NULL
SPRR2E	6704	genome.wustl.edu	37	1	153066122	153066122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001024209.2	-1	validated	p.C36R	0.002	674	0%	1215	22.2%	0	-	unknown(0)	-	-	NULL
FDPS	2224	genome.wustl.edu	37	1	155279838	155279838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001135821.1	+1	reviewed	p.L61I	0.621	69	0%	127	21.3%	54	40.7%	benign(0.119)	tolerated(0.11)	neutral(0.281)	NULL
ARHGEF2	9181	genome.wustl.edu	37	1	155934898	155934898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004723.3	-1	validated	p.M174T	1.000	133	0%	284	10.2%	49	12.2%	possibly_damaging(0.906)	tolerated(0.33)	neutral(0.384)	NULL
PEAR1	375033	genome.wustl.edu	37	1	156880074	156880074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080471.1	+1	provisional	p.C576Y	1.000	59	0%	61	23%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,HMMSmart_EGF
ARHGEF11	9826	genome.wustl.edu	37	1	156937810	156937810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_198236.1	-1	reviewed	p.S311L	0.991	39	0%	78	17.9%	8	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
OR6K2	81448	genome.wustl.edu	37	1	158669499	158669499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001005279.1	-1	provisional	p.V315A	0.000	272	0.4%	394	26.6%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
DARC	2532	genome.wustl.edu	37	1	159175785	159175785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001122951.1	+1	reviewed	p.L188M	0.736	43	0%	86	16.3%	21	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
DEDD	9191	genome.wustl.edu	37	1	161094034	161094034	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001039711.1	-1	reviewed	p.R73	1.000	171	0.6%	386	14.8%	69	21.7%	-	-	-	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
USP21	27005	genome.wustl.edu	37	1	161130674	161130674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001014443.2	+1	reviewed	p.L82I	0.952	47	0%	89	30.3%	23	39.1%	possibly_damaging(0.936)	tolerated(0.06)	deleterious(0.704)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184767326	184767326	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_052966.2	-1	validated	e13-2	1.000	235	0%	399	10.8%	0	-	-	-	-	-
CACNA1S	779	genome.wustl.edu	37	1	201030417	201030417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000069.2	-1	reviewed	p.N1078S	1.000	253	0%	226	19.9%	0	-	possibly_damaging(0.591)	deleterious(0.04)	deleterious(0.553)	NULL
MYOG	4656	genome.wustl.edu	37	1	203054721	203054721	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002479.4	-1	reviewed	p.R123	1.000	38	0%	81	11.1%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
CHI3L1	1116	genome.wustl.edu	37	1	203148973	203148973	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000404436	-1	known	p.*78Q	0.000	164	0%	267	24.3%	389	37.5%	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
IL24	11009	genome.wustl.edu	37	1	207074974	207074974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006850.2	+1	reviewed	p.I147V	0.376	58	0%	219	26%	0	-	probably_damaging(0.971)	tolerated(0.09)	deleterious(0.710)	superfamily_4_helix_cytokine
PIGR	5284	genome.wustl.edu	37	1	207105900	207105900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002644.3	-1	reviewed	p.S637P	0.567	83	0%	69	15.9%	828	2.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
HSD11B1	3290	genome.wustl.edu	37	1	209878261	209878261	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_181755.1	+1	reviewed	e1-1	0.984	136	0%	261	29.1%	0	-	-	-	-	-
TRAF3IP3	80342	genome.wustl.edu	37	1	209953941	209953941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025228.2	+1	reviewed	p.K460R	1.000	213	0%	219	26%	2	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213414091	213414091	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_012424.3	+1	validated	p.P424	0.733	153	0%	145	29.7%	2	0%	-	-	-	NULL
TP53BP2	7159	genome.wustl.edu	37	1	223984065	223984065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001031685.2	-1	reviewed	p.A726T	1.000	268	0%	479	18.6%	17	11.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
LBR	3930	genome.wustl.edu	37	1	225592123	225592123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002296.2	-1	reviewed	p.A557V	1.000	143	0%	293	32.4%	12	16.6%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_ERG4_ERG24
EPHX1	2052	genome.wustl.edu	37	1	226026455	226026455	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000120.3	+1	reviewed	p.Y155	0.847	73	0%	136	28.7%	962	30.9%	-	-	-	HMMPfam_EHN,superfamily_SSF53474
WNT9A	7483	genome.wustl.edu	37	1	228112072	228112072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003395.2	-1	validated	p.I128V	1.000	14	0%	30	30%	7	57.1%	possibly_damaging(0.869)	tolerated(0.23)	neutral(0.379)	HMMPfam_wnt,HMMSmart_WNT1
C1orf124	83932	genome.wustl.edu	37	1	231487083	231487083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032018.4	+1	validated	p.Y162H	1.000	77	0%	131	16%	9	0%	benign(0.227)	tolerated(0.11)	neutral(0.294)	HMMSmart_SM00731,HMMPfam_SprT-like
SIPA1L2	57568	genome.wustl.edu	37	1	232650878	232650878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020808.3	-1	validated	p.A70T	1.000	122	0%	197	14.2%	6	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
RYR2	6262	genome.wustl.edu	37	1	237754034	237754034	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001035.2	+1	reviewed	p.F1301Y	1.000	265	0%	415	52.3%	0	-	benign(0.002)	-	-	NULL
OR14A16	284532	genome.wustl.edu	37	1	247978792	247978792	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001001966.1	-1	provisional	p.I80	0.000	198	0%	522	13.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TPO	7173	genome.wustl.edu	37	2	1491694	1491694	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000547.5	+1	reviewed	p.L567	0.631	42	0%	86	32.6%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
GREB1	9687	genome.wustl.edu	37	2	11738969	11738969	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014668.3	+1	reviewed	p.A772	0.794	271	0%	308	20.5%	2	0%	-	-	-	NULL
PUM2	23369	genome.wustl.edu	37	2	20460179	20460179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015317.1	-1	provisional	p.M758I	1.000	177	0%	231	22.1%	15	46.6%	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_PUF,HMMSmart_SM00025,superfamily_ARM repeat
C2orf84	653140	genome.wustl.edu	37	2	24413297	24413297	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001040710.1	+1	predicted	p.Y140D	0.010	50	0%	56	37.5%	0	-	benign(0.076)	deleterious(0.03)	neutral(0.370)	NULL
CAD	790	genome.wustl.edu	37	2	27465263	27465263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004341.3	+1	reviewed	p.R2064C	1.000	24	0%	35	37.1%	51	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N
C2orf16	84226	genome.wustl.edu	37	2	27802765	27802765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032266.3	+1	validated	p.P1109H	0.999	87	0%	120	18.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LBH	81606	genome.wustl.edu	37	2	30480481	30480481	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_030915.3	+1	validated	p.E104	1.000	36	0%	55	30.9%	25	32%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32613983	32613983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016252.3	+1	reviewed	p.G271R	1.000	208	0%	243	39.5%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MSH6	2956	genome.wustl.edu	37	2	48026240	48026240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000179.2	+1	reviewed	p.L373P	1.000	249	0%	330	12.1%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EML6	400954	genome.wustl.edu	37	2	55189824	55189824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001039753.2	+1	validated	p.R1712W	1.000	47	0%	55	12.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
CCDC104	112942	genome.wustl.edu	37	2	55772050	55772050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_080667.5	+1	validated	p.T312K	1.000	141	0%	162	26.5%	54	35.1%	possibly_damaging(0.905)	tolerated(0.1)	deleterious(0.646)	NULL
MOGS	7841	genome.wustl.edu	37	2	74689172	74689172	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006302.2	-1	reviewed	p.L582	0.991	78	0%	108	18.5%	64	12.5%	-	-	-	HMMPfam_Glyco_hydro_63,superfamily_Six-hairpin glycosidases
DNAH6	1768	genome.wustl.edu	37	2	84834108	84834110	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001370.1	+1	validated	p.D1063in_frame_del	0.971:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DHC_N2
LINC00152	112597	genome.wustl.edu	37	2	87820924	87820924	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NR_024204.1	+1	validated	NULL	0.004	177	0%	252	31.3%	34	32.3%	-	-	-	-
ARID5A	10865	genome.wustl.edu	37	2	97215532	97215532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_212481.1	+1	validated	p.A101V	1.000	13	0%	25	40%	25	40%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
TSGA10	80705	genome.wustl.edu	37	2	99685396	99685396	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025244.2	-1	validated	p.D391	0.802	515	0%	354	18.9%	1	100%	-	-	-	NULL
POLR1B	84172	genome.wustl.edu	37	2	113304686	113304686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_019014.4	+1	validated	p.I92T	1.000	196	0%	197	34%	4	0%	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
TFCP2L1	29842	genome.wustl.edu	37	2	122007162	122007162	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014553.2	-1	validated	p.N92	0.995	113	0%	115	10.4%	5	0%	-	-	-	HMMPfam_CP2
LRP2	4036	genome.wustl.edu	37	2	170038733	170038733	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004525.2	-1	reviewed	p.A3314	1.000	156	0%	155	18.7%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170044631	170044631	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004525.2	-1	reviewed	p.D3059	0.721	194	0%	306	20.3%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
NFE2L2	4780	genome.wustl.edu	37	2	178098803	178098803	+	Splice_Site	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000449627	-1	known	e1+1	1.000	356	0%	375	40.5%	39	43.5%	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179443925	179443925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000356127	-1	known	p.Y20041C	0.968	100	0%	131	19.1%	0	-	benign(0.092)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179595380	179595380	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000356127	-1	known	p.S4716	0.906	111	0%	183	35%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
GTF3C3	9330	genome.wustl.edu	37	2	197657762	197657764	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_012086.2	-1	provisional	p.E111in_frame_del	0.984:0.986:0.955	-	-	-	-	-	-	-	-	-	NULL
SATB2	23314	genome.wustl.edu	37	2	200213657	200213657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015265.3	-1	reviewed	p.A314T	1.000	433	0%	412	29.1%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209177007	209177007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015040.3	+1	reviewed	p.A562T	1.000	487	0.4%	720	36.4%	2	0%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	NULL
FN1	2335	genome.wustl.edu	37	2	216229670	216229670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_212482.1	-1	reviewed	p.V2395I	1.000	103	0%	175	24.6%	175	0.5%	benign(0.249)	tolerated(0.2)	neutral(0.074)	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,superfamily_Fibronectin type I module
DIS3L2	129563	genome.wustl.edu	37	2	233195460	233195460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_152383.4	+1	validated	p.T662A	1.000	45	0%	27	14.8%	28	10.7%	benign(0.378)	deleterious(0.04)	deleterious(0.469)	HMMPfam_RNB
DGKD	8527	genome.wustl.edu	37	2	234358645	234358645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_152879.2	+1	reviewed	p.A636T	1.000	17	0%	16	50%	3	33.3%	possibly_damaging(0.804)	tolerated(0.23)	neutral(0.344)	NULL
HDLBP	3069	genome.wustl.edu	37	2	242182033	242182033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005336.3	-1	validated	p.T671A	0.899	54	0%	98	27.6%	188	50%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CHL1	10752	genome.wustl.edu	37	3	405039	405039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006614.2	+1	reviewed	p.A520T	0.895	288	0%	568	23.8%	0	-	benign(0.327)	tolerated(0.3)	neutral(0.131)	HMMSmart_SM00409,superfamily_Immunoglobulin
MTMR14	64419	genome.wustl.edu	37	3	9729564	9729564	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001077525.2	+1	reviewed	p.L408	1.000	69	0%	109	48.6%	32	62.5%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
C3orf19	51244	genome.wustl.edu	37	3	14711469	14711469	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016474.4	+1	validated	p.P327	0.091	89	0%	158	12%	24	8.3%	-	-	-	NULL
NR2C2	7182	genome.wustl.edu	37	3	15080689	15080689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003298.3	+1	validated	p.E543G	1.000	109	0%	218	12.4%	6	16.6%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
LOC100131542	100131542	genome.wustl.edu	37	3	25831314	25831314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XM_001716831.1	+1	model	p.P156S	0.000	138	0%	210	23.8%	0	-	-	-	-	NULL
ZNF860	344787	genome.wustl.edu	37	3	32031357	32031357	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001137674.1	+1	provisional	p.V262	0.503	275	0%	531	13%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GOLGA4	2803	genome.wustl.edu	37	3	37357056	37357056	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002078.4	+1	reviewed	p.S460	0.988	409	0%	672	24%	2	0%	-	-	-	NULL
SLC22A14	9389	genome.wustl.edu	37	3	38355332	38355332	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004803.3	+1	validated	p.C426	0.004	147	0%	254	18.9%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SCN10A	6336	genome.wustl.edu	37	3	38791625	38791625	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006514.2	-1	validated	p.D602	0.934	146	0%	271	15.9%	0	-	-	-	-	NULL
CSRNP1	64651	genome.wustl.edu	37	3	39186630	39186630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_033027.3	-1	reviewed	p.G108D	1.000	44	0%	75	48%	8	62.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47042546	47042546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015175.1	+1	validated	p.T1454M	0.999	28	0%	18	22.2%	12	41.6%	benign(0.389)	tolerated(0.72)	neutral(0.126)	NULL
BSN	8927	genome.wustl.edu	37	3	49701929	49701929	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003458.3	+1	reviewed	p.S3894	0.947	11	0%	28	21.4%	0	-	-	-	-	NULL
RNF123	63891	genome.wustl.edu	37	3	49740922	49740922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_022064.2	+1	reviewed	p.L605M	1.000	22	0%	52	26.9%	10	30%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51449845	51449845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014703.2	-1	validated	p.E1347D	0.977	230	0%	598	11.9%	39	15.3%	unknown(0)	tolerated(0.45)	-	NULL
IQCF2	389123	genome.wustl.edu	37	3	51897001	51897001	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_203424.1	+1	validated	e3-2	0.018	44	0%	70	21.4%	0	-	-	-	-	-
PARP3	10039	genome.wustl.edu	37	3	51981887	51981887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001003931.2	+1	reviewed	p.I477V	0.986	60	0%	270	15.6%	32	9.3%	benign(0.001)	tolerated(0.97)	-	HMMPfam_PARP,superfamily_SSF56399
DUSP7	1849	genome.wustl.edu	37	3	52084847	52084847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001947.3	-1	validated	p.T364M	0.997	81	0%	70	20%	9	22.2%	possibly_damaging(0.89)	deleterious(0.02)	deleterious(0.733)	NULL
CACNA1D	776	genome.wustl.edu	37	3	53700439	53700439	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000481085	+1	known	p.R17Q	0.032	163	0%	448	25.2%	0	-	-	-	-	HMMPfam_Ion_trans
CACNA2D3	55799	genome.wustl.edu	37	3	54661879	54661879	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_018398.2	+1	reviewed	p.N343	0.802	374	0%	961	14.3%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ADAMTS9	56999	genome.wustl.edu	37	3	64536627	64536627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_182920.1	-1	reviewed	p.R1604C	0.014	97	0%	217	13.4%	10	20%	benign(0.339)	tolerated(0.17)	neutral(0.166)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MAGI1	9223	genome.wustl.edu	37	3	65365099	65365099	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000460329	-1	known	p.A851V	1.000	51	0%	67	25.4%	37	16.2%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78666966	78666966	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002941.3	-1	reviewed	p.T1367	0.017	95	0%	155	32.3%	28	46.4%	-	-	-	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100583677	100583677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015429.3	-1	validated	p.A362T	0.998	203	0%	227	26.9%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111688702	111688702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001134438.1	+1	validated	p.K1161E	1.000	235	0%	466	16.3%	1	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
WDR52	55779	genome.wustl.edu	37	3	113049472	113049473	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000393845	-1	known	p.L368fs	0.542:0.493	-	-	-	-	-	-	-	-	-	NULL
C3orf15	89876	genome.wustl.edu	37	3	119462954	119462954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_033364.3	+1	validated	p.R605C	0.986	85	0%	182	45.6%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYLK	4638	genome.wustl.edu	37	3	123348451	123348451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_053025.3	-1	reviewed	p.M1662V	1.000	95	0%	171	12.9%	25	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RAB6B	51560	genome.wustl.edu	37	3	133557074	133557074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016577.3	-1	validated	p.R144H	0.999	63	0%	106	21.7%	23	13%	possibly_damaging(0.602)	tolerated(0.12)	deleterious(0.469)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLCO2A1	6578	genome.wustl.edu	37	3	133667485	133667485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005630.2	-1	validated	p.A334T	0.999	238	0%	475	29.1%	11	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
EPHB1	2047	genome.wustl.edu	37	3	134825298	134825298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004441.4	+1	reviewed	p.A272T	1.000	67	0%	158	24.1%	0	-	benign(0.01)	tolerated(0.45)	neutral(0.013)	NULL
AGTR1	185	genome.wustl.edu	37	3	148459389	148459389	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000685.4	+1	reviewed	p.S189	0.171	152	0%	259	27.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR87	53836	genome.wustl.edu	37	3	151012416	151012416	+	Silent	SNP	T	T	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_023915.3	-1	validated	p.A206	0.025	282	0%	508	13.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PIK3CA	5290	genome.wustl.edu	37	3	178916729	178916729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006218.2	+1	reviewed	p.E39G	1.000	73	0%	121	28.9%	0	-	probably_damaging(0.984)	tolerated(0.13)	deleterious(0.683)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PARL	55486	genome.wustl.edu	37	3	183551311	183551311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_018622.5	-1	reviewed	p.A333T	1.000	148	0%	355	16.9%	63	9.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Rhomboid
DVL3	1857	genome.wustl.edu	37	3	183888291	183888291	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004423.3	+1	reviewed	p.S633	1.000	26	0%	45	13.3%	50	20%	-	-	-	NULL
MAP3K13	9175	genome.wustl.edu	37	3	185181431	185181431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004721.3	+1	reviewed	p.R458C	1.000	140	0%	323	26.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HRG	3273	genome.wustl.edu	37	3	186392978	186392978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000412.2	+1	reviewed	p.Q247R	0.618	261	0%	476	24.2%	0	-	possibly_damaging(0.873)	deleterious(0.02)	deleterious(0.722)	NULL
ATP13A5	344905	genome.wustl.edu	37	3	193023395	193023395	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_198505.2	-1	provisional	p.P877	0.976	589	0%	1208	27%	0	-	-	-	-	superfamily_SSF56784,superfamily_SSF81665
KIAA0226	9711	genome.wustl.edu	37	3	197408046	197408046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001145642.2	-1	validated	p.I750T	1.000	93	0%	134	23.9%	6	50%	possibly_damaging(0.898)	deleterious(0.05)	deleterious(0.700)	NULL
LMLN	89782	genome.wustl.edu	37	3	197703492	197703492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001136049.2	+1	reviewed	p.L152P	0.535	95	0%	227	18.9%	1	0%	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
RNF4	6047	genome.wustl.edu	37	4	2515435	2515435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000511859	+1	known	p.A101V	0.998	93	0%	150	12.7%	50	10%	unknown(0)	deleterious(0)	-	NULL
OTOP1	133060	genome.wustl.edu	37	4	4199591	4199591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_177998.1	-1	provisional	p.A324T	0.526	37	0%	80	26.3%	0	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	HMMPfam_DUF270
MAN2B2	23324	genome.wustl.edu	37	4	6610848	6610848	+	Missense_Mutation	SNP	C	C	T	rs184138382	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015274.1	+1	validated	p.T610M	0.961	56	0%	66	43.9%	52	40.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C
TBC1D14	57533	genome.wustl.edu	37	4	7012479	7012479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001113361.1	+1	validated	p.M540V	1.000	212	0%	318	41.2%	9	55.5%	benign(0.124)	tolerated(0.13)	neutral(0.263)	HMMPfam_TBC,HMMSmart_TBC
CLOCK	9575	genome.wustl.edu	37	4	56319268	56319268	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004898.2	-1	reviewed	p.R387*	1.000	136	0%	165	30.9%	1	0%	-	-	-	NULL
TMPRSS11B	132724	genome.wustl.edu	37	4	69094977	69094977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_182502.3	-1	validated	p.N315S	0.098	299	0%	241	33.6%	0	-	probably_damaging(0.98)	tolerated(0.13)	deleterious(0.676)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CXCL3	2921	genome.wustl.edu	37	4	74903853	74903853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002090.2	-1	validated	p.A89T	0.777	196	0%	284	10.6%	1	0%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
FRAS1	80144	genome.wustl.edu	37	4	79396683	79396683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025074.6	+1	reviewed	p.E2591K	0.744	114	0.9%	168	42.9%	3	0%	benign(0.001)	tolerated(0.85)	neutral(0.001)	HMMPfam_Calx-beta,HMMSmart_SM00237
DSPP	1834	genome.wustl.edu	37	4	88535227	88535227	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014208.3	+1	reviewed	p.S471	0.024	338	0%	272	21.7%	0	-	-	-	-	NULL
LOC100287782	100287782	genome.wustl.edu	37	4	99877753	99877756	+	Frame_Shift_Del	DEL	AAAA	AAAA	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XM_002342458.1	+1	model	p.K78fs	0.064:0.068:0.071:0.074	-	-	-	-	-	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126241144	126241144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024582.4	+1	validated	p.Q1193R	1.000	99	0%	60	21.7%	0	-	benign(0.144)	tolerated(0.53)	neutral(0.020)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126412010	126412010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024582.4	+1	validated	p.Y4678C	0.526	145	0%	216	20.4%	5	0%	probably_damaging(0.978)	tolerated(0.18)	deleterious(0.476)	NULL
PHF17	79960	genome.wustl.edu	37	4	129783194	129783194	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_199320.2	+1	validated	p.A439	0.970	135	0%	186	19.9%	15	26.6%	-	-	-	NULL
ETFDH	2110	genome.wustl.edu	37	4	159627353	159627353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004453.2	+1	reviewed	p.T433I	1.000	145	0%	192	20.3%	14	7.1%	benign(0)	tolerated(0.1)	neutral(0.286)	superfamily_FAD/NAD(P)-binding domain
FAM218A	152756	genome.wustl.edu	37	4	165878494	165878494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_153027.1	+1	predicted	p.T107M	0.000	14	0%	32	28.1%	0	-	possibly_damaging(0.828)	-	-	NULL
DDX60L	91351	genome.wustl.edu	37	4	169351665	169351666	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001012967.1	-1	validated	p.E548fs	0.002:0.003	-	-	-	-	-	-	-	-	-	NULL
GLRA3	8001	genome.wustl.edu	37	4	175710001	175710001	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006529.2	-1	validated	p.S55	0.018	207	0%	252	39.3%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ASB5	140458	genome.wustl.edu	37	4	177142621	177142621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_080874.2	-1	reviewed	p.T172M	0.011	99	0%	78	23.1%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
IL7R	3575	genome.wustl.edu	37	5	35874558	35874558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002185.2	+1	reviewed	p.M238I	0.004	348	0%	505	18%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
NIPBL	25836	genome.wustl.edu	37	5	37057374	37057374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_133433.3	+1	reviewed	p.M2450I	1.000	200	0.5%	394	16.2%	12	25%	benign(0.073)	tolerated(1)	neutral(0.005)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73187963	73187963	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080479.2	+1	reviewed	p.A1158	0.996	173	0%	305	32.8%	6	50%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SPZ1	84654	genome.wustl.edu	37	5	79617056	79617056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032567.3	+1	validated	p.L341P	0.006	75	0%	92	39.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
HAPLN1	1404	genome.wustl.edu	37	5	82940461	82940461	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001884.3	-1	validated	p.R166*	0.995	18	0%	24	33.3%	3	0%	-	-	-	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
COX7C	1350	genome.wustl.edu	37	5	85915218	85915218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001867.2	+1	reviewed	p.C42G	0.614	212	0%	368	20.9%	771	20.1%	benign(0.025)	deleterious(0)	neutral(0.446)	HMMPfam_COX7C,superfamily_Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
SLC4A9	83697	genome.wustl.edu	37	5	139743774	139743774	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_031467.2	+1	validated	e10+2	1.000	38	0%	47	29.8%	0	-	-	-	-	-
HARS2	23438	genome.wustl.edu	37	5	140073860	140073860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_012208.2	+1	reviewed	p.L132I	1.000	141	0%	181	23.8%	19	42.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
PCDHB14	56122	genome.wustl.edu	37	5	140604697	140604697	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_018934.2	+1	reviewed	p.A540	0.631	25	0%	46	32.6%	23	21.7%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB18	54660	genome.wustl.edu	37	5	140615531	140615531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000274705	+1	known	p.H416Y	0.082	55	0%	96	36.5%	11	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
SPRY4	81848	genome.wustl.edu	37	5	141694081	141694081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_030964.3	-1	validated	p.T221M	1.000	73	0%	97	40.2%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sprouty
SLU7	10569	genome.wustl.edu	37	5	159840965	159840965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006425.4	-1	reviewed	p.R116C	1.000	207	0%	228	32.9%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ODZ2	57451	genome.wustl.edu	37	5	167689426	167689426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001122679.1	+1	inferred	p.G2637R	1.000	36	0%	32	15.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
NSD1	64324	genome.wustl.edu	37	5	176636852	176636852	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_022455.4	+1	reviewed	p.E484	1.000	135	0%	181	33.7%	0	-	-	-	-	NULL
GRM6	2916	genome.wustl.edu	37	5	178408732	178408732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000843.3	-1	reviewed	p.R854*	1.000	33	0%	52	19.2%	0	-	-	-	-	NULL
HNRNPH1	3187	genome.wustl.edu	37	5	179045211	179045211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000510678	-1	known	p.E171*	1.000	94	0%	151	40.4%	176	46%	-	-	-	NULL
SLC22A23	63027	genome.wustl.edu	37	6	3273306	3273306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015482.1	-1	validated	p.G682S	0.980	10	0%	15	33.3%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GFOD1	54438	genome.wustl.edu	37	6	13487073	13487073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_018988.2	-1	provisional	p.I17T	1.000	34	0%	22	36.4%	0	-	benign(0.424)	deleterious(0.01)	deleterious(0.543)	HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-binding Rossmann-fold domains
CAP2	10486	genome.wustl.edu	37	6	17426914	17426914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006366.2	+1	reviewed	p.E72A	0.999	118	0%	139	33.8%	20	35%	benign(0.252)	tolerated(1)	neutral(0.026)	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
HIST1H3C	8352	genome.wustl.edu	37	6	26045999	26045999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003531.2	+1	reviewed	p.M121L	1.000	42	0%	62	25.8%	0	-	benign(0.004)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
DNAH8	1769	genome.wustl.edu	37	6	38770986	38770986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001371.2	+1	validated	p.N761S	1.000	221	0%	269	11.9%	0	-	benign(0.01)	tolerated(0.55)	neutral(0.007)	NULL
UNC5CL	222643	genome.wustl.edu	37	6	41001767	41001767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_173561.1	-1	provisional	p.T180M	0.930	25	0%	32	46.9%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ZU5
GUCA1B	2979	genome.wustl.edu	37	6	42152477	42152477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000372949	-1	known	p.L176F	0.000	68	0%	69	53.6%	0	-	possibly_damaging(0.815)	tolerated(0.23)	neutral(0.349)	superfamily_EF-hand
PLA2G7	7941	genome.wustl.edu	37	6	46680050	46680050	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005084.3	-1	reviewed	p.I165	0.988	255	0%	358	11.7%	2	0%	-	-	-	HMMPfam_PAF-AH_p_II,superfamily_SSF53474
GPR111	222611	genome.wustl.edu	37	6	47647941	47647941	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_153839.6	+1	validated	p.Q134	0.000	124	0%	124	32.3%	1	100%	-	-	-	NULL
PTCHD4	442213	genome.wustl.edu	37	6	47846896	47846896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001013732.3	-1	validated	p.N545D	1.000	75	0%	91	19.8%	1	0%	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	HMMPfam_Patched
DST	667	genome.wustl.edu	37	6	56484213	56484213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001723.5	-1	reviewed	p.Q1540R	0.986	190	0%	172	11%	0	-	possibly_damaging(0.563)	tolerated(0.2)	neutral(0.241)	NULL
COL19A1	1310	genome.wustl.edu	37	6	70608916	70608916	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001858.4	+1	reviewed	e2+2	1.000	90	0%	114	33.3%	0	-	-	-	-	-
MYO6	4646	genome.wustl.edu	37	6	76540140	76540140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004999.3	+1	reviewed	p.V90A	1.000	252	0%	315	29.8%	11	54.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO6	4646	genome.wustl.edu	37	6	76582939	76582939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004999.3	+1	reviewed	p.R667C	1.000	396	0%	611	10.6%	33	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD6	22881	genome.wustl.edu	37	6	90338948	90338948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000339746	+1	known	p.S535P	0.999	118	0%	157	31.2%	4	50%	possibly_damaging(0.61)	deleterious(0.01)	deleterious(0.617)	NULL
PDSS2	57107	genome.wustl.edu	37	6	107780273	107780273	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020381.3	-1	reviewed	p.L73	1.000	13	0%	33	15.2%	25	4%	-	-	-	NULL
ZUFSP	221302	genome.wustl.edu	37	6	116987840	116987840	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_145062.2	-1	validated	p.H172	1.000	169	0%	226	39.8%	3	66.6%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CEP85L	387119	genome.wustl.edu	37	6	118845064	118845064	+	Missense_Mutation	SNP	C	C	T	rs185836271	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001042475.2	-1	validated	p.R347H	0.997	305	0%	228	10.1%	0	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	NULL
C6orf58	352999	genome.wustl.edu	37	6	127911310	127911311	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001010905.1	+1	predicted	p.P252fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF781
LAMA2	3908	genome.wustl.edu	37	6	129419475	129419475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000426.3	+1	reviewed	p.R185L	1.000	132	0%	193	30.1%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
ARG1	383	genome.wustl.edu	37	6	131904242	131904242	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000045.2	+1	reviewed	p.T201	1.000	232	0%	353	18.4%	0	-	-	-	-	HMMPfam_Arginase,superfamily_Arginase/deacetylase
GPR126	57211	genome.wustl.edu	37	6	142688858	142688859	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_198569.2	+1	reviewed	p.F86fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
SYNE1	23345	genome.wustl.edu	37	6	152697561	152697561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_182961.2	-1	reviewed	p.I3093M	0.998	315	0%	303	36.6%	0	-	benign(0.284)	tolerated(0.05)	neutral(0.432)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FNDC1	84624	genome.wustl.edu	37	6	159653636	159653636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032532.2	+1	validated	p.R698W	0.000	28	0%	18	22.2%	2	0%	unknown(0)	deleterious(0)	-	NULL
MRPL18	29074	genome.wustl.edu	37	6	160212048	160212048	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014161.3	+1	reviewed	p.A43	0.588	39	0%	50	38%	64	53.1%	-	-	-	NULL
PACRG	135138	genome.wustl.edu	37	6	163735946	163735946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_152410.2	+1	reviewed	p.R273H	1.000	83	0%	132	27.3%	19	52.6%	probably_damaging(0.973)	tolerated(0.49)	neutral(0.425)	HMMPfam_ParcG
FAM20C	56975	genome.wustl.edu	37	7	295867	295867	+	Silent	SNP	C	C	T	rs149513190	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000510839	+1	known	p.R88C	0.996	4	0.000	7	0.571	14	57.1%	-	-	-	HMMPfam_DUF1193
HIBADH	11112	genome.wustl.edu	37	7	27565960	27565960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_152740.2	-1	validated	p.S295N	0.966	58	0%	83	12%	91	18.6%	benign(0)	tolerated(0.57)	neutral(0.006)	superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
C7orf10	79783	genome.wustl.edu	37	7	40498776	40498776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024728.1	+1	provisional	p.L292P	1.000	160	0%	178	14.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_CoA-Trfase_fam_III
C7orf65	401335	genome.wustl.edu	37	7	47698583	47698583	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001123065.1	+1	validated	p.S71	0.002	84	0%	132	35.6%	0	-	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47925491	47925491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_138295.2	-1	reviewed	p.P1000S	0.000	136	0%	165	14.5%	0	-	benign(0.122)	tolerated(0.11)	neutral(0.282)	NULL
NSUN5P1	155400	genome.wustl.edu	37	7	75045046	75045046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000427550	+1	known	p.S45L	1.000	35	0%	53	17%	12	16.6%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CACNA2D1	781	genome.wustl.edu	37	7	81594937	81594937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000722.2	-1	reviewed	p.M849I	1.000	192	0%	372	12.4%	0	-	benign(0.248)	tolerated(0.47)	neutral(0.036)	NULL
ABCB1	5243	genome.wustl.edu	37	7	87214992	87214992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000927.3	-1	reviewed	p.R41H	1.000	98	0%	131	39.7%	2	0%	unknown(0)	deleterious(0)	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
CCDC132	55610	genome.wustl.edu	37	7	92881996	92881996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_017667.2	+1	validated	p.S45G	0.999	189	0%	152	32.2%	2	0%	benign(0.008)	deleterious(0.04)	neutral(0.349)	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100839302	100839302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000379423	-1	known	p.G250S	0.210	65	0%	90	22.2%	0	-	unknown(0)	tolerated(0.27)	-	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100844027	100844027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_178176.2	-1	provisional	p.G37C	1.000	65	0%	70	21.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106509866	106509866	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002649.2	+1	reviewed	p.S620	1.000	85	0%	86	17.4%	0	-	-	-	-	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
IQUB	154865	genome.wustl.edu	37	7	123152298	123152298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_178827.4	-1	validated	p.S33P	0.000	228	0%	439	33.9%	2	50%	possibly_damaging(0.821)	deleterious(0.05)	deleterious(0.656)	NULL
LOC647030	647030	genome.wustl.edu	37	7	131346916	131346916	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XR_017470.3	-1	model	NULL	1.000	241	0.4%	283	10.6%	39	0%	-	-	-	-
SVOPL	136306	genome.wustl.edu	37	7	138363735	138363735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001139456.1	-1	validated	p.L19P	0.051	58	0%	162	27.8%	0	-	possibly_damaging(0.797)	deleterious(0)	deleterious(0.744)	superfamily_MFS general substrate transporter
UBN2	254048	genome.wustl.edu	37	7	138936802	138936802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_173569.3	+1	validated	p.A138V	1.000	110	0%	167	20.4%	0	-	possibly_damaging(0.842)	deleterious(0.01)	deleterious(0.728)	NULL
OR9A2	135924	genome.wustl.edu	37	7	142723594	142723594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001001658.1	-1	provisional	p.P209H	0.005	208	0%	241	34.9%	0	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC728377	728377	genome.wustl.edu	37	7	143983931	143983931	+	RNA	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XR_078379.1	-1	model	NULL	0.000	633	0%	729	28.9%	10	20%	-	-	-	-
MLL3	58508	genome.wustl.edu	37	7	151921130	151921132	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_170606.2	-1	reviewed	p.E1097in_frame_del	0.979:0.981:0.125	-	-	-	-	-	-	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
RBM33	155435	genome.wustl.edu	37	7	155499636	155499636	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000392761	+1	known	p.G46D	1.000	160	0%	324	10.8%	5	40%	-	-	-	NULL
CSMD1	64478	genome.wustl.edu	37	8	2806823	2806823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_033225.5	-1	validated	p.Q3468R	1.000	164	0%	291	25.1%	0	-	benign(0.007)	tolerated(0.84)	neutral(0.001)	NULL
SGK223	157285	genome.wustl.edu	37	8	8176151	8176151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080826.1	-1	validated	p.Y1245C	1.000	28	0%	40	37.5%	22	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SGK223	157285	genome.wustl.edu	37	8	8185617	8185617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080826.1	-1	validated	p.P892L	0.347	46	0%	112	17%	9	33.3%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
LPL	4023	genome.wustl.edu	37	8	19816866	19816866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000311322	+1	known	p.E372K	1.000	219	0%	316	53.8%	1	0%	possibly_damaging(0.877)	tolerated(0.06)	deleterious(0.664)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
SORBS3	10174	genome.wustl.edu	37	8	22423920	22423920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005775.4	+1	validated	p.L338P	0.927	32	0%	47	25.5%	11	27.2%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38162846	38162846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_023034.1	-1	reviewed	p.F787S	1.000	155	0%	378	12.4%	3	33.3%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00249
AP3M2	10947	genome.wustl.edu	37	8	42025245	42025245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001134296.1	+1	reviewed	p.M358T	1.000	287	0.3%	458	28.4%	4	0%	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
PRKDC	5591	genome.wustl.edu	37	8	48691202	48691202	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000314191	-1	known	p.S3890C	1.000	51	0%	76	13.2%	50	18%	benign(0.044)	tolerated(0.29)	neutral(0.032)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
ARFGEF1	10565	genome.wustl.edu	37	8	68140340	68140340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006421.3	-1	reviewed	p.V1150A	1.000	249	0%	290	27.2%	8	25%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_ARM-type_fold
CPA6	57094	genome.wustl.edu	37	8	68334845	68334845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020361.4	-1	validated	p.G403V	1.000	356	0%	658	27.2%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
TMEM64	169200	genome.wustl.edu	37	8	91637995	91637995	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001008495.3	-1	validated	p.S349	0.975	128	0%	338	26%	6	16.6%	-	-	-	NULL
ESRP1	54845	genome.wustl.edu	37	8	95676968	95676968	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_017697.3	+1	validated	p.R230*	0.446	200	0%	443	13.5%	24	0%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TSPYL5	85453	genome.wustl.edu	37	8	98289411	98289411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_033512.2	-1	validated	p.R221M	0.999	131	0%	224	13.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_NAP
KCNS2	3788	genome.wustl.edu	37	8	99440895	99440895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020697.2	+1	provisional	p.V230M	0.997	223	0%	247	18.2%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LRP12	29967	genome.wustl.edu	37	8	105521274	105521274	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_013437.4	-1	reviewed	p.R55	0.999	96	0%	319	11%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113418813	113418813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_198123.1	-1	validated	p.R1917G	0.978	103	0%	192	20.8%	0	-	probably_damaging(0.995)	tolerated(0.27)	deleterious(0.491)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
KIAA1432	57589	genome.wustl.edu	37	9	5772699	5772699	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020829.2	+1	validated	p.E1172A	1.000	139	0%	178	17.4%	4	0%	probably_damaging(0.998)	tolerated(0.32)	deleterious(0.498)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8521494	8521494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002839.3	-1	reviewed	p.M248I	1.000	84	0%	120	33.3%	0	-	benign(0.284)	tolerated(0.58)	neutral(0.092)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
MPDZ	8777	genome.wustl.edu	37	9	13110022	13110022	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003829.3	-1	validated	p.Q1928	0.998	104	0%	140	15.7%	14	35.7%	-	-	-	NULL
FREM1	158326	genome.wustl.edu	37	9	14848699	14848699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_144966.5	-1	reviewed	p.A409T	0.881	293	0%	487	14%	1	0%	benign(0.005)	tolerated(0.99)	-	NULL
PLAA	9373	genome.wustl.edu	37	9	26928172	26928172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001031689.2	-1	validated	p.G164D	1.000	140	0%	191	10.5%	19	5.2%	unknown(0)	tolerated(0.17)	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TEK	7010	genome.wustl.edu	37	9	27220055	27220055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000459.3	+1	reviewed	p.P1038S	1.000	184	0%	342	12.9%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TOPORS	10210	genome.wustl.edu	37	9	32541534	32541534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005802.3	-1	reviewed	p.D997N	1.000	256	0.4%	326	39.3%	8	12.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FAM214B	80256	genome.wustl.edu	37	9	35107877	35107877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025182.2	-1	predicted	p.V132A	0.295	25	0%	47	38.3%	4	25%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79320472	79320472	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015225.2	-1	validated	p.Q2240*	0.006	86	0%	71	23.9%	0	-	-	-	-	NULL
DAPK1	1612	genome.wustl.edu	37	9	90263767	90263767	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004938.2	+1	reviewed	p.F467	0.188	122	0%	100	13%	21	9.5%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
C9orf174	100499483	genome.wustl.edu	37	9	100128867	100128867	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020893.1	+1	predicted	p.P1347	0.000	86	0%	108	20.4%	1	0%	-	-	-	NULL
COL15A1	1306	genome.wustl.edu	37	9	101777811	101777811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001855.3	+1	reviewed	p.L489P	0.011	38	0%	56	33.9%	5	0%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109687790	109687790	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_021224.4	+1	validated	p.M533L	0.054	326	0%	299	33.1%	1	0%	unknown(0)	tolerated(0.17)	-	superfamily_beta-sandwich domain of Sec23/24
SVEP1	79987	genome.wustl.edu	37	9	113275327	113275327	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_153366.3	-1	validated	p.C394	1.000	321	0%	546	31.1%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Growth factor receptor domain,superfamily_Complement control module/SCR domain
KIAA0368	23392	genome.wustl.edu	37	9	114199221	114199221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080398.1	-1	provisional	p.Q414R	1.000	118	0%	144	14.6%	8	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	superfamily_ARM repeat
TRAF1	7185	genome.wustl.edu	37	9	123675800	123675800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005658.3	-1	reviewed	p.E171K	0.245	14	0%	19	31.6%	3	33.3%	benign(0.025)	tolerated(0.24)	neutral(0.038)	NULL
NUP214	8021	genome.wustl.edu	37	9	134014760	134014760	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005085.2	+1	reviewed	p.V366	0.999	197	0.5%	257	38.9%	10	40%	-	-	-	NULL
FAM78A	286336	genome.wustl.edu	37	9	134136508	134136508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_033387.3	-1	validated	p.R185W	1.000	53	0%	42	21.4%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PFKP	5214	genome.wustl.edu	37	10	3124610	3124610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002627.3	+1	validated	p.R48H	1.000	77	0%	184	31.5%	40	17.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PFK,superfamily_Phosphofructokinase
FAM208B	54906	genome.wustl.edu	37	10	5789951	5789951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_017782.4	+1	validated	p.R1523G	0.000	64	0%	99	38.4%	10	60%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7269848	7269848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001029880.1	-1	provisional	p.A391V	0.877	45	0%	82	11%	0	-	benign(0.094)	deleterious(0.01)	neutral(0.413)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
KIN	22944	genome.wustl.edu	37	10	7820908	7820908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_012311.2	-1	reviewed	p.R151W	0.969	405	0.2%	821	25.2%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Kin17_mid
DCLRE1C	64421	genome.wustl.edu	37	10	14950638	14950638	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001033855.1	-1	reviewed	p.P616	0.083	393	0%	604	13.4%	5	20%	-	-	-	NULL
LOC100287578	100287578	genome.wustl.edu	37	10	17277290	17277290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XM_002342963.1	-1	model	p.S41G	0.373	101	0%	181	12.7%	1942	11.2%	-	-	-	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24874114	24874114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020824.3	-1	validated	p.T1702A	1.000	175	0%	235	15.3%	5	40%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
GPR158	57512	genome.wustl.edu	37	10	25887536	25887536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020752.2	+1	validated	p.T994I	0.048	74	0%	77	19.5%	0	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
CUL2	8453	genome.wustl.edu	37	10	35314080	35314080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003591.2	-1	provisional	p.W555L	1.000	123	0%	134	32.1%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
PGBD3	267004	genome.wustl.edu	37	10	50723827	50723827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_170753.2	-1	validated	p.I445K	0.022	51	0%	72	29.2%	2	50%	possibly_damaging(0.951)	tolerated(0.34)	neutral(0.417)	NULL
FAM21A	387680	genome.wustl.edu	37	10	51892683	51892683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001005751.1	+1	validated	p.L1335P	1.000	468	0%	731	33.8%	28	17.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HKDC1	80201	genome.wustl.edu	37	10	71000412	71000412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025130.3	+1	validated	p.M199T	0.982	88	0%	122	23.8%	52	57.6%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain
CAMK2G	818	genome.wustl.edu	37	10	75585106	75585106	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_172171.1	-1	reviewed	e14-1	1.000	79	0%	107	14%	0	-	-	-	-	-
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000371953	+1	known	p.R130G	1.000	344	0%	428	70.8%	19	89.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
TBC1D12	23232	genome.wustl.edu	37	10	96271340	96271340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015188.1	+1	validated	p.G564S	1.000	262	0%	384	15.9%	4	0%	probably_damaging(0.965)	deleterious(0.05)	deleterious(0.752)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
FAM178A	55719	genome.wustl.edu	37	10	102698360	102698360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001136123.1	+1	validated	p.S841G	1.000	376	0%	588	38.6%	4	0%	benign(0.15)	deleterious(0.02)	neutral(0.396)	NULL
C10orf2	56652	genome.wustl.edu	37	10	102749619	102749619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_021830.4	+1	reviewed	p.F488L	1.000	31	0%	43	27.9%	18	38.8%	benign(0.019)	deleterious(0)	neutral(0.446)	superfamily_P-loop containing nucleoside triphosphate hydrolases
POLL	27343	genome.wustl.edu	37	10	103345185	103345185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_013274.3	-1	reviewed	p.P154H	0.252	182	0%	289	15.9%	11	9%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	NULL
DCLRE1A	9937	genome.wustl.edu	37	10	115612564	115612564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014881.3	-1	provisional	p.Q126H	1.000	212	0%	192	15.1%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272066	1272067	+	In_Frame_Ins	INS	-	-	ACC	rs181297239	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002458.1	+1	validated	p.4659in_frame_insT	0.007:0.017	-	-	-	-	-	-	-	-	-	NULL
KRTAP5-3	387266	genome.wustl.edu	37	11	1629028	1629028	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001012708.2	-1	validated	p.Q196	0.008	319	0.3%	608	33.2%	0	-	-	-	-	NULL
LOC100288908	100288908	genome.wustl.edu	37	11	5275570	5275570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XM_002343046.1	+1	model	p.Q10*	0.987	301	0%	385	11.2%	0	-	-	-	-	NULL
CCKBR	887	genome.wustl.edu	37	11	6292308	6292308	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_176875.2	+1	reviewed	p.C293	0.997	124	0%	124	16.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DNHD1	144132	genome.wustl.edu	37	11	6568404	6568404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_144666.2	+1	provisional	p.G2079R	0.675	123	0%	158	11.4%	2	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ILK	3611	genome.wustl.edu	37	11	6625502	6625502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001014794.1	+1	reviewed	p.M1V	1.000	16	0%	20	30%	63	7.9%	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	NULL
RRAS2	22800	genome.wustl.edu	37	11	14316390	14316390	+	Missense_Mutation	SNP	T	T	A	rs113954997	byCluster	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_012250.5	-1	reviewed	p.Q72L	1.000	151	0%	314	39.2%	96	51%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPN5	84867	genome.wustl.edu	37	11	18765677	18765678	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006906.1	-1	validated	p.M56fs	0.971:0.937	-	-	-	-	-	-	-	-	-	NULL
KIF18A	81930	genome.wustl.edu	37	11	28119344	28119346	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_031217.3	-1	validated	p.E50in_frame_del	0.977:0.989:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
TRAF6	7189	genome.wustl.edu	37	11	36516536	36516536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004620.2	-1	reviewed	p.I223T	1.000	84	0%	111	13.5%	5	20%	benign(0.032)	tolerated(0.2)	neutral(0.051)	HMMPfam_zf-TRAF,superfamily_Traf_like
AGBL2	79841	genome.wustl.edu	37	11	47731941	47731941	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024783.2	-1	validated	p.E74*	0.989	335	0%	490	33.5%	0	-	-	-	-	NULL
OR4C3	256144	genome.wustl.edu	37	11	48346597	48346597	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001004702.1	+1	provisional	p.T35	0.004	379	0%	426	23.2%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR4A16	81327	genome.wustl.edu	37	11	55111658	55111658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001005274.1	+1	provisional	p.R328W	0.000	44	0%	22	27.3%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
P2RX3	5024	genome.wustl.edu	37	11	57135903	57135903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002559.2	+1	reviewed	p.V332A	1.000	49	0%	92	15.2%	1	100%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	HMMPfam_P2X_receptor
DAK	26007	genome.wustl.edu	37	11	61109940	61109940	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015533.3	+1	reviewed	p.H221	0.975	22	0%	27	37%	45	13.3%	-	-	-	HMMPfam_Dak1,superfamily_DAK1/DegV-like
SLC3A2	6520	genome.wustl.edu	37	11	62655998	62655998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001012661.1	+1	reviewed	p.A607T	0.004	36	0%	73	17.8%	233	30.9%	benign(0.032)	tolerated(0.28)	neutral(0.033)	superfamily_Glycosyl hydrolase domain
C11orf84	144097	genome.wustl.edu	37	11	63586354	63586354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_138471.1	+1	predicted	p.A272T	0.477	56	0%	59	11.9%	27	14.8%	benign(0.401)	tolerated(0.08)	neutral(0.429)	NULL
NAA40	79829	genome.wustl.edu	37	11	63721843	63721843	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024771.2	+1	validated	p.S202	0.883	52	0%	56	39.3%	11	18.1%	-	-	-	NULL
ATG2A	23130	genome.wustl.edu	37	11	64670768	64670768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015104.2	-1	validated	p.G1202S	1.000	26	0%	17	29.4%	12	33.3%	benign(0.007)	tolerated(0.13)	neutral(0.253)	NULL
SF3B2	10992	genome.wustl.edu	37	11	65829168	65829168	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006842.2	+1	reviewed	p.F597	1.000	247	0%	438	37.2%	152	41.4%	-	-	-	HMMPfam_DUF382
ACTN3	89	genome.wustl.edu	37	11	66319010	66319010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001104.1	+1	reviewed	p.P92S	1.000	126	0%	136	16.2%	0	-	benign(0.137)	deleterious(0.03)	neutral(0.376)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MYEOV	26579	genome.wustl.edu	37	11	69062908	69062908	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_138768.2	+1	validated	p.P29	0.000	86	0%	169	20.7%	22	31.8%	-	-	-	NULL
ARAP1	116985	genome.wustl.edu	37	11	72406076	72406076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001040118.2	-1	reviewed	p.R1215G	0.959	104	0%	181	12.2%	42	21.4%	benign(0.006)	tolerated(0.4)	neutral(0.016)	HMMPfam_RA
FAM168A	23201	genome.wustl.edu	37	11	73179451	73179451	+	Silent	SNP	C	C	A	rs144949543	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015159.1	-1	predicted	p.T23	0.983	235	0%	271	26.2%	21	14.2%	-	-	-	NULL
PPME1	51400	genome.wustl.edu	37	11	73936272	73936272	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016147.1	+1	provisional	p.P123	0.996	175	0%	194	9.8%	21	14.2%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
UVRAG	7405	genome.wustl.edu	37	11	75562928	75562928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003369.3	+1	reviewed	p.R40W	0.998	264	0%	274	13.9%	1	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_C2_CaLB
ODZ4	26011	genome.wustl.edu	37	11	78516488	78516488	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001098816.2	-1	validated	p.G676	0.977	101	0%	136	19.9%	0	-	-	-	-	HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196
TMEM135	65084	genome.wustl.edu	37	11	86782584	86782584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_022918.3	+1	validated	p.Y97H	1.000	100	0%	117	43.6%	3	66.6%	probably_damaging(0.997)	tolerated(0.2)	deleterious(0.515)	NULL
MTMR2	8898	genome.wustl.edu	37	11	95581055	95581055	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016156.5	-1	reviewed	p.G334	0.604	407	0%	435	11.3%	6	0%	-	-	-	HMMPfam_Myotub-related,superfamily_SSF52799
ATM	472	genome.wustl.edu	37	11	108236203	108236203	+	Nonsense_Mutation	SNP	C	C	T	rs121434219		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000051.3	+1	reviewed	p.R3047*	1.000	361	0%	458	23.1%	6	50%	-	-	-	HMMPfam_FATC
ARHGAP20	57569	genome.wustl.edu	37	11	110450933	110450933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020809.2	-1	validated	p.S913G	0.010	179	0%	214	35.5%	0	-	benign(0.401)	deleterious(0)	deleterious(0.574)	NULL
ZBTB16	7704	genome.wustl.edu	37	11	114121046	114121046	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001018011.1	+1	reviewed	e6-2	1.000	111	0%	116	15.5%	0	-	-	-	-	-
TECTA	7007	genome.wustl.edu	37	11	121037403	121037406	+	Frame_Shift_Del	DEL	GACA	GACA	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	GACA	GACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005422.2	+1	reviewed	p.R1835fs	1.000:1.000:1.000:0.981	-	-	-	-	-	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
C11orf63	79864	genome.wustl.edu	37	11	122774678	122774678	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024806.2	+1	validated	p.P130	0.234	31	0%	51	25.5%	6	16.6%	-	-	-	NULL
ZNF202	7753	genome.wustl.edu	37	11	123598185	123598185	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003455.2	-1	validated	p.T317	1.000	172	0%	271	13.7%	1	0%	-	-	-	NULL
KIRREL3	84623	genome.wustl.edu	37	11	126306799	126306799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032531.3	-1	reviewed	p.N487D	1.000	203	0%	290	13.1%	0	-	benign(0.003)	tolerated(0.44)	neutral(0.013)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MFAP5	8076	genome.wustl.edu	37	12	8800752	8800752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003480.2	-1	reviewed	p.R153C	0.898	220	0%	357	38.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
A2ML1	144568	genome.wustl.edu	37	12	9020613	9020613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_144670.3	+1	validated	p.Y1298C	0.583	140	0%	172	36.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
A2M	2	genome.wustl.edu	37	12	9229527	9229527	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000014.4	-1	reviewed	p.P1119	0.980	127	0.8%	155	36.1%	240	0.4%	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
PLCZ1	89869	genome.wustl.edu	37	12	18849094	18849094	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_033123.2	-1	provisional	p.G427	0.995	236	0%	304	30.6%	0	-	-	-	-	HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
PDE3A	5139	genome.wustl.edu	37	12	20766581	20766581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000921.3	+1	validated	p.T406A	0.993	85	0%	90	37.8%	0	-	benign(0.036)	tolerated(0.37)	neutral(0.021)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40715873	40715873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_198578.3	+1	reviewed	p.Q1736R	1.000	145	0%	159	34%	0	-	benign(0.092)	tolerated(0.3)	neutral(0.036)	NULL
CERS5	91012	genome.wustl.edu	37	12	50536964	50536964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_147190.2	-1	provisional	p.E109D	0.962	124	0%	151	25.8%	11	27.2%	benign(0.008)	tolerated(0.52)	neutral(0.009)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CSAD	51380	genome.wustl.edu	37	12	53573574	53573574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015989.4	-1	validated	p.S7P	0.000	87	0%	92	16.3%	1	0%	benign(0.205)	-	-	NULL
PHC1P1	653441	genome.wustl.edu	37	12	55807469	55807469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000326184	-1	known	p.M351T	0.996	280	0.4%	287	9.4%	16	0%	-	-	-	NULL
HSD17B6	8630	genome.wustl.edu	37	12	57180967	57180967	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003725.2	+1	reviewed	p.T265	0.005	104	0%	175	38.9%	1	0%	-	-	-	superfamily_NAD(P)-bd
LRP1	4035	genome.wustl.edu	37	12	57548391	57548391	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002332.2	+1	reviewed	p.S378	1.000	65	0%	110	14.5%	8	12.5%	-	-	-	HMMSmart_SM00135,superfamily_YWTD domain
MYF6	4618	genome.wustl.edu	37	12	81102367	81102367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002469.2	+1	reviewed	p.R195M	1.000	41	0%	63	12.7%	0	-	probably_damaging(0.979)	tolerated(0.11)	deleterious(0.694)	NULL
METAP2	10988	genome.wustl.edu	37	12	95906632	95906632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006838.3	+1	reviewed	p.H375R	1.000	420	0%	621	15.6%	45	15.5%	benign(0.004)	tolerated(0.47)	neutral(0.011)	"HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase,superfamily_""Winged helix"" DNA-binding domain"
C12orf51	283450	genome.wustl.edu	37	12	112666017	112666017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001109662.2	-1	validated	p.A1822T	1.000	96	0%	117	12%	3	33.3%	possibly_damaging(0.922)	-	-	NULL
PTPN11	5781	genome.wustl.edu	37	12	112893822	112893822	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002834.3	+1	reviewed	p.A237	0.537	178	0%	247	13.8%	8	25%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
OAS3	4940	genome.wustl.edu	37	12	113388733	113388733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006187.2	+1	reviewed	p.L537P	0.000	92	0%	100	13%	5	0%	benign(0.002)	deleterious(0.02)	neutral(0.383)	superfamily_Nucleotidyltransferase
TPCN1	53373	genome.wustl.edu	37	12	113722406	113722406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001143819.1	+1	validated	p.G527R	0.998	233	0%	207	16.4%	6	16.6%	probably_damaging(0.993)	tolerated(0.22)	deleterious(0.492)	superfamily_Voltage-gated potassium channels
RNF10	9921	genome.wustl.edu	37	12	121001294	121001294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014868.4	+1	reviewed	p.C467R	0.999	125	0%	147	19%	98	28.5%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
SGCG	6445	genome.wustl.edu	37	13	23898584	23898584	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000231.2	+1	reviewed	p.S260	0.970	61	0%	92	34.8%	0	-	-	-	-	HMMPfam_Sarcoglycan_1
SACS	26278	genome.wustl.edu	37	13	23929831	23929831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014363.4	-1	reviewed	p.L307P	1.000	202	0%	198	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
PARP4	143	genome.wustl.edu	37	13	25009165	25009165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006437.3	-1	reviewed	p.T1372A	0.000	59	0%	48	22.9%	58	58.6%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
KBTBD7	84078	genome.wustl.edu	37	13	41767896	41767896	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032138.4	-1	provisional	p.R166	0.998	104	0%	101	29.7%	11	36.3%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
HTR2A	3356	genome.wustl.edu	37	13	47466579	47466579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000621.3	-1	reviewed	p.N187D	1.000	245	0%	220	11.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SERPINE3	647174	genome.wustl.edu	37	13	51936022	51936022	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001101320.1	+1	validated	p.P388	0.016	265	0.4%	285	9.8%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
LOC643677	643677	genome.wustl.edu	37	13	103381991	103381991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XM_002344085.1	-1	model	p.C6867Y	0.987	405	0.2%	318	32.1%	0	-	unknown(0)	deleterious(0)	-	NULL
LAMP1	3916	genome.wustl.edu	37	13	113976677	113976677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005561.3	+1	reviewed	p.V399I	1.000	41	0%	58	29.3%	523	43.2%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Lamp,PatternScan_LAMP_2
GRTP1	79774	genome.wustl.edu	37	13	114005277	114005277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024719.2	-1	validated	p.T118A	1.000	48	0%	91	11%	17	5.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
OR4E2	26686	genome.wustl.edu	37	14	22133397	22133397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001001912.1	+1	validated	p.I34T	0.000	392	0%	614	35.7%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_SSF81321
TM9SF1	10548	genome.wustl.edu	37	14	24662046	24662046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006405.5	-1	validated	p.R259C	1.000	144	0%	177	20.3%	71	21.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EMP70
AKAP6	9472	genome.wustl.edu	37	14	33015240	33015240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004274.4	+1	reviewed	p.K461E	0.844	116	0%	125	26.4%	0	-	possibly_damaging(0.512)	deleterious(0)	deleterious(0.617)	NULL
SIX4	51804	genome.wustl.edu	37	14	61190758	61190759	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_017420.4	-1	reviewed	p.S12fs	0.993:1.000	-	-	-	-	-	-	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71444260	71444260	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014982.2	+1	validated	p.S402	0.826	101	0%	134	27.6%	3	33.3%	-	-	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72152239	72152239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015556.1	+1	provisional	p.M1089V	1.000	141	0%	190	37.4%	8	25%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
ENSG00000248570	0	genome.wustl.edu	37	14	73744054	73744054	+	RNA	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000504856	+1	novel	NULL	0.000	15	0%	16	43.8%	4	0%	-	-	-	-
CYP46A1	10858	genome.wustl.edu	37	14	100191800	100191800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006668.1	+1	reviewed	p.G417S	0.956	49	0%	89	40.4%	0	-	benign(0)	tolerated(0.97)	-	HMMPfam_p450,superfamily_Cytochrome_P450
RTL1	388015	genome.wustl.edu	37	14	101348319	101348319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001134888.2	-1	reviewed	p.R936H	1.000	11	0%	23	39.1%	0	-	probably_damaging(1)	tolerated(0.67)	deleterious(0.502)	superfamily_DNA/RNA polymerases
IGHV3-20	28445	genome.wustl.edu	37	14	106667857	106667857	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000390606	-1	known	p.E25	0.995	428	0%	299	37.1%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
IGHV3-49	28423	genome.wustl.edu	37	14	107013185	107013185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000390625	-1	known	p.L37P	0.032	216	0.5%	224	12.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
GABRA5	2558	genome.wustl.edu	37	15	27188394	27188394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000810.3	+1	reviewed	p.S304R	1.000	40	0%	61	13.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
TRPM1	4308	genome.wustl.edu	37	15	31342635	31342635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002420.4	-1	reviewed	p.R450G	1.000	1407	0.1%	1816	35.8%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32926189	32926189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014783.3	+1	validated	p.V431F	1.000	127	0%	113	32.7%	1	0%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
RYR3	6263	genome.wustl.edu	37	15	34130266	34130266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001036.3	+1	validated	p.L4029I	1.000	75	0%	90	17.8%	0	-	probably_damaging(0.998)	-	-	NULL
GJD2	57369	genome.wustl.edu	37	15	35045197	35045197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020660.1	-1	provisional	p.V150M	1.000	75	0%	67	22.4%	0	-	benign(0.006)	tolerated(0.24)	neutral(0.037)	NULL
FAM92A1P1	729073	genome.wustl.edu	37	15	41455618	41455618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000287660	+1	known	p.E87K	0.987	64	0%	83	39.8%	0	-	-	-	-	HMMPfam_DUF1208
MGA	23269	genome.wustl.edu	37	15	41962043	41962043	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080541.2	+1	validated	p.S317	0.944	239	0%	244	10.7%	1	100%	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42003484	42003484	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080541.2	+1	validated	p.K1007	1.000	62	0%	92	41.3%	2	50%	-	-	-	NULL
TTBK2	146057	genome.wustl.edu	37	15	43038149	43038149	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_173500.3	-1	reviewed	p.S1193	1.000	304	0%	486	21%	2	50%	-	-	-	NULL
CASC4	113201	genome.wustl.edu	37	15	44695246	44695246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_138423.2	+1	reviewed	p.V412I	1.000	120	0%	343	41.4%	20	60%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
MYEF2	50804	genome.wustl.edu	37	15	48443671	48443671	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016132.3	-1	validated	p.L435	1.000	310	0%	348	15.8%	24	25%	-	-	-	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48593519	48593519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000338.2	+1	reviewed	p.R1035H	1.000	108	0%	153	20.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP8B4	79895	genome.wustl.edu	37	15	50279722	50279722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024837.2	-1	validated	p.N205S	1.000	111	0%	193	36.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
ITGA11	22801	genome.wustl.edu	37	15	68620498	68620498	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001004439.1	-1	reviewed	p.C668	1.000	89	0%	153	11.8%	10	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
KIF23	9493	genome.wustl.edu	37	15	69732334	69732334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_138555.1	+1	reviewed	p.R602Q	1.000	271	0%	380	11.6%	3	33.3%	benign(0.041)	tolerated(1)	neutral(0.003)	NULL
MAN2C1	4123	genome.wustl.edu	37	15	75648330	75648330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006715.2	-1	validated	p.L1014I	0.002	93	0%	76	13.2%	50	20%	benign(0.021)	tolerated(0.25)	neutral(0.038)	HMMPfam_Glyco_hydro_38C
ACAN	176	genome.wustl.edu	37	15	89400743	89400743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_013227.3	+1	reviewed	p.P1528S	0.982	63	0%	55	20%	2	0%	benign(0.005)	tolerated(0.29)	neutral(0.029)	NULL
RHCG	51458	genome.wustl.edu	37	15	90016028	90016036	+	In_Frame_Del	DEL	CTGAGGGTC	CTGAGGGTC	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	CTGAGGGTC	CTGAGGGTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016321.1	-1	provisional	p.GPS457in_frame_del	0.000:0.000:0.001:0.000:0.000:0.004:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ENSG00000214394	0	genome.wustl.edu	37	15	100332619	100332619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000398270	+1	known	p.S79N	0.999	99	0%	170	10%	0	-	-	-	-	NULL
ACSM2A	123876	genome.wustl.edu	37	16	20494407	20494407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001010845.2	+1	validated	p.S513P	0.928	366	0%	586	33.1%	0	-	benign(0)	tolerated(1)	-	superfamily_Acetyl-CoA synthetase-like
DCUN1D3	123879	genome.wustl.edu	37	16	20873795	20873795	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_173475.2	-1	validated	p.R22	1.000	234	0%	273	15.4%	3	33.3%	-	-	-	NULL
ENSG00000248124	0	genome.wustl.edu	37	16	21831680	21831680	+	RNA	DEL	A	A	-	rs140138439	byCluster;by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000514813	-1	novel	NULL	0.645	-	-	-	-	-	-	-	-	-	-
ENSG00000198229	0	genome.wustl.edu	37	16	32077607	32077607	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000354689	+1	known	p.N74	0.909	238	0%	317	15.1%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
LONP2	83752	genome.wustl.edu	37	16	48296766	48296766	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_031490.2	+1	provisional	p.W322*	1.000	197	0%	214	34.6%	4	0%	-	-	-	superfamily_SSF52540
NKD1	85407	genome.wustl.edu	37	16	50667175	50667175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_033119.3	+1	provisional	p.E299G	1.000	127	0%	129	33.3%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MT1M	4499	genome.wustl.edu	37	16	56667745	56667745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_176870.2	+1	validated	p.C59W	0.981	135	0%	160	20%	1	0%	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	HMMPfam_Metallothio,superfamily_Metallothionein_sfam
CX3CL1	6376	genome.wustl.edu	37	16	57416764	57416764	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002996.3	+1	provisional	p.T338	0.901	88	0%	91	37.4%	56	44.6%	-	-	-	NULL
CNOT1	23019	genome.wustl.edu	37	16	58583783	58583783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016284.3	-1	validated	p.T1121M	1.000	173	0%	183	40.4%	5	20%	possibly_damaging(0.909)	tolerated(0.23)	neutral(0.403)	NULL
GOT2	2806	genome.wustl.edu	37	16	58752173	58752173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002080.2	-1	reviewed	p.H210R	1.000	138	0%	189	43.4%	54	46.2%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
CTCF	10664	genome.wustl.edu	37	16	67646012	67646013	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006565.2	+1	reviewed	p.T318fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CTCF	10664	genome.wustl.edu	37	16	67655479	67655479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006565.2	+1	reviewed	p.R448*	1.000	264	0%	394	13.7%	15	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HYDIN	54768	genome.wustl.edu	37	16	70918018	70918018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032821.2	-1	validated	p.A3261T	0.904	93	0%	144	34.7%	2	50%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
TAT	6898	genome.wustl.edu	37	16	71606455	71606455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000353.2	-1	reviewed	p.E182G	1.000	149	0%	138	21%	0	-	benign(0.045)	deleterious(0.04)	neutral(0.351)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ZZEF1	23140	genome.wustl.edu	37	17	4007995	4007995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015113.3	-1	validated	p.T502M	0.998	94	0%	411	25.1%	2	100%	possibly_damaging(0.944)	tolerated(0.22)	neutral(0.430)	NULL
WSCD1	23302	genome.wustl.edu	37	17	6023766	6023766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015253.1	+1	validated	p.V505M	1.000	50	0%	46	19.6%	2	50%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	superfamily_SSF52540
ALOX12	239	genome.wustl.edu	37	17	6909220	6909220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000697.2	+1	validated	p.R431Q	0.982	57	0%	159	11.9%	0	-	benign(0.008)	tolerated(0.24)	neutral(0.037)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
C17orf49	124944	genome.wustl.edu	37	17	6920605	6920605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001142798.1	+1	validated	p.M182V	0.999	346	0%	611	25.9%	236	31.7%	benign(0.01)	deleterious(0.02)	neutral(0.384)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7663220	7663220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020877.2	+1	validated	p.R917C	0.909	478	0%	744	26.6%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_Spectrin repeat
DNAH2	146754	genome.wustl.edu	37	17	7671305	7671305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020877.2	+1	validated	p.L1255M	1.000	67	0%	161	24.2%	0	-	probably_damaging(0.986)	tolerated(0.19)	deleterious(0.484)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7710589	7710589	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020877.2	+1	validated	p.R3188	0.000	90	0%	178	29.2%	1	100%	-	-	-	NULL
AURKB	9212	genome.wustl.edu	37	17	8108285	8108285	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004217.2	-1	validated	p.S313	0.000	94	0%	231	19.9%	28	14.2%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MYH13	8735	genome.wustl.edu	37	17	10216654	10216654	+	Silent	SNP	C	C	T	rs182736288	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003802.2	-1	validated	p.A1334	0.999	256	0.4%	282	10.6%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10358321	10358321	+	Missense_Mutation	SNP	C	C	T	rs144778193	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_017533.2	-1	validated	p.R791H	0.838	44	0%	98	31.6%	0	-	benign(0.011)	tolerated(0.54)	neutral(0.008)	HMMSmart_IQ,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10416221	10416221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005963.3	-1	reviewed	p.F289L	1.000	257	0%	353	17%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
SHISA6	388336	genome.wustl.edu	37	17	11461430	11461430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_207386.3	+1	validated	p.R489C	1.000	59	0%	107	24.3%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11651018	11651018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001372.3	+1	reviewed	p.P2182L	1.000	68	0%	168	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHRS7B	25979	genome.wustl.edu	37	17	21075455	21075455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015510.3	+1	validated	p.Y49H	0.999	52	0%	59	22%	57	24.5%	probably_damaging(0.956)	tolerated(0.51)	neutral(0.409)	NULL
ZNF207	7756	genome.wustl.edu	37	17	30696705	30696705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001098507.1	+1	validated	p.P471H	1.000	132	0%	203	18.7%	231	27.2%	unknown(0)	deleterious(0)	-	NULL
ENSG00000226049	0	genome.wustl.edu	37	17	32365902	32365902	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000430493	-1	known	p.Q273E	0.959	273	0%	203	21.2%	2	0%	-	-	-	NULL
TMEM132E	124842	genome.wustl.edu	37	17	32964326	32964326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_207313.1	+1	provisional	p.R677Q	1.000	35	0%	21	28.6%	0	-	benign(0.142)	tolerated(0.58)	neutral(0.017)	NULL
MYO19	80179	genome.wustl.edu	37	17	34863727	34863727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025109.5	-1	validated	p.D423G	0.003	61	0%	107	10.3%	7	14.2%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
GPR179	440435	genome.wustl.edu	37	17	36486428	36486428	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001004334.2	-1	validated	p.P1008	0.028	31	0%	60	20%	0	-	-	-	-	NULL
CACNB1	782	genome.wustl.edu	37	17	37331531	37331531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000723.3	-1	reviewed	p.R571H	1.000	71	0%	184	27.7%	3	0%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
KRT16	3868	genome.wustl.edu	37	17	39768852	39768852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005557.3	-1	reviewed	p.R30H	0.204	139	0%	133	20.3%	0	-	unknown(0)	deleterious(0)	-	NULL
HSD17B1	3292	genome.wustl.edu	37	17	40705511	40705511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000413.2	+1	validated	p.A107V	0.002	34	0%	54	24.1%	26	42.3%	possibly_damaging(0.85)	tolerated(0.23)	neutral(0.368)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
NME1	4830	genome.wustl.edu	37	17	49239204	49239204	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_198175.1	+1	reviewed	p.*178R	1.000	167	0%	385	23.1%	430	16.5%	-	-	-	NULL
CLTC	1213	genome.wustl.edu	37	17	57761095	57761095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004859.3	+1	reviewed	p.R1434H	1.000	215	0%	360	26.7%	220	35%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
RPS6KB1	6198	genome.wustl.edu	37	17	58011589	58011590	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003161.2	+1	reviewed	p.T252fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
INTS2	57508	genome.wustl.edu	37	17	59984803	59984803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020748.2	-1	validated	p.L391M	1.000	159	0%	419	16.5%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TMC6	11322	genome.wustl.edu	37	17	76109696	76109696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001127198.1	-1	reviewed	p.D763N	1.000	67	0%	90	14.4%	28	3.5%	probably_damaging(0.991)	tolerated(0.35)	neutral(0.465)	NULL
EIF4A3	9775	genome.wustl.edu	37	17	78111190	78111190	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014740.3	-1	reviewed	p.G326	0.381	158	0%	524	27.9%	163	26.3%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
RPTOR	57521	genome.wustl.edu	37	17	78617612	78617612	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020761.2	+1	reviewed	e3+2	1.000	131	0%	169	12.4%	0	-	-	-	-	-
METTL4	64863	genome.wustl.edu	37	18	2539073	2539073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_022840.3	-1	validated	p.W449R	1.000	204	0%	213	28.6%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MT-A70
TUBB6	84617	genome.wustl.edu	37	18	12325675	12325675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032525.1	+1	provisional	p.A296V	1.000	56	0%	38	28.9%	27	18.5%	benign(0.085)	deleterious(0)	neutral(0.451)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
RBBP8	5932	genome.wustl.edu	37	18	20577587	20577587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002894.2	+1	reviewed	p.G678D	0.940	140	0%	117	29.9%	30	50%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
DSC2	1824	genome.wustl.edu	37	18	28669485	28669485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024422.3	-1	reviewed	p.R183W	0.000	169	0%	213	38%	6	83.3%	possibly_damaging(0.836)	tolerated(0.08)	deleterious(0.619)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FHOD3	80206	genome.wustl.edu	37	18	34238078	34238078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025135.2	+1	validated	p.P413S	0.001	322	0%	360	16.9%	2	0%	possibly_damaging(0.448)	tolerated(0.49)	neutral(0.157)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42618465	42618465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015559.2	+1	validated	p.H1339R	1.000	211	0%	441	16.6%	0	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44139514	44139514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_144612.6	-1	reviewed	p.T760I	1.000	176	0%	250	16.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
NEDD4L	23327	genome.wustl.edu	37	18	55996314	55996314	+	Missense_Mutation	SNP	C	C	A	rs183766749	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001144967.1	+1	validated	p.S256R	0.766	42	0%	59	11.9%	11	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56203428	56203428	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_052947.3	-1	validated	p.R1331	0.003	89	0%	79	13.9%	1	0%	-	-	-	NULL
CDH7	1005	genome.wustl.edu	37	18	63511232	63511232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004361.2	+1	reviewed	p.A389V	0.996	147	0%	204	17.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Cadherin,superfamily_Cadherin-like
RTTN	25914	genome.wustl.edu	37	18	67672445	67672445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_173630.3	-1	validated	p.L2195S	0.993	412	0%	540	36.5%	3	66.6%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
FAM69C	125704	genome.wustl.edu	37	18	72113871	72113871	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001044369.2	-1	validated	p.P282	0.235	45	0%	63	34.9%	0	-	-	-	-	NULL
MBP	4155	genome.wustl.edu	37	18	74692415	74692415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001025101.1	-1	reviewed	p.S295G	0.978	70	0%	94	39.4%	0	-	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	HMMPfam_Myelin_MBP
MBP	4155	genome.wustl.edu	37	18	74778254	74778254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001025101.1	-1	reviewed	p.G47R	0.909	172	0%	195	32.8%	36	52.7%	benign(0.047)	deleterious(0)	neutral(0.448)	NULL
ATP9B	374868	genome.wustl.edu	37	18	76873280	76873280	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_198531.3	+1	validated	p.F162I	1.000	136	0%	174	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EEF2	1938	genome.wustl.edu	37	19	3981983	3981983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001961.3	-1	reviewed	p.R287C	0.913	34	0%	38	39.5%	1040	46.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPRS	5802	genome.wustl.edu	37	19	5258063	5258063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002850.3	-1	reviewed	p.V224A	1.000	75	0%	79	31.6%	131	54.1%	probably_damaging(0.957)	tolerated(0.12)	deleterious(0.661)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
FUT3	2525	genome.wustl.edu	37	19	5844598	5844598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000149.3	-1	reviewed	p.V85L	0.000	98	0%	90	35.6%	2	100%	benign(0)	tolerated(0.77)	neutral(0.001)	HMMPfam_Glyco_transf_10
TUBB4A	10382	genome.wustl.edu	37	19	6501636	6501636	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006087.2	-1	provisional	e2-2	0.995	99	0%	137	10.9%	0	-	-	-	-	-
STXBP2	6813	genome.wustl.edu	37	19	7712321	7712321	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006949.2	+1	reviewed	p.G540	0.091	21	0%	35	45.7%	89	39.3%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
MUC16	94025	genome.wustl.edu	37	19	9057122	9057122	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024690.2	-1	validated	p.G10108	0.000	125	0%	179	20.7%	0	-	-	-	-	NULL
TSPAN16	26526	genome.wustl.edu	37	19	11409564	11409564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_012466.2	+1	reviewed	p.V95A	0.002	96	0%	184	12%	0	-	possibly_damaging(0.844)	tolerated(0.13)	deleterious(0.576)	HMMPfam_Tetraspannin
LPHN1	22859	genome.wustl.edu	37	19	14263122	14263122	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001008701.2	-1	reviewed	p.P1221	1.000	105	0%	157	33.8%	22	59%	-	-	-	HMMPfam_Latrophilin
OR1I1	126370	genome.wustl.edu	37	19	15198697	15198697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001004713.1	+1	provisional	p.A274V	0.010	133	0%	192	17.7%	0	-	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	HMMPfam_7tm_1,superfamily_SSF81321
EPS15L1	58513	genome.wustl.edu	37	19	16496008	16496008	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_021235.1	-1	provisional	p.L727I	0.031	36	0%	49	28.6%	15	26.6%	possibly_damaging(0.872)	tolerated(0.24)	neutral(0.377)	NULL
ELL	8178	genome.wustl.edu	37	19	18569135	18569135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006532.3	-1	validated	p.A250V	1.000	28	0%	55	34.5%	16	18.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELL
GPATCH1	55094	genome.wustl.edu	37	19	33584391	33584391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_018025.2	+1	provisional	p.A141T	1.000	82	0%	126	11.9%	2	0%	benign(0.015)	tolerated(0.67)	neutral(0.003)	NULL
CHST8	64377	genome.wustl.edu	37	19	34263410	34263410	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001127895.1	+1	validated	p.F239	1.000	10	0%	24	37.5%	0	-	-	-	-	HMMPfam_Sulfotransfer_2
RYR1	6261	genome.wustl.edu	37	19	38956904	38956904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000540.2	+1	reviewed	p.R1015H	0.996	70	0%	96	24%	0	-	probably_damaging(0.995)	-	-	HMMPfam_RyR
PLD3	23646	genome.wustl.edu	37	19	40873764	40873764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001031696.2	+1	validated	p.T136M	1.000	18	0%	30	23.3%	190	29.4%	probably_damaging(0.985)	tolerated(0.22)	deleterious(0.474)	superfamily_SSF56024
ZNF526	116115	genome.wustl.edu	37	19	42729223	42729223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_133444.1	+1	provisional	p.L223P	0.603	113	0%	184	10.3%	5	20%	probably_damaging(0.991)	tolerated(0.28)	deleterious(0.476)	superfamily_C2H2 and C2HC zinc fingers
PGLYRP1	8993	genome.wustl.edu	37	19	46526032	46526032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005091.2	-1	validated	p.Y83C	0.884	51	0%	56	19.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP
SLC8A2	6543	genome.wustl.edu	37	19	47969174	47969174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_015063.2	-1	validated	p.G163S	0.997	28	0%	45	44.4%	0	-	benign(0.056)	tolerated(1)	neutral(0.004)	HMMPfam_Na_Ca_ex
KCNC3	3748	genome.wustl.edu	37	19	50827145	50827145	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004977.2	-1	reviewed	p.C355	1.000	64	0%	114	36%	5	40%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
ASPDH	554235	genome.wustl.edu	37	19	51017736	51017736	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001024656.2	-1	validated	p.R11	0.970	161	0%	234	35.5%	0	-	-	-	-	NULL
ZSCAN5B	342933	genome.wustl.edu	37	19	56701626	56701626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001080456.2	-1	validated	p.P353L	0.000	335	0%	413	14%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_SSF57667
NRSN2	80023	genome.wustl.edu	37	20	334251	334251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_024958.2	+1	validated	p.Q196R	1.000	93	0%	221	33.9%	37	40.5%	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	NULL
PTPRA	5786	genome.wustl.edu	37	20	2985775	2985775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002836.3	+1	reviewed	p.Y271C	1.000	463	0.2%	563	20.1%	18	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
FERMT1	55612	genome.wustl.edu	37	20	6057923	6057923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_017671.4	-1	reviewed	p.H644R	1.000	90	0%	118	32.2%	5	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C20orf94	128710	genome.wustl.edu	37	20	10541391	10541391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001009608.1	+1	validated	p.Q54R	1.000	150	0%	159	32.1%	1	0%	benign(0.013)	tolerated(0.4)	neutral(0.017)	NULL
NAA20	51126	genome.wustl.edu	37	20	20007525	20007525	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016100.3	+1	validated	p.A89	1.000	478	0%	438	19.6%	110	30%	-	-	-	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
NDRG3	57446	genome.wustl.edu	37	20	35335380	35335380	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_032013.2	-1	validated	p.C30G	1.000	86	0%	145	34.5%	11	54.5%	benign(0)	tolerated(0.35)	neutral(0.021)	superfamily_alpha/beta-Hydrolases
C20orf132	140699	genome.wustl.edu	37	20	35731161	35731161	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000343811	-1	known	p.W1046*	0.001	136	0%	268	13.4%	1	0%	benign(0.14)	tolerated(0.14)	neutral(0.262)	NULL
PTPRT	11122	genome.wustl.edu	37	20	40877391	40877391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_133170.3	-1	reviewed	p.V769M	1.000	153	0%	318	34.3%	0	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	NULL
SEMG1	6406	genome.wustl.edu	37	20	43836412	43836412	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_003007.3	+1	reviewed	p.Q158	0.001	155	0%	244	34.8%	0	-	-	-	-	HMMPfam_Semenogelin
C20orf43	51507	genome.wustl.edu	37	20	55088375	55088375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016407.3	+1	validated	p.G161V	0.999	166	0%	220	23.2%	78	20.5%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_DUF602
CTCFL	140690	genome.wustl.edu	37	20	56093924	56093924	+	Missense_Mutation	SNP	C	C	T	rs143392924		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_080618.2	-1	reviewed	p.D317N	1.000	61	0%	131	15.3%	0	-	possibly_damaging(0.827)	tolerated(0.07)	deleterious(0.633)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CTCFL	140690	genome.wustl.edu	37	20	56094333	56094333	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_080618.2	-1	reviewed	p.H285	0.056	45	0%	110	19.1%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RAB22A	57403	genome.wustl.edu	37	20	56934722	56934722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020673.2	+1	reviewed	p.R183Q	0.996	100	0%	139	10.8%	18	11.1%	benign(0.044)	tolerated(0.67)	neutral(0.005)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAJC5	80331	genome.wustl.edu	37	20	62562311	62562311	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_025219.1	+1	provisional	p.G143	0.982	39	0%	74	41.9%	43	46.5%	-	-	-	NULL
LOC100288017	100288017	genome.wustl.edu	37	21	14568577	14568577	+	Silent	SNP	C	C	T	rs138720314	by1000genomes	TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XM_002343737.1	+1	model	p.D70	0.007	4	0.000	28	0.429	0	-	-	-	-	NULL
CXADR	1525	genome.wustl.edu	37	21	18919407	18919407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001338.3	+1	reviewed	p.T36A	1.000	77	0%	122	30.3%	28	46.4%	benign(0.143)	tolerated(0.16)	neutral(0.072)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CBR1	873	genome.wustl.edu	37	21	37444776	37444776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001757.2	+1	reviewed	p.V144I	0.000	47	0%	60	26.7%	92	44.5%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
RIPK4	54101	genome.wustl.edu	37	21	43161792	43161792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_020639.2	-1	reviewed	p.R521fs	0.882	-	-	-	-	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
C21orf56	84221	genome.wustl.edu	37	21	47588451	47588451	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001142854.1	-1	validated	p.G105	0.880	18	0%	39	38.5%	21	47.6%	-	-	-	NULL
IGLV2-33	28811	genome.wustl.edu	37	22	22931030	22931030	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000390302	+1	known	p.R75	0.000	219	0%	305	14.1%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
MMP11	4320	genome.wustl.edu	37	22	24121572	24121572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_005940.3	+1	reviewed	p.G103R	0.982	15	0%	17	41.2%	196	2.5%	unknown(0)	deleterious(0)	-	"HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
UPB1	51733	genome.wustl.edu	37	22	24909392	24909392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016327.2	+1	reviewed	p.S187F	0.992	68	0%	92	19.6%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
GAS2L1	10634	genome.wustl.edu	37	22	29704500	29704500	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_152237.1	+1	reviewed	p.S135	0.981	38	0%	31	32.3%	41	21.9%	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
NEFH	4744	genome.wustl.edu	37	22	29884940	29884940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_021076.3	+1	reviewed	p.K437N	0.673	114	0%	168	36.9%	0	-	unknown(0)	deleterious(0)	-	NULL
TCN2	6948	genome.wustl.edu	37	22	31011414	31011414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_000355.3	+1	reviewed	p.P236H	0.974	43	0%	54	42.6%	71	40.8%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_Cobalamin_bind
LIMK2	3985	genome.wustl.edu	37	22	31672948	31672948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001031801.1	+1	reviewed	p.E628G	0.997	62	0%	32	18.8%	6	33.3%	benign(0.034)	deleterious(0.02)	neutral(0.385)	HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor
TRIOBP	11078	genome.wustl.edu	37	22	38151582	38151582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001039141.2	+1	reviewed	p.S1868L	1.000	27	0%	18	27.8%	76	10.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SREBF2	6721	genome.wustl.edu	37	22	42262951	42262951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004599.2	+1	reviewed	p.S69G	0.048	83	0%	96	17.7%	35	22.8%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
CELSR1	9620	genome.wustl.edu	37	22	46859781	46859781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014246.1	-1	reviewed	p.V1336M	1.000	16	0%	46	28.3%	21	57.1%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
TBC1D22A	25771	genome.wustl.edu	37	22	47433077	47433077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014346.1	+1	provisional	p.L438M	1.000	9	0.000	23	0.217	32	12.5%	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
MAP3K15	389840	genome.wustl.edu	37	X	19482522	19482522	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000338883	-1	known	p.A176	0.997	93	0%	166	13.3%	0	-	-	-	-	NULL
CNKSR2	22866	genome.wustl.edu	37	X	21550031	21550031	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014927.3	+1	reviewed	p.P383	0.996	144	0%	190	19.5%	0	-	-	-	-	HMMPfam_DUF1170
PTCHD1	139411	genome.wustl.edu	37	X	23412108	23412108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_173495.2	+1	validated	p.R825G	1.000	187	0%	268	31.3%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
KLHL15	80311	genome.wustl.edu	37	X	24006124	24006124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_030624.2	-1	reviewed	p.R577W	0.988	123	0%	195	33.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Kelch_1,HMMSmart_Kelch
BCOR	54880	genome.wustl.edu	37	X	39921444	39921444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001123385.1	-1	reviewed	p.N1459S	1.000	83	0%	96	32.3%	12	75%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Ankyrin repeat
RGN	9104	genome.wustl.edu	37	X	46949214	46949214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_004683.4	+1	reviewed	p.R129Q	1.000	73	0%	77	37.7%	0	-	probably_damaging(0.964)	tolerated(0.3)	neutral(0.435)	HMMPfam_SGL,superfamily_Calcium-dependent phosphotriesterase
USP27X	389856	genome.wustl.edu	37	X	49644931	49644931	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_001145073.1	+1	provisional	p.Y7	1.000	41	0%	16	62.5%	3	100%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53627121	53627121	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	ENST00000427052	-1	known	p.S74G	0.999	252	0%	584	19.7%	15	46.6%	-	-	-	NULL
APEX2	27301	genome.wustl.edu	37	X	55033780	55033780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_014481.2	+1	reviewed	p.R490H	1.000	15	0%	19	42.1%	32	93.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-GRF
HEPH	9843	genome.wustl.edu	37	X	65428014	65428014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_138737.3	+1	reviewed	p.A833V	1.000	189	0%	359	15.6%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxins
LOC100288033	100288033	genome.wustl.edu	37	X	70887941	70887941	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	XM_002343818.1	+1	model	p.A96	0.000	61	0%	53	37.7%	0	-	-	-	-	NULL
SLC16A2	6567	genome.wustl.edu	37	X	73751373	73751373	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_006517.3	+1	reviewed	p.P609	0.990	241	0%	247	25.5%	4	0%	-	-	-	NULL
NXT2	55916	genome.wustl.edu	37	X	108779158	108779158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_018698.3	+1	provisional	p.Y16C	0.000	215	0%	306	10.8%	0	-	benign(0.001)	-	-	NULL
MAGEC2	51438	genome.wustl.edu	37	X	141291755	141291755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_016249.3	-1	reviewed	p.V7I	0.000	239	0%	244	12.7%	0	-	benign(0.053)	tolerated(0.15)	neutral(0.244)	NULL
AFF2	2334	genome.wustl.edu	37	X	148037373	148037373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002025.3	+1	reviewed	p.P600S	0.996	114	0%	80	18.8%	0	-	probably_damaging(0.998)	tolerated(0.57)	deleterious(0.480)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148072845	148072845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M4-01A-11W-A10C-09	TCGA-BG-A0M4-10A-02W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1b449394-0346-42d0-a2c2-ea0d4bc6f817	262e378b-f303-4219-8571-088403ae6b35	NM_002025.3	+1	reviewed	p.D1307N	0.998	97	0%	96	38.5%	0	-	possibly_damaging(0.888)	deleterious(0.02)	deleterious(0.730)	HMMPfam_AF-4
