Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
APOB48R	0	genome.wustl.edu	37	16	28506765	28506765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	16	28506765	28506765	C	T	SNP	APOB48R	NM_018690.2	human	genbank	58_37c	+1	reviewed	missense	c.403	p.H135Y	0.000	NULL	NULL	-	no_errors
ARAF	0	genome.wustl.edu	37	X	47430836	47430836	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	X	47430836	47430836	G	A	SNP	ARAF	NM_001654.3	human	genbank	58_37c	+1	reviewed	missense	c.1801	p.A601T	0.983	NULL	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_RBD,HMMSmart_RBD,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF54236,superfamily_SSF57889	-	no_errors
ASAP2	0	genome.wustl.edu	37	2	9528605	9528605	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	2	9528605	9528605	A	C	SNP	ASAP2	NM_003887.2	human	genbank	58_37c	+1	reviewed	silent	c.2313	p.P771	0.000	NULL	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_PH domain-like	-	no_errors
BAT4	0	genome.wustl.edu	37	6	31631634	31631634	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	6	31631634	31631634	T	A	SNP	BAT4	NM_033177.2	human	genbank	58_37c	-1	reviewed	missense	c.622	p.N208Y	0.983	superfamily_Ankyrin repeat	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_Ank,superfamily_Ankyrin repeat	-	no_errors
BCL3	0	genome.wustl.edu	37	19	45260669	45260680	+	Frame_Shift_Del	DEL	AGTGGTGAGCGT	AGTGGTGAGCGT	-	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	AGTGGTGAGCGT	AGTGGTGAGCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	19	45260669	45260680	AGTGGTGAGCGT	-	DEL	BCL3	NM_005178.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.810_813	p.V271fs	0.472:0.979:1.000:1.000	HMMPfam_Ank,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
BTNL8	0	genome.wustl.edu	37	5	180377494	180377494	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	5	180377494	180377494	G	A	SNP	BTNL8	NM_001040462.2	human	genbank	58_37c	+1	validated	missense	c.1453	p.E485K	0.001	NULL	HMMSmart_SM00409,HMMPfam_SPRY,HMMSmart_SM00589,HMMPfam_V-set,HMMSmart_SM00449,superfamily_Immunoglobulin	-	no_errors
C1orf222	0	genome.wustl.edu	37	1	1854530	1854530	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	1	1854530	1854530	A	G	SNP	C1orf222	ENST00000493964	human	ensembl	58_37c	-1	known	missense	c.2396	p.L799P	1.000	NULL	NULL	-	no_start_codon
CENPBD1	0	genome.wustl.edu	37	16	90038321	90038321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	16	90038321	90038321	C	T	SNP	CENPBD1	NM_145039.2	human	genbank	58_37c	-1	validated	missense	c.10	p.E4K	0.005	NULL	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind	-	no_errors
CNOT1	0	genome.wustl.edu	37	16	58589747	58589747	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	16	58589747	58589747	T	A	SNP	CNOT1	NM_016284.3	human	genbank	58_37c	-1	validated	missense	c.2545	p.N849Y	1.000	NULL	HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
COL9A3	0	genome.wustl.edu	37	20	61467665	61467665	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	20	61467665	61467665	A	T	SNP	COL9A3	NM_001853.3	human	genbank	58_37c	+1	reviewed	missense	c.1528	p.T510S	0.995	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
DEPDC5	0	genome.wustl.edu	37	22	32188070	32188070	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	22	32188070	32188070	T	A	SNP	DEPDC5	NM_014662.2	human	genbank	58_37c	+1	validated	missense	c.676	p.Y226N	1.000	NULL	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	1144	1144	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	MT	1144	1144	T	C	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000231520	0	genome.wustl.edu	37	10	42380235	42380235	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	10	42380235	42380235	A	T	SNP	ENSG00000231520	ENST00000429113	human	ensembl	58_37c	-1	known	missense	c.27	p.N9K	0.000	NULL	NULL	-	no_stop_codon
FAM86B1	0	genome.wustl.edu	37	8	12041077	12041077	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	8	12041077	12041077	C	T	SNP	FAM86B1	NR_003494.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.007	-	-	-	no_errors
GREB1L	0	genome.wustl.edu	37	18	18983893	18983893	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	18	18983893	18983893	C	T	SNP	GREB1L	NM_001142966.1	human	genbank	58_37c	+1	provisional	missense	c.770	p.S257L	1.000	NULL	PatternScan_ASP_PROTEASE	-	no_errors
ILF2	0	genome.wustl.edu	37	1	153635506	153635506	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	1	153635506	153635506	G	T	SNP	ILF2	NM_004515.2	human	genbank	58_37c	-1	reviewed	missense	c.910	p.L304I	1.000	HMMPfam_DZF,HMMSmart_SM00572	HMMPfam_DZF,HMMSmart_SM00572,superfamily_Nucleotidyltransferase	-	no_errors
KCNK18	0	genome.wustl.edu	37	10	118957011	118957011	+	Silent	SNP	G	G	A	rs139459241	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	10	118957011	118957011	G	A	SNP	KCNK18	NM_181840.1	human	genbank	58_37c	+1	provisional	silent	c.12	p.S4	0.000	NULL	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
LOC100130599	0	genome.wustl.edu	37	21	46122299	46122300	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	21	46122299	46122300	-	T	INS	LOC100130599	XM_002343756.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.555_556	p.P185fs	0.668:0.665	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC645453	0	genome.wustl.edu	37	15	50087833	50087834	+	RNA	INS	-	-	AGTCCT	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	15	50087833	50087834	-	AGTCCT	INS	LOC645453	XR_017437.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000:0.002	-	-	-	pseudogene
LOC646347	0	genome.wustl.edu	37	1	160865116	160865116	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	1	160865116	160865116	G	A	SNP	LOC646347	XR_017680.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
LRP1B	0	genome.wustl.edu	37	2	141806577	141806577	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	2	141806577	141806577	C	T	SNP	LRP1B	NM_018557.2	human	genbank	58_37c	-1	validated	silent	c.1767	p.E589	0.009	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
LRRC16B	0	genome.wustl.edu	37	14	24538005	24538005	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	14	24538005	24538005	C	G	SNP	LRRC16B	NM_138360.3	human	genbank	58_37c	+1	validated	missense	c.3812	p.P1271R	0.390	NULL	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56178169	56178169	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	5	56178169	56178169	C	T	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	nonsense	c.3142	p.Q1048*	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100637074	100637074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	7	100637074	100637074	G	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.3659	p.R1220H	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
PEG3	0	genome.wustl.edu	37	19	57327932	57327932	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	19	57327932	57327932	C	T	SNP	PEG3	NM_006210.2	human	genbank	58_37c	-1	reviewed	missense	c.1878	p.M626I	0.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PKD1	0	genome.wustl.edu	37	16	2165395	2165395	+	Missense_Mutation	SNP	G	G	A	rs138575342	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	16	2165395	2165395	G	A	SNP	PKD1	NM_001009944.2	human	genbank	58_37c	-1	reviewed	missense	c.2081	p.P694L	0.945	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_LRR_1,HMMPfam_REJ,HMMPfam_WSC,HMMSmart_SM00369,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,HMMSmart_SM00321,superfamily_C-type lectin-like,superfamily_L domain-like	-	no_errors
PLXNB3	0	genome.wustl.edu	37	X	153032741	153032741	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	X	153032741	153032741	C	T	SNP	PLXNB3	NM_005393.2	human	genbank	58_37c	+1	reviewed	silent	c.459	p.Y153	0.624	HMMSmart_Sema,superfamily_Sema	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold	-	no_errors
PRAMEF4	0	genome.wustl.edu	37	1	12942944	12942944	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	1	12942944	12942944	A	T	SNP	PRAMEF4	NM_001009611.2	human	genbank	58_37c	-1	validated	missense	c.272	p.L91H	0.024	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRPF19	0	genome.wustl.edu	37	11	60668993	60668993	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	11	60668993	60668993	A	C	SNP	PRPF19	NM_014502.4	human	genbank	58_37c	-1	validated	missense	c.545	p.V182G	1.000	NULL	HMMSmart_WD40,HMMPfam_U-box,HMMSmart_Ubox,superfamily_WD40_like,HMMPfam_Prp19,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_SSF57850	-	no_errors
PTGS1	0	genome.wustl.edu	37	9	125154645	125154645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	9	125154645	125154645	C	T	SNP	PTGS1	NM_000962.2	human	genbank	58_37c	+1	reviewed	missense	c.1622	p.P541L	1.000	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_An_peroxidase,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,superfamily_EGF/Laminin	-	no_errors
RASGRF2	0	genome.wustl.edu	37	5	80381624	80381624	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	5	80381624	80381624	C	T	SNP	RASGRF2	NM_006909.1	human	genbank	58_37c	+1	validated	missense	c.1165	p.P389S	1.000	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	HMMPfam_IQ,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_PH domain-like	-	no_errors
RNF212	0	genome.wustl.edu	37	4	1107207	1107207	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	4	1107207	1107207	T	G	SNP	RNF212	NM_001131034.1	human	genbank	58_37c	-1	validated	silent	c.46	p.R16	0.000	NULL	PatternScan_ZF_RING_1	-	no_errors
SLC2A4	0	genome.wustl.edu	37	17	7187613	7187613	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	17	7187613	7187613	C	T	SNP	SLC2A4	NM_001042.2	human	genbank	58_37c	+1	reviewed	silent	c.642	p.L214	0.986	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS_gen_substrate_transporter	-	no_errors
ST7OT1	0	genome.wustl.edu	37	7	116593832	116593832	+	RNA	SNP	C	C	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	7	116593832	116593832	C	A	SNP	ST7OT1	NR_002330.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	no_errors
TG	0	genome.wustl.edu	37	8	133984055	133984055	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	8	133984055	133984055	C	T	SNP	TG	NM_003235.4	human	genbank	58_37c	+1	reviewed	nonsense	c.5992	p.R1998*	0.182	NULL	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like	-	no_errors
TMED2	0	genome.wustl.edu	37	12	124081212	124081212	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	12	124081212	124081212	T	A	SNP	TMED2	NM_006815.3	human	genbank	58_37c	+1	validated	missense	c.542	p.V181D	1.000	HMMPfam_EMP24_GP25L	HMMPfam_EMP24_GP25L,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
ZGPAT	0	genome.wustl.edu	37	20	62366833	62366833	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	20	62366833	62366833	G	T	SNP	ZGPAT	NM_032527.3	human	genbank	58_37c	+1	validated	silent	c.1374	p.R458	0.944	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors
ZNF462	0	genome.wustl.edu	37	9	109771899	109771899	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F5-01A-12D-A13L-09	TCGA-BH-A1F5-11A-43D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	82121518-98d6-4db6-8be4-74bbe232a9ed	7165c7b4-d552-496f-a2cd-5afe7c99bbea	9	109771899	109771899	G	A	SNP	ZNF462	NM_021224.4	human	genbank	58_37c	+1	validated	silent	c.7263	p.R2421	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
