Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC8	0	genome.wustl.edu	37	11	17470166	17470166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	17470166	17470166	C	T	SNP	ABCC8	NM_000352.3	human	genbank	58_37c	-1	reviewed	missense	c.1229	p.G410E	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABR	0	genome.wustl.edu	37	17	1012303	1012303	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	1012303	1012303	C	T	SNP	ABR	NM_001092.3	human	genbank	58_37c	-1	reviewed	silent	c.6	p.E2	0.987	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,PatternScan_DH_1,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,superfamily_C2_CaLB,superfamily_SSF50729	-	no_errors
ADCY7	0	genome.wustl.edu	37	16	50326656	50326656	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	50326656	50326656	G	C	SNP	ADCY7	NM_001114.3	human	genbank	58_37c	+1	reviewed	missense	c.607	p.D203H	1.000	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ADNP2	0	genome.wustl.edu	37	18	77895655	77895655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	18	77895655	77895655	G	A	SNP	ADNP2	NM_014913.3	human	genbank	58_37c	+1	validated	missense	c.2359	p.E787K	0.996	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	HMMSmart_SM00389,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ADRA2B	0	genome.wustl.edu	37	2	96781346	96781346	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	96781346	96781346	G	C	SNP	ADRA2B	ENST00000409345	human	ensembl	58_37c	-1	known	missense	c.543	p.F181L	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
AFF1	0	genome.wustl.edu	37	4	88035829	88035840	+	In_Frame_Del	DEL	CTGTCAAGGCCT	CTGTCAAGGCCT	-	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	CTGTCAAGGCCT	CTGTCAAGGCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	88035829	88035840	CTGTCAAGGCCT	-	DEL	AFF1	NM_005935.2	human	genbank	58_37c	+1	validated	in_frame_del	c.1823_1834	p.VKAS609in_frame_del	0.072:0.000:0.000:0.000:0.673:1.000:1.000:0.995:0.981:0.897:0.004:0.002	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ANGPTL2	0	genome.wustl.edu	37	9	129851266	129851266	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	129851266	129851266	G	C	SNP	ANGPTL2	NM_012098.2	human	genbank	58_37c	-1	reviewed	silent	c.1434	p.L478	1.000	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C	HMMPfam_Fibrinogen_C,HMMSmart_FBG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C	-	no_errors
ANKAR	0	genome.wustl.edu	37	2	190593522	190593522	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	190593522	190593522	C	T	SNP	ANKAR	NM_144708.3	human	genbank	58_37c	+1	validated	silent	c.2955	p.I985	1.000	HMMSmart_SM00185,superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_ARM repeat	-	no_errors
AOC2	0	genome.wustl.edu	37	17	40997999	40997999	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	40997999	40997999	A	T	SNP	AOC2	NM_009590.2	human	genbank	58_37c	+1	reviewed	silent	c.1356	p.S452	0.064	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain	PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region	-	no_errors
AP1M2	0	genome.wustl.edu	37	19	10691955	10691955	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	10691955	10691955	G	A	SNP	AP1M2	NM_005498.4	human	genbank	58_37c	-1	reviewed	silent	c.660	p.F220	0.899	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
AP2B1	0	genome.wustl.edu	37	17	34044241	34044241	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	34044241	34044241	A	G	SNP	AP2B1	NM_001030006.1	human	genbank	58_37c	+1	reviewed	missense	c.2654	p.N885S	1.000	superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C	HMMSmart_SM00185,HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Subdomain of clathrin and coatomer appendage domain,superfamily_Clathrin adaptor appendage domain,HMMPfam_B2-adapt-app_C,superfamily_ARM repeat	-	no_errors
ARHGAP29	0	genome.wustl.edu	37	1	94668277	94668277	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	94668277	94668277	C	G	SNP	ARHGAP29	NM_004815.3	human	genbank	58_37c	-1	validated	missense	c.966	p.E322D	0.983	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_GTPase activation domain GAP,superfamily_Cysteine-rich domain	-	no_errors
ARHGEF11	0	genome.wustl.edu	37	1	156915948	156915948	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	156915948	156915948	C	T	SNP	ARHGEF11	NM_198236.1	human	genbank	58_37c	-1	reviewed	missense	c.2701	p.E901K	1.000	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729	-	no_errors
ARMC9	0	genome.wustl.edu	37	2	232079614	232079614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	232079614	232079614	C	T	SNP	ARMC9	NM_025139.3	human	genbank	58_37c	+1	validated	missense	c.248	p.S83L	0.965	NULL	HMMSmart_LisH,superfamily_ARM-type_fold	-	no_errors
ATP8B2	0	genome.wustl.edu	37	1	154303324	154303324	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	154303324	154303324	C	G	SNP	ATP8B2	NM_020452.3	human	genbank	58_37c	+1	reviewed	missense	c.223	p.L75V	1.000	superfamily_SSF81665	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
BAK1	0	genome.wustl.edu	37	6	33543708	33543708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	33543708	33543708	G	A	SNP	BAK1	ENST00000360661	human	ensembl	58_37c	-1	known	missense	c.74	p.S25L	0.990	superfamily_Bcl-2 inhibitors of programmed cell death	HMMPfam_Bcl-2,HMMSmart_SM00337,PatternScan_BH1,PatternScan_BH3,superfamily_Bcl-2 inhibitors of programmed cell death	-	no_errors
BDP1	0	genome.wustl.edu	37	5	70766232	70766233	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	70766232	70766233	-	T	INS	BDP1	NM_018429.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.930_931	p.L312fs	1.000:1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,PatternScan_DNA_LIGASE_A1	-	no_errors
BRSK2	0	genome.wustl.edu	37	11	1466828	1466828	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	1466828	1466828	C	T	SNP	BRSK2	NM_003957.2	human	genbank	58_37c	+1	validated	silent	c.1005	p.F335	1.000	superfamily_Kinase_like	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
C12orf36	0	genome.wustl.edu	37	12	13526234	13526234	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	13526234	13526234	C	T	SNP	C12orf36	NM_182558.1	human	genbank	58_37c	-1	provisional	silent	c.321	p.L107	0.000	NULL	NULL	-	no_errors
C1QTNF2	0	genome.wustl.edu	37	5	159776691	159776691	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	159776691	159776691	G	A	SNP	C1QTNF2	NM_031908.4	human	genbank	58_37c	-1	validated	silent	c.477	p.N159	0.569	HMMPfam_Collagen	HMMPfam_C1q,HMMSmart_SM00110,HMMPfam_Collagen,superfamily_TNF-like	-	no_errors
C20orf173	0	genome.wustl.edu	37	20	34116299	34116299	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	20	34116299	34116299	G	T	SNP	C20orf173	NM_001145350.1	human	genbank	58_37c	-1	predicted	nonsense	c.563	p.S188*	0.994	NULL	NULL	-	no_errors
C21orf7	0	genome.wustl.edu	37	21	30464781	30464781	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	21	30464781	30464781	A	G	SNP	C21orf7	NM_020152.2	human	genbank	58_37c	+1	provisional	silent	c.249	p.A83	0.719	NULL	NULL	-	no_errors
C7orf42	0	genome.wustl.edu	37	7	66410096	66410096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	7	66410096	66410096	C	T	SNP	C7orf42	NM_017994.4	human	genbank	58_37c	+1	validated	missense	c.293	p.T98I	1.000	NULL	NULL	-	no_errors
CAPN3	0	genome.wustl.edu	37	15	42652049	42652049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	42652049	42652049	G	A	SNP	CAPN3	NM_000070.2	human	genbank	58_37c	+1	reviewed	missense	c.46	p.E16K	0.997	NULL	PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_SM00230,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine proteinases	-	no_errors
CCAR1	0	genome.wustl.edu	37	10	70482304	70482304	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	10	70482304	70482304	C	T	SNP	CCAR1	NM_018237.2	human	genbank	58_37c	+1	validated	nonsense	c.43	p.Q15*	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand,superfamily_SAP domain	-	no_errors
CCDC42	0	genome.wustl.edu	37	17	8638833	8638833	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	8638833	8638833	C	A	SNP	CCDC42	NM_144681.2	human	genbank	58_37c	-1	validated	nonsense	c.589	p.E197*	0.923	NULL	NULL	-	no_errors
CCDC60	0	genome.wustl.edu	37	12	119942952	119942952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	119942952	119942952	C	T	SNP	CCDC60	NM_178499.3	human	genbank	58_37c	+1	validated	missense	c.727	p.R243W	0.821	NULL	NULL	-	no_errors
CCT7	0	genome.wustl.edu	37	2	73471840	73471840	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	73471840	73471840	C	T	SNP	CCT7	NM_006429.3	human	genbank	58_37c	+1	reviewed	silent	c.615	p.L205	0.572	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like	PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like	-	no_errors
CDH12	0	genome.wustl.edu	37	5	21975470	21975470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	21975470	21975470	C	T	SNP	CDH12	NM_004061.3	human	genbank	58_37c	-1	reviewed	missense	c.256	p.E86K	1.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CDKL3	0	genome.wustl.edu	37	5	133695701	133695701	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	133695701	133695701	C	T	SNP	CDKL3	NM_001113575.1	human	genbank	58_37c	-1	reviewed	missense	c.247	p.D83N	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CHAF1A	0	genome.wustl.edu	37	19	4442293	4442293	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	4442293	4442293	G	A	SNP	CHAF1A	NM_005483.2	human	genbank	58_37c	+1	validated	missense	c.2725	p.E909K	1.000	NULL	NULL	-	no_errors
CHRND	0	genome.wustl.edu	37	2	233399028	233399028	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	233399028	233399028	G	A	SNP	CHRND	NM_000751.1	human	genbank	58_37c	+1	reviewed	missense	c.1347	p.M449I	0.995	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
CLMN	0	genome.wustl.edu	37	14	95669924	95669924	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	14	95669924	95669924	C	T	SNP	CLMN	NM_024734.3	human	genbank	58_37c	-1	validated	missense	c.1762	p.E588K	0.004	NULL	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	-	no_errors
CLN3	0	genome.wustl.edu	37	16	28498999	28498999	+	Missense_Mutation	SNP	G	G	A	rs145749864	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	28498999	28498999	G	A	SNP	CLN3	NM_000086.2	human	genbank	58_37c	-1	reviewed	missense	c.358	p.H120Y	1.000	HMMPfam_CLN3,superfamily_MFS general substrate transporter	HMMPfam_CLN3,superfamily_MFS general substrate transporter	-	no_errors
CNOT3	0	genome.wustl.edu	37	19	54659091	54659091	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	54659091	54659091	G	T	SNP	CNOT3	NM_014516.2	human	genbank	58_37c	+1	validated	missense	c.2208	p.K736N	1.000	HMMPfam_NOT2_3_5	HMMPfam_Not3,HMMPfam_NOT2_3_5	-	no_errors
COL1A2	0	genome.wustl.edu	37	7	94053669	94053669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	7	94053669	94053669	C	T	SNP	COL1A2	NM_000089.3	human	genbank	58_37c	+1	reviewed	missense	c.2587	p.P863S	1.000	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_Collagen	-	no_errors
CYB5D2	0	genome.wustl.edu	37	17	4060161	4060161	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	4060161	4060161	G	T	SNP	CYB5D2	NM_144611.3	human	genbank	58_37c	+1	validated	nonsense	c.580	p.G194*	1.000	NULL	HMMPfam_Cyt-b5,superfamily_Cyt_B5,PatternScan_CYTOCHROME_B5_1	-	no_errors
DEPDC5	0	genome.wustl.edu	37	22	32257357	32257357	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	22	32257357	32257357	G	A	SNP	DEPDC5	NM_001136029.1	human	genbank	58_37c	+1	provisional	missense	c.3241	p.G1081R	1.000	NULL	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DIS3	0	genome.wustl.edu	37	13	73351596	73351596	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	73351596	73351596	C	T	SNP	DIS3	NM_014953.3	human	genbank	58_37c	-1	validated	missense	c.616	p.E206K	1.000	NULL	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II,HMMSmart_SM00670,superfamily_PIN domain-like	-	no_errors
DMKN	0	genome.wustl.edu	37	19	36003351	36003351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	36003351	36003351	G	A	SNP	DMKN	NM_033317.3	human	genbank	58_37c	-1	reviewed	missense	c.656	p.S219L	0.006	NULL	NULL	-	no_errors
DOLK	0	genome.wustl.edu	37	9	131709575	131709575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	131709575	131709575	C	T	SNP	DOLK	NM_014908.3	human	genbank	58_37c	-1	reviewed	missense	c.8	p.R3Q	0.983	NULL	NULL	-	no_errors
DYRK2	0	genome.wustl.edu	37	12	68051050	68051050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	68051050	68051050	G	A	SNP	DYRK2	NM_006482.2	human	genbank	58_37c	+1	reviewed	silent	c.363	p.V121	0.056	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
EEF2	0	genome.wustl.edu	37	19	3980544	3980544	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	3980544	3980544	C	T	SNP	EEF2	NM_001961.3	human	genbank	58_37c	-1	reviewed	silent	c.1314	p.K438	1.000	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins	HMMPfam_EFG_C,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D2,HMMPfam_EFG_IV,superfamily_Translation proteins,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EFCAB4B	0	genome.wustl.edu	37	12	3757680	3757680	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	3757680	3757680	C	G	SNP	EFCAB4B	NM_032680.3	human	genbank	58_37c	-1	validated	silent	c.1146	p.L382	0.000	NULL	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
ELMO2	0	genome.wustl.edu	37	20	44999096	44999096	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	20	44999096	44999096	G	A	SNP	ELMO2	NM_133171.3	human	genbank	58_37c	-1	reviewed	silent	c.1870	p.L624	1.000	superfamily_PH domain-like	HMMPfam_ELMO_CED12,superfamily_ARM repeat,superfamily_PH domain-like	-	no_errors
ENSG00000161103	0	genome.wustl.edu	37	22	18843301	18843301	+	Splice_Site	SNP	A	A	C	rs140436	byCluster	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	22	18843301	18843301	A	C	SNP	ENSG00000161103	ENST00000412938	human	ensembl	58_37c	+1	known	splice_site	c.NULL	NULL	0.711	-	-	-	no_coding_region
ENSG00000207422	0	genome.wustl.edu	37	6	151936928	151936928	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	151936928	151936928	G	C	SNP	ENSG00000207422	ENST00000384691	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000221917	0	genome.wustl.edu	37	9	69443051	69443051	+	Silent	SNP	T	C	C	rs58763354	byCluster	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	69443051	69443051	T	C	SNP	ENSG00000221917	ENST00000333394	human	ensembl	58_37c	+1	known	silent	c.630	p.I210	0.001	NULL	NULL	-	no_errors
ENSG00000248368	0	genome.wustl.edu	37	20	47105777	47105780	+	RNA	DEL	AAAT	AAAT	-	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	AAAT	AAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	20	47105777	47105780	AAAT	-	DEL	ENSG00000248368	ENST00000508054	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors
ERBB2	0	genome.wustl.edu	37	17	37883561	37883561	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	37883561	37883561	A	C	SNP	ERBB2	NM_004448.2	human	genbank	58_37c	+1	reviewed	missense	c.3173	p.D1058A	0.799	NULL	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_YLP,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_EF_HAND_1,superfamily_L domain-like	-	no_errors
ERBB3	0	genome.wustl.edu	37	12	56489535	56489535	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	56489535	56489535	G	T	SNP	ERBB3	NM_001982.2	human	genbank	58_37c	+1	reviewed	missense	c.2000	p.R667L	1.000	NULL	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),superfamily_L domain-like	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50746243	50746243	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	50746243	50746243	T	G	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.4372	p.T1458P	0.000	NULL	NULL	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50754707	50754707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	50754707	50754707	C	T	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.415	p.D139N	0.012	NULL	NULL	-	no_errors
FAM193A	0	genome.wustl.edu	37	4	2632760	2632760	+	Missense_Mutation	SNP	C	T	T	rs145959580	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	2632760	2632760	C	T	SNP	FAM193A	NM_003704.3	human	genbank	58_37c	+1	validated	missense	c.29	p.S10L	1.000	NULL	NULL	-	no_errors
FAT1	0	genome.wustl.edu	37	4	187541561	187541561	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	187541561	187541561	G	A	SNP	FAT1	NM_005245.3	human	genbank	58_37c	-1	reviewed	missense	c.6179	p.S2060F	0.915	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FGD4	0	genome.wustl.edu	37	12	32793219	32793219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	32793219	32793219	G	A	SNP	FGD4	NM_139241.2	human	genbank	58_37c	+1	reviewed	missense	c.2053	p.A685T	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,superfamily_PH domain-like	-	no_errors
FGGY	0	genome.wustl.edu	37	1	59787334	59787334	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	59787334	59787334	A	C	SNP	FGGY	NM_001113411.1	human	genbank	58_37c	+1	validated	missense	c.113	p.D38A	0.997	HMMPfam_FGGY_N,superfamily_SSF53067	HMMPfam_FGGY_N,HMMPfam_FGGY_C,superfamily_SSF53067	-	no_errors
FLAD1	0	genome.wustl.edu	37	1	154961309	154961309	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	154961309	154961309	C	G	SNP	FLAD1	NM_025207.4	human	genbank	58_37c	+1	reviewed	nonsense	c.1101	p.Y367*	0.970	superfamily_Adenine nucleotide alpha hydrolases-like	HMMPfam_MoCF_biosynth,superfamily_Molybdenum cofactor biosynthesis proteins,HMMPfam_PAPS_reduct,PatternScan_CARBAMOYLTRANSFERASE,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
FLG	0	genome.wustl.edu	37	1	152279012	152279012	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	152279012	152279012	C	G	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	missense	c.8350	p.D2784H	0.000	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
FOXP1	0	genome.wustl.edu	37	3	71026112	71026112	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	71026112	71026112	G	C	SNP	FOXP1	NM_032682.4	human	genbank	58_37c	-1	reviewed	missense	c.1510	p.R504G	1.000	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
FOXP3	0	genome.wustl.edu	37	X	49113997	49113997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	49113997	49113997	C	T	SNP	FOXP3	NM_014009.3	human	genbank	58_37c	-1	reviewed	missense	c.341	p.R114Q	0.981	NULL	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
G6PC	0	genome.wustl.edu	37	17	41053005	41053005	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	41053005	41053005	G	A	SNP	G6PC	NM_000151.2	human	genbank	58_37c	+1	reviewed	missense	c.112	p.D38N	1.000	superfamily_AcPase_VanPerase	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase	-	no_errors
GDAP1L1	0	genome.wustl.edu	37	20	42885803	42885803	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	20	42885803	42885803	T	G	SNP	GDAP1L1	NM_024034.3	human	genbank	58_37c	+1	reviewed	missense	c.191	p.V64G	1.000	HMMPfam_GST_N,superfamily_Thioredoxin-like	HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_Thioredoxin-like	-	no_errors
GPR12	0	genome.wustl.edu	37	13	27333626	27333626	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	27333626	27333626	C	T	SNP	GPR12	NM_005288.3	human	genbank	58_37c	-1	validated	silent	c.339	p.K113	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GRHL3	0	genome.wustl.edu	37	1	24657969	24657969	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	24657969	24657969	C	G	SNP	GRHL3	NM_021180.2	human	genbank	58_37c	+1	reviewed	missense	c.86	p.S29C	1.000	NULL	HMMPfam_CP2	-	no_errors
HIATL1	0	genome.wustl.edu	37	9	97209196	97209197	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	97209196	97209197	-	T	INS	HIATL1	NM_032558.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.821_822	p.L277fs	1.000:1.000	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
HIP1R	0	genome.wustl.edu	37	12	123333101	123333101	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	123333101	123333101	C	G	SNP	HIP1R	NM_003959.1	human	genbank	58_37c	+1	validated	silent	c.246	p.L82	1.000	superfamily_ENTH_VHS,HMMPfam_ANTH,HMMSmart_ENTH	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,superfamily_ENTH_VHS,HMMPfam_ANTH,HMMSmart_ENTH,superfamily_SSF109885	-	no_errors
HIST1H3B	0	genome.wustl.edu	37	6	26032006	26032006	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	26032006	26032006	C	A	SNP	HIST1H3B	NM_003537.3	human	genbank	58_37c	-1	reviewed	nonsense	c.283	p.E95*	1.000	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HIVEP2	0	genome.wustl.edu	37	6	143094076	143094076	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	143094076	143094076	C	T	SNP	HIVEP2	NM_006734.3	human	genbank	58_37c	-1	provisional	silent	c.1800	p.S600	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
HS3ST4	0	genome.wustl.edu	37	16	26147270	26147270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	26147270	26147270	G	A	SNP	HS3ST4	ENST00000331351	human	ensembl	58_37c	+1	known	missense	c.1072	p.E358K	1.000	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HYDIN	0	genome.wustl.edu	37	16	71098725	71098725	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	71098725	71098725	G	C	SNP	HYDIN	NM_032821.2	human	genbank	58_37c	-1	validated	silent	c.2094	p.L698	0.101	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IL7R	0	genome.wustl.edu	37	5	35857117	35857117	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	35857117	35857117	C	G	SNP	IL7R	NM_002185.2	human	genbank	58_37c	+1	reviewed	missense	c.38	p.S13C	0.998	NULL	PatternScan_HEMATOPO_REC_S_F1,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
INSIG2	0	genome.wustl.edu	37	2	118864687	118864687	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	118864687	118864687	C	G	SNP	INSIG2	NM_016133.2	human	genbank	58_37c	+1	reviewed	silent	c.558	p.L186	0.995	HMMPfam_INSIG	HMMPfam_INSIG	-	no_errors
IQCA1	0	genome.wustl.edu	37	2	237308074	237308074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	237308074	237308074	C	T	SNP	IQCA1	NM_024726.3	human	genbank	58_37c	-1	provisional	missense	c.1192	p.G398R	0.985	NULL	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KCNA4	0	genome.wustl.edu	37	11	30032528	30032528	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	30032528	30032528	G	T	SNP	KCNA4	NM_002233.2	human	genbank	58_37c	-1	reviewed	missense	c.1698	p.F566L	1.000	superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,HMMPfam_K_channel_TID,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA1704	0	genome.wustl.edu	37	13	45563856	45563856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	45563856	45563856	G	A	SNP	KIAA1704	NM_018559.2	human	genbank	58_37c	+1	predicted	missense	c.67	p.E23K	1.000	NULL	NULL	-	no_errors
KIAA2026	0	genome.wustl.edu	37	9	5920984	5920984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	5920984	5920984	G	A	SNP	KIAA2026	NM_001017969.2	human	genbank	58_37c	-1	validated	missense	c.5012	p.S1671F	0.995	NULL	superfamily_Bromodomain	-	no_errors
KIF16B	0	genome.wustl.edu	37	20	16496280	16496280	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	20	16496280	16496280	C	T	SNP	KIF16B	NM_024704.3	human	genbank	58_37c	-1	validated	silent	c.261	p.V87	1.000	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_FHA,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_LECTIN_LEGUME_BETA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIF6	0	genome.wustl.edu	37	6	39507966	39507966	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	39507966	39507966	C	G	SNP	KIF6	NM_145027.4	human	genbank	58_37c	-1	validated	missense	c.1458	p.K486N	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLHL15	0	genome.wustl.edu	37	X	24024511	24024511	+	Silent	SNP	G	G	A	rs138900946	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	24024511	24024511	G	A	SNP	KLHL15	NM_030624.2	human	genbank	58_37c	-1	reviewed	silent	c.300	p.T100	0.303	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LAMA2	0	genome.wustl.edu	37	6	129835646	129835646	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	129835646	129835646	C	T	SNP	LAMA2	NM_000426.3	human	genbank	58_37c	+1	reviewed	silent	c.9117	p.L3039	0.999	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	HMMPfam_Laminin_B,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF56399,superfamily_SSF57196	-	no_errors
LDB2	0	genome.wustl.edu	37	4	16504411	16504411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	16504411	16504411	G	A	SNP	LDB2	NM_001290.3	human	genbank	58_37c	-1	validated	missense	c.977	p.T326M	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors
LOC100128675	0	genome.wustl.edu	37	19	35566174	35566174	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	35566174	35566174	G	T	SNP	LOC100128675	NR_024561.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.006	-	-	-	no_errors
LOC100287541	0	genome.wustl.edu	37	22	18843242	18843242	+	Missense_Mutation	SNP	C	C	G	rs140437	byHapMap	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	22	18843242	18843242	C	G	SNP	LOC100287541	XM_002344189.1	human	genbank	58_37c	+1	model	missense	c.358	p.H120D	0.997	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
LOC100288142	0	genome.wustl.edu	37	1	148343792	148343792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	148343792	148343792	C	A	SNP	LOC100288142	XM_002344444.1	human	genbank	58_37c	-1	model	missense	c.295	p.V99F	0.000	NULL	HMMPfam_DUF1220	-	no_errors
LOC100289153	0	genome.wustl.edu	37	1	150769197	150769197	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	150769197	150769197	A	C	SNP	LOC100289153	XM_002342134.1	human	genbank	58_37c	+1	model	missense	c.130	p.T44P	0.000	NULL	NULL	-	no_errors
LOC388692	0	genome.wustl.edu	37	1	149282920	149282920	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	149282920	149282920	T	C	SNP	LOC388692	NR_027002.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.011	-	-	-	no_errors
LOC442421	0	genome.wustl.edu	37	9	66500592	66500592	+	RNA	SNP	C	C	T	rs28712882	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	66500592	66500592	C	T	SNP	LOC442421	NR_024496.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.325	-	-	-	no_errors
LOC649489	0	genome.wustl.edu	37	2	107557459	107557459	+	RNA	SNP	T	T	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	107557459	107557459	T	A	SNP	LOC649489	XR_037265.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC728853	0	genome.wustl.edu	37	19	38314456	38314456	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	38314456	38314456	G	C	SNP	LOC728853	XR_015396.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.069	-	-	-	no_errors
LPAR6	0	genome.wustl.edu	37	13	48985612	48985612	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	13	48985612	48985612	G	A	SNP	LPAR6	NM_005767.5	human	genbank	58_37c	-1	reviewed	silent	c.948	p.F316	1.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
MORF4L1	0	genome.wustl.edu	37	15	79179664	79179664	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	79179664	79179664	C	G	SNP	MORF4L1	NM_206839.1	human	genbank	58_37c	+1	validated	missense	c.413	p.S138C	0.992	HMMPfam_MRG	HMMPfam_MRG	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9059785	9059785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	9059785	9059785	C	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.27661	p.E9221K	0.001	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1254384	1254384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	1254384	1254384	C	T	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.2216	p.A739V	0.000	superfamily_Serine proterase inhibitors	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MUC7	0	genome.wustl.edu	37	4	71347020	71347020	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	71347020	71347020	G	A	SNP	MUC7	NM_001145006.1	human	genbank	58_37c	+1	reviewed	missense	c.559	p.E187K	0.000	NULL	NULL	-	no_errors
MUM1L1	0	genome.wustl.edu	37	X	105450345	105450345	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	105450345	105450345	C	T	SNP	MUM1L1	ENST00000337685	human	ensembl	58_37c	+1	known	missense	c.920	p.A307V	0.000	NULL	superfamily_SSF63748	-	no_errors
MYO5B	0	genome.wustl.edu	37	18	47364009	47364009	+	Silent	SNP	G	G	A	rs149010847	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	18	47364009	47364009	G	A	SNP	MYO5B	NM_001080467.2	human	genbank	58_37c	-1	reviewed	silent	c.5016	p.G1672	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO5C	0	genome.wustl.edu	37	15	52529738	52529738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	52529738	52529738	C	T	SNP	MYO5C	NM_018728.2	human	genbank	58_37c	-1	validated	missense	c.2809	p.A937T	0.050	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO7A	0	genome.wustl.edu	37	11	76893573	76893573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	76893573	76893573	G	A	SNP	MYO7A	NM_000260.3	human	genbank	58_37c	+1	reviewed	missense	c.3213	p.M1071I	1.000	HMMSmart_SM00139	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_FERM_N,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NEB	0	genome.wustl.edu	37	2	152544005	152544005	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	152544005	152544005	C	G	SNP	NEB	NM_004543.4	human	genbank	58_37c	-1	reviewed	missense	c.2565	p.M855I	1.000	NULL	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
NFIC	0	genome.wustl.edu	37	19	3456562	3456562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	3456562	3456562	G	A	SNP	NFIC	NM_205843.1	human	genbank	58_37c	+1	validated	missense	c.1411	p.D471N	1.000	HMMPfam_CTF_NFI	HMMPfam_CTF_NFI,HMMPfam_MH1,HMMSmart_SM00523,HMMPfam_NfI_DNAbd_pre-N,PatternScan_CTF_NFI_1	-	no_errors
NLRP9	0	genome.wustl.edu	37	19	56243480	56243480	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	56243480	56243480	C	T	SNP	NLRP9	NM_176820.2	human	genbank	58_37c	-1	reviewed	missense	c.1717	p.G573S	0.000	superfamily_RNI-like	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,PatternScan_RIBOSOMAL_S2_1,superfamily_RNI-like	-	no_errors
NR3C1	0	genome.wustl.edu	37	5	142780154	142780154	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	142780154	142780154	A	C	SNP	NR3C1	NM_001024094.1	human	genbank	58_37c	-1	reviewed	missense	c.251	p.L84R	1.000	HMMPfam_GCR	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_GCR,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
NUDT10	0	genome.wustl.edu	37	X	51075962	51075963	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	51075962	51075963	-	A	INS	NUDT10	ENST00000356450	human	ensembl	58_37c	+1	known	frame_shift_ins	c.145_146	p.G49fs	1.000:1.000	HMMPfam_NUDIX,superfamily_Nudix	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228538601	228538601	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	228538601	228538601	C	T	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	nonsense	c.18376	p.Q6126*	1.000	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OR51I1	0	genome.wustl.edu	37	11	5462646	5462646	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	5462646	5462646	G	A	SNP	OR51I1	NM_001005288.2	human	genbank	58_37c	-1	validated	silent	c.99	p.F33	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ORC3L	0	genome.wustl.edu	37	6	88372852	88372852	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	88372852	88372852	A	G	SNP	ORC3L	NM_181837.1	human	genbank	58_37c	+1	reviewed	missense	c.1826	p.Y609C	1.000	NULL	HMMPfam_ORC3_N	-	no_errors
OTUD4	0	genome.wustl.edu	37	4	146067547	146067547	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	146067547	146067547	G	A	SNP	OTUD4	NM_001102653.1	human	genbank	58_37c	-1	reviewed	missense	c.1099	p.H367Y	0.989	NULL	HMMPfam_OTU,superfamily_SSF54001	-	no_errors
PDGFB	0	genome.wustl.edu	37	22	39636860	39636860	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	22	39636860	39636860	G	T	SNP	PDGFB	NM_033016.2	human	genbank	58_37c	-1	reviewed	silent	c.18	p.L6	0.001	NULL	HMMPfam_PDGF,HMMSmart_SM00141,PatternScan_PDGF_1,HMMPfam_PDGF_N,superfamily_Cystine-knot cytokines	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKHD1L1	0	genome.wustl.edu	37	8	110487470	110487470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	8	110487470	110487470	C	T	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	missense	c.8729	p.S2910L	1.000	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
PMFBP1	0	genome.wustl.edu	37	16	72159902	72159902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	72159902	72159902	C	T	SNP	PMFBP1	NM_031293.2	human	genbank	58_37c	-1	validated	missense	c.2218	p.A740T	0.000	NULL	NULL	-	no_errors
POLM	0	genome.wustl.edu	37	7	44118410	44118410	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	7	44118410	44118410	C	A	SNP	POLM	NM_013284.2	human	genbank	58_37c	-1	validated	nonsense	c.643	p.E215*	1.000	HMMSmart_POLXc,superfamily_DNApol_B_N_like	HMMSmart_BRCT,superfamily_BRCT,HMMSmart_POLXc,superfamily_DNApol_B_N_like,HMMPfam_DNA_pol_lambd_f,superfamily_DNA_pol_lambd_fingers_domain,PatternScan_DNA_POLYMERASE_X,superfamily_SSF81301	-	no_errors
PPIL5	0	genome.wustl.edu	37	14	50069163	50069163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	14	50069163	50069163	C	T	SNP	PPIL5	NM_152329.3	human	genbank	58_37c	+1	reviewed	missense	c.259	p.P87S	0.999	superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
PPME1	0	genome.wustl.edu	37	11	73882561	73882561	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	73882561	73882561	G	C	SNP	PPME1	NM_016147.1	human	genbank	58_37c	+1	provisional	missense	c.95	p.R32P	1.000	NULL	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	-	no_errors
PSG1	0	genome.wustl.edu	37	19	43348588	43348588	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	43348588	43348588	C	G	SNP	PSG1	ENST00000449000	human	ensembl	58_37c	-1	known	missense	c.1166	p.R389T	0.009	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89653845	89653845	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	10	89653845	89653845	A	T	SNP	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	missense	c.143	p.N48I	1.000	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
PTPRD	0	genome.wustl.edu	37	9	8465571	8465571	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	8465571	8465571	G	T	SNP	PTPRD	NM_002839.3	human	genbank	58_37c	-1	reviewed	missense	c.3609	p.F1203L	1.000	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
PTRF	0	genome.wustl.edu	37	17	40556818	40556818	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	40556818	40556818	C	G	SNP	PTRF	NM_012232.5	human	genbank	58_37c	-1	reviewed	missense	c.1060	p.E354Q	0.993	NULL	NULL	-	no_errors
RAB7L1	0	genome.wustl.edu	37	1	205739909	205739909	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	205739909	205739909	C	T	SNP	RAB7L1	NM_001135662.1	human	genbank	58_37c	-1	validated	nonsense	c.452	p.W151*	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RASGRF2	0	genome.wustl.edu	37	5	80382663	80382663	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	80382663	80382663	C	T	SNP	RASGRF2	NM_006909.1	human	genbank	58_37c	+1	validated	silent	c.1281	p.H427	0.894	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	HMMPfam_IQ,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_PH domain-like	-	no_errors
RHO	0	genome.wustl.edu	37	3	129251468	129251468	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	129251468	129251468	C	G	SNP	RHO	NM_000539.3	human	genbank	58_37c	+1	reviewed	missense	c.789	p.I263M	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN,HMMPfam_Rhodopsin_N,superfamily_SSF81321	-	no_errors
RNH1	0	genome.wustl.edu	37	11	499131	499131	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	499131	499131	G	C	SNP	RNH1	NM_002939.3	human	genbank	58_37c	-1	validated	silent	c.498	p.L166	0.995	superfamily_SSF52047	HMMPfam_LRR_1,HMMSmart_LRR_RI,superfamily_SSF52047	-	no_errors
RUFY1	0	genome.wustl.edu	37	5	179020635	179020635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	179020635	179020635	C	T	SNP	RUFY1	NM_025158.3	human	genbank	58_37c	+1	validated	missense	c.1402	p.H468Y	1.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_RUN,HMMSmart_SM00593,superfamily_FYVE/PHD zinc finger	-	no_errors
SATB2	0	genome.wustl.edu	37	2	200173524	200173524	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	200173524	200173524	G	A	SNP	SATB2	NM_015265.3	human	genbank	58_37c	-1	reviewed	missense	c.1699	p.R567C	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like	-	no_errors
SCGB1C1	0	genome.wustl.edu	37	11	193718	193718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	193718	193718	C	T	SNP	SCGB1C1	NM_145651.2	human	genbank	58_37c	+1	validated	missense	c.62	p.A21V	0.146	HMMPfam_Uteroglobin	HMMPfam_Uteroglobin,superfamily_Secretoglobin	-	no_errors
SCHIP1	0	genome.wustl.edu	37	3	159605599	159605599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	159605599	159605599	G	A	SNP	SCHIP1	NM_014575.2	human	genbank	58_37c	+1	provisional	missense	c.1099	p.E367K	1.000	HMMPfam_SCHIP-1	HMMPfam_SCHIP-1	-	no_errors
SEC16A	0	genome.wustl.edu	37	9	139357443	139357443	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	139357443	139357443	C	T	SNP	SEC16A	NM_014866.1	human	genbank	58_37c	-1	validated	missense	c.4789	p.E1597K	0.994	NULL	NULL	-	no_errors
SEPP1	0	genome.wustl.edu	37	5	42801110	42801110	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	42801110	42801110	G	C	SNP	SEPP1	NM_001093726.1	human	genbank	58_37c	-1	reviewed	silent	c.948	p.L316	0.936	HMMPfam_SelP_C	HMMPfam_SelP_N,HMMPfam_SelP_C	-	pseudogene
SETDB1	0	genome.wustl.edu	37	1	150931666	150931667	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	150931666	150931667	-	A	INS	SETDB1	NM_001145415.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.2343_2344	p.N781fs	1.000:1.000	HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain	HMMPfam_SET,HMMSmart_SM00317,HMMPfam_MBD,HMMSmart_SM00391,HMMSmart_SM00333,HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_DNA-binding domain,superfamily_SET domain	-	no_errors
SFRS15	0	genome.wustl.edu	37	21	33044075	33044075	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	21	33044075	33044075	G	A	SNP	SFRS15	NM_020706.2	human	genbank	58_37c	-1	reviewed	silent	c.3081	p.N1027	0.003	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00582,HMMPfam_DUF618,superfamily_ENTH/VHS domain,superfamily_RNA-binding domain RBD	-	no_errors
SH3RF1	0	genome.wustl.edu	37	4	170057685	170057685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	170057685	170057685	G	A	SNP	SH3RF1	ENST00000511421	human	ensembl	58_37c	-1	known	missense	c.437	p.P146L	0.998	superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SHROOM2	0	genome.wustl.edu	37	X	9900268	9900268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	X	9900268	9900268	C	T	SNP	SHROOM2	NM_001649.2	human	genbank	58_37c	+1	reviewed	missense	c.2945	p.P982L	0.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SIX1	0	genome.wustl.edu	37	14	61115628	61115628	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	14	61115628	61115628	C	A	SNP	SIX1	NM_005982.3	human	genbank	58_37c	-1	reviewed	nonsense	c.280	p.E94*	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
SLC25A24	0	genome.wustl.edu	37	1	108742651	108742651	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	108742651	108742651	C	G	SNP	SLC25A24	NM_013386.3	human	genbank	58_37c	-1	validated	missense	c.110	p.G37A	1.000	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	superfamily_Mitochondrial carrier,HMMSmart_SM00054,HMMPfam_Mito_carr,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
SLC2A7	0	genome.wustl.edu	37	1	9074847	9074847	+	Missense_Mutation	SNP	C	C	T	rs148489455	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	1	9074847	9074847	C	T	SNP	SLC2A7	NM_207420.2	human	genbank	58_37c	-1	provisional	missense	c.796	p.E266K	0.972	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC35B2	0	genome.wustl.edu	37	6	44222443	44222443	+	Nonstop_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	44222443	44222443	T	C	SNP	SLC35B2	NM_178148.2	human	genbank	58_37c	-1	validated	nonstop	c.1299	p.*433W	0.888	NULL	PatternScan_COPPER_BLUE,HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
SLC6A12	0	genome.wustl.edu	37	12	313734	313734	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	313734	313734	G	A	SNP	SLC6A12	NM_001122847.1	human	genbank	58_37c	-1	validated	silent	c.345	p.F115	0.999	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SPDYE7P	0	genome.wustl.edu	37	7	72334540	72334540	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	7	72334540	72334540	C	T	SNP	SPDYE7P	NR_003666.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.069	-	-	-	pseudogene
SSFA2	0	genome.wustl.edu	37	2	182794293	182794293	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	182794293	182794293	C	A	SNP	SSFA2	NM_006751.5	human	genbank	58_37c	+1	validated	silent	c.3681	p.G1227	0.000	NULL	NULL	-	no_errors
STAB2	0	genome.wustl.edu	37	12	104140458	104140458	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	104140458	104140458	G	T	SNP	STAB2	NM_017564.9	human	genbank	58_37c	+1	reviewed	nonsense	c.6220	p.E2074*	0.926	HMMSmart_EGF,superfamily_Grow_fac_recept	HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_EGF_alliinase,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type_lectin_fold,superfamily_SSF57196	-	no_errors
STX8	0	genome.wustl.edu	37	17	9408460	9408460	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	9408460	9408460	C	G	SNP	STX8	NM_004853.2	human	genbank	58_37c	-1	reviewed	missense	c.343	p.E115Q	0.831	NULL	HMMPfam_SNARE,HMMSmart_SM00397	-	no_errors
TAF1L	0	genome.wustl.edu	37	9	32632676	32632676	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	9	32632676	32632676	C	G	SNP	TAF1L	NM_153809.2	human	genbank	58_37c	-1	provisional	missense	c.2902	p.E968Q	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_TBP-binding,superfamily_TAF_II_230,PatternScan_BROMODOMAIN_1	-	no_errors
TBCEL	0	genome.wustl.edu	37	11	120929104	120929104	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	11	120929104	120929104	G	C	SNP	TBCEL	NM_001130047.1	human	genbank	58_37c	+1	validated	missense	c.763	p.E255Q	1.000	superfamily_SSF52047	PatternScan_UBIQUITIN_1,superfamily_SSF52047,superfamily_SSF54236	-	no_errors
TEPP	0	genome.wustl.edu	37	16	58018668	58018668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	58018668	58018668	C	T	SNP	TEPP	NM_199046.2	human	genbank	58_37c	+1	validated	silent	c.579	p.F193	0.032	NULL	NULL	-	no_errors
TGS1	0	genome.wustl.edu	37	8	56698896	56698896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	8	56698896	56698896	G	A	SNP	TGS1	NM_024831.6	human	genbank	58_37c	+1	validated	missense	c.439	p.E147K	0.880	NULL	HMMPfam_Methyltransf_15,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
TIAL1	0	genome.wustl.edu	37	10	121337005	121337005	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	10	121337005	121337005	A	C	SNP	TIAL1	NM_001033925.1	human	genbank	58_37c	-1	reviewed	missense	c.746	p.M249R	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
TLE3	0	genome.wustl.edu	37	15	70347638	70347638	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	70347638	70347638	C	G	SNP	TLE3	NM_005078.2	human	genbank	58_37c	-1	validated	splice_site	c.1338-1	e15-1	1.000	-	-	-	no_errors
TMC8	0	genome.wustl.edu	37	17	76133392	76133392	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	76133392	76133392	G	A	SNP	TMC8	NM_152468.4	human	genbank	58_37c	+1	reviewed	missense	c.1204	p.D402N	0.880	NULL	HMMPfam_TMC	-	no_errors
TMEM233	0	genome.wustl.edu	37	12	120031720	120031720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	120031720	120031720	G	A	SNP	TMEM233	NM_001136534.1	human	genbank	58_37c	+1	provisional	missense	c.67	p.E23K	0.998	HMMPfam_CD225	HMMPfam_CD225	-	no_errors
TMTC2	0	genome.wustl.edu	37	12	83359365	83359365	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	12	83359365	83359365	C	G	SNP	TMTC2	NM_152588.1	human	genbank	58_37c	+1	provisional	missense	c.1711	p.L571V	1.000	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMPfam_DUF1736,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TNXB	0	genome.wustl.edu	37	6	32065667	32065667	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	6	32065667	32065667	C	T	SNP	TNXB	NM_019105.6	human	genbank	58_37c	-1	reviewed	silent	c.309	p.L103	0.999	NULL	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
TRPM8	0	genome.wustl.edu	37	2	234858761	234858761	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	234858761	234858761	G	C	SNP	TRPM8	NM_024080.4	human	genbank	58_37c	+1	validated	missense	c.1111	p.E371Q	0.994	NULL	HMMPfam_Ion_trans	-	no_errors
TTN	0	genome.wustl.edu	37	2	179426695	179426695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	179426695	179426695	C	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.76454	p.R25485K	0.869	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	0	genome.wustl.edu	37	2	179604271	179604271	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	179604271	179604271	G	A	SNP	TTN	ENST00000342175	human	ensembl	58_37c	-1	known	silent	c.13176	p.D4392	0.024	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UBR3	0	genome.wustl.edu	37	2	170863687	170863687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	170863687	170863687	C	T	SNP	UBR3	NM_172070.3	human	genbank	58_37c	+1	validated	missense	c.4217	p.P1406L	1.000	NULL	HMMPfam_zf-UBR,HMMSmart_SM00396,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
UNC13C	0	genome.wustl.edu	37	15	54586231	54586231	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	15	54586231	54586231	G	C	SNP	UNC13C	NM_001080534.1	human	genbank	58_37c	+1	provisional	missense	c.3957	p.L1319F	1.000	HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889	-	no_errors
VTN	0	genome.wustl.edu	37	17	26697169	26697169	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	17	26697169	26697169	G	T	SNP	VTN	NM_000638.3	human	genbank	58_37c	-1	reviewed	missense	c.56	p.A19D	0.998	NULL	superfamily_Hemopexin,HMMPfam_Somatomedin_B,HMMSmart_SO,PatternScan_SMB_1,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF90188	-	no_errors
WDFY3	0	genome.wustl.edu	37	4	85678260	85678260	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	4	85678260	85678260	C	T	SNP	WDFY3	NM_014991.4	human	genbank	58_37c	-1	reviewed	missense	c.5243	p.R1748Q	1.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,superfamily_FYVE/PHD zinc finger,superfamily_Cyclin-like,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
ZHX2	0	genome.wustl.edu	37	8	123965814	123965814	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	8	123965814	123965814	G	A	SNP	ZHX2	NM_014943.3	human	genbank	58_37c	+1	reviewed	silent	c.2064	p.V688	0.001	HMMSmart_HOX,superfamily_Homeodomain_like	HMMPfam_Homeobox,HMMSmart_HOX,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
ZNF142	0	genome.wustl.edu	37	2	219508614	219508614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	2	219508614	219508614	G	A	SNP	ZNF142	NM_001105537.1	human	genbank	58_37c	-1	validated	silent	c.2625	p.F875	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF469	0	genome.wustl.edu	37	16	88497563	88497563	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	16	88497563	88497563	G	A	SNP	ZNF469	NM_001127464.1	human	genbank	58_37c	+1	reviewed	missense	c.3601	p.E1201K	0.008	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF502	0	genome.wustl.edu	37	3	44763099	44763099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	3	44763099	44763099	G	A	SNP	ZNF502	NM_001134440.1	human	genbank	58_37c	+1	validated	missense	c.790	p.E264K	0.997	superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF829	0	genome.wustl.edu	37	19	37382578	37382578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	19	37382578	37382578	C	T	SNP	ZNF829	NM_001037232.3	human	genbank	58_37c	-1	validated	missense	c.1115	p.R372K	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZSWIM6	0	genome.wustl.edu	37	5	60822199	60822199	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F8-01A-11D-A13L-09	TCGA-BH-A1F8-11B-21D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	030cfc8a-7b43-4d73-8bfa-b68a47749e49	05c094da-381f-4c2d-bec1-aa0259f7793f	5	60822199	60822199	G	C	SNP	ZSWIM6	NM_020928.1	human	genbank	58_37c	+1	provisional	missense	c.1813	p.E605Q	1.000	NULL	HMMPfam_SWIM	-	no_errors
