Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA4	0	genome.wustl.edu	37	1	94520718	94520718	+	Missense_Mutation	SNP	C	C	A	rs61754027	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	94520718	94520718	C	A	SNP	ABCA4	NM_000350.2	human	genbank	58_37c	-1	reviewed	missense	c.2536	p.D846Y	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ACBD4	0	genome.wustl.edu	37	17	43213950	43213950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	17	43213950	43213950	C	T	SNP	ACBD4	NM_001135704.1	human	genbank	58_37c	+1	reviewed	missense	c.172	p.R58W	0.987	HMMPfam_ACBP,superfamily_ACBP	HMMPfam_ACBP,PatternScan_ACB_1,superfamily_ACBP	-	no_errors
ADAM18	0	genome.wustl.edu	37	8	39495190	39495190	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	8	39495190	39495190	C	T	SNP	ADAM18	NM_014237.1	human	genbank	58_37c	+1	reviewed	silent	c.795	p.I265	0.001	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ANKRD30A	0	genome.wustl.edu	37	10	37508553	37508553	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	10	37508553	37508553	G	T	SNP	ANKRD30A	NM_052997.2	human	genbank	58_37c	+1	validated	nonsense	c.3745	p.E1249*	0.024	NULL	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ARSK	0	genome.wustl.edu	37	5	94936385	94936385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	94936385	94936385	G	A	SNP	ARSK	ENST00000504873	human	ensembl	58_37c	+1	known	missense	c.1153	p.G385R	0.001	NULL	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	-	no_errors
ATP2B3	0	genome.wustl.edu	37	X	152807837	152807837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	X	152807837	152807837	G	A	SNP	ATP2B3	NM_001001344.2	human	genbank	58_37c	+1	reviewed	missense	c.721	p.E241K	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
CACNA1A	0	genome.wustl.edu	37	19	13565940	13565940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	19	13565940	13565940	G	T	SNP	CACNA1A	NM_001127222.1	human	genbank	58_37c	-1	reviewed	missense	c.380	p.T127N	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CCAR1	0	genome.wustl.edu	37	10	70507134	70507134	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	10	70507134	70507134	C	T	SNP	CCAR1	NM_018237.2	human	genbank	58_37c	+1	validated	nonsense	c.637	p.Q213*	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand,superfamily_SAP domain	-	no_errors
CD28	0	genome.wustl.edu	37	2	204599579	204599579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	2	204599579	204599579	C	T	SNP	CD28	NM_006139.2	human	genbank	58_37c	+1	validated	missense	c.607	p.R203C	0.265	NULL	HMMSmart_SM00406,superfamily_Immunoglobulin	-	no_errors
CHRNB1	0	genome.wustl.edu	37	17	7350401	7350401	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	17	7350401	7350401	C	T	SNP	CHRNB1	NM_000747.2	human	genbank	58_37c	+1	reviewed	silent	c.393	p.V131	0.941	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
DCAF8L1	0	genome.wustl.edu	37	X	27997704	27997704	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	X	27997704	27997704	G	T	SNP	DCAF8L1	NM_001017930.1	human	genbank	58_37c	-1	reviewed	missense	c.1748	p.T583N	0.963	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
EED	0	genome.wustl.edu	37	11	85966327	85966327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	11	85966327	85966327	G	A	SNP	EED	NM_003797.2	human	genbank	58_37c	+1	reviewed	missense	c.424	p.D142N	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ELAC2	0	genome.wustl.edu	37	17	12897815	12897815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	17	12897815	12897815	C	T	SNP	ELAC2	NM_018127.6	human	genbank	58_37c	-1	reviewed	missense	c.2035	p.D679N	0.972	HMMPfam_Lactamase_B,superfamily_Metallo-hydrolase/oxidoreductase	HMMPfam_Lactamase_B,superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
ENSG00000198888	0	genome.wustl.edu	37	MT	4201	4201	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	MT	4201	4201	G	A	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.895	p.A299T	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	1968	1968	+	RNA	SNP	G	A	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	MT	1968	1968	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000223474	0	genome.wustl.edu	37	4	31116255	31116256	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	4	31116255	31116256	AC	-	DEL	ENSG00000223474	ENST00000441255	human	ensembl	58_37c	+1	known	frame_shift_del	c.165_166	p.T59fs	0.000:0.000	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000229561	0	genome.wustl.edu	37	16	83886469	83886476	+	Frame_Shift_Del	DEL	TGCACACA	TGCACACA	-	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	TGCACACA	TGCACACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	16	83886469	83886476	TGCACACA	-	DEL	ENSG00000229561	ENST00000412414	human	ensembl	58_37c	-1	known	frame_shift_del	c.445_438	p.T149fs	0.000:0.000:0.002:0.002:0.002:0.003:0.003:0.002	PatternScan_VWFC_1	PatternScan_VWFC_1	-	no_stop_codon
EYS	0	genome.wustl.edu	37	6	65767562	65767562	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	6	65767562	65767562	G	T	SNP	EYS	NM_001142800.1	human	genbank	58_37c	-1	reviewed	silent	c.2082	p.A694	0.853	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
F2R	0	genome.wustl.edu	37	5	76028288	76028288	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	76028288	76028288	C	G	SNP	F2R	NM_001992.3	human	genbank	58_37c	+1	reviewed	missense	c.238	p.L80V	0.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
FAM123A	0	genome.wustl.edu	37	13	25743949	25743949	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	13	25743949	25743949	C	T	SNP	FAM123A	NM_152704.2	human	genbank	58_37c	-1	validated	silent	c.1809	p.L603	0.864	NULL	HMMPfam_WTX	-	no_errors
FAT4	0	genome.wustl.edu	37	4	126328230	126328230	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	4	126328230	126328230	A	C	SNP	FAT4	NM_024582.4	human	genbank	58_37c	+1	validated	missense	c.5503	p.N1835H	1.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FEZ2	0	genome.wustl.edu	37	2	36810595	36810595	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	2	36810595	36810595	G	C	SNP	FEZ2	ENST00000429655	human	ensembl	58_37c	-1	known	missense	c.386	p.S129C	0.364	HMMPfam_FEZ	HMMPfam_FEZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FOXP1	0	genome.wustl.edu	37	3	71161786	71161786	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	3	71161786	71161786	T	C	SNP	FOXP1	NM_032682.4	human	genbank	58_37c	-1	reviewed	silent	c.183	p.A61	0.460	NULL	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GLRA3	0	genome.wustl.edu	37	4	175709965	175709965	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	4	175709965	175709965	A	C	SNP	GLRA3	NM_006529.2	human	genbank	58_37c	-1	validated	splice_site	c.199+2	e2+2	1.000	-	-	-	no_errors
HEATR7B2	0	genome.wustl.edu	37	5	41049479	41049479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	41049479	41049479	C	A	SNP	HEATR7B2	NM_173489.4	human	genbank	58_37c	-1	validated	missense	c.1404	p.E468D	0.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
HECW1	0	genome.wustl.edu	37	7	43506115	43506115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	43506115	43506115	C	T	SNP	HECW1	NM_015052.3	human	genbank	58_37c	+1	validated	missense	c.2861	p.A954V	0.996	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
HUWE1	0	genome.wustl.edu	37	X	53588774	53588774	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	X	53588774	53588774	G	A	SNP	HUWE1	NM_031407.4	human	genbank	58_37c	-1	reviewed	missense	c.7450	p.R2484C	1.000	NULL	HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat	-	no_errors
IFNA6	0	genome.wustl.edu	37	9	21350623	21350623	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	21350623	21350623	G	C	SNP	IFNA6	NM_021002.2	human	genbank	58_37c	-1	validated	missense	c.264	p.F88L	0.630	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines	HMMPfam_Interferon,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D,superfamily_4-helical cytokines	-	no_errors
ITIH5L	0	genome.wustl.edu	37	X	54817311	54817311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	X	54817311	54817311	G	A	SNP	ITIH5L	NM_198510.2	human	genbank	58_37c	-1	reviewed	missense	c.575	p.P192L	0.003	NULL	HMMPfam_VWA,HMMSmart_VWA,HMMSmart_VIT,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_SSF53300	-	no_errors
KCNG4	0	genome.wustl.edu	37	16	84270709	84270709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	16	84270709	84270709	G	A	SNP	KCNG4	NM_172347.1	human	genbank	58_37c	-1	reviewed	missense	c.383	p.A128V	0.996	HMMPfam_K_tetra,superfamily_POZ domain	HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KCTD8	0	genome.wustl.edu	37	4	44177076	44177077	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	4	44177076	44177077	-	A	INS	KCTD8	NM_198353.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1153_1152	p.N384fs	0.980:0.743	NULL	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold	-	no_errors
KIF4B	0	genome.wustl.edu	37	5	154395548	154395548	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	154395548	154395548	C	T	SNP	KIF4B	NM_001099293.1	human	genbank	58_37c	+1	provisional	missense	c.2129	p.A710V	1.000	NULL	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KRTAP5-5	0	genome.wustl.edu	37	11	1651157	1651157	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	11	1651157	1651157	A	G	SNP	KRTAP5-5	NM_001001480.2	human	genbank	58_37c	+1	validated	silent	c.87	p.G29	0.409	NULL	PatternScan_2FE2S_FER_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LMO7	0	genome.wustl.edu	37	13	76395433	76395433	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	13	76395433	76395433	T	A	SNP	LMO7	NM_015842.2	human	genbank	58_37c	+1	reviewed	missense	c.1629	p.S543R	0.989	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
LOC100288765	0	genome.wustl.edu	37	9	69845804	69845804	+	Missense_Mutation	SNP	C	C	G	rs75336950	byFrequency	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	69845804	69845804	C	G	SNP	LOC100288765	XM_002342925.1	human	genbank	58_37c	+1	model	missense	c.133	p.L45V	0.857	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100288836	0	genome.wustl.edu	37	1	16257	16257	+	Silent	SNP	G	C	C	rs78588380	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	16257	16257	G	C	SNP	LOC100288836	XM_002343871.1	human	genbank	58_37c	+1	model	silent	c.861	p.G287	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC100289581	0	genome.wustl.edu	37	10	135491080	135491080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	10	135491080	135491080	G	A	SNP	LOC100289581	XM_002343041.1	human	genbank	58_37c	+1	model	missense	c.691	p.G231R	0.959	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	pseudogene
LOC100289668	0	genome.wustl.edu	37	15	102303232	102303232	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	15	102303232	102303232	C	T	SNP	LOC100289668	XM_002343401.1	human	genbank	58_37c	+1	model	missense	c.52	p.R18C	0.994	NULL	NULL	-	no_start_codon:no_stop_codon
LOC728297	0	genome.wustl.edu	37	9	45362640	45362642	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	45362640	45362642	AGA	-	DEL	LOC728297	XM_001127111.2	human	genbank	58_37c	+1	model	in_frame_del	c.614_616	p.K206in_frame_del	1.000:1.000:1.000	HMMPfam_7tm_1	HMMPfam_7tm_1	-	no_errors
MLNR	0	genome.wustl.edu	37	13	49796405	49796405	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	13	49796405	49796405	G	A	SNP	MLNR	NM_001507.1	human	genbank	58_37c	+1	provisional	silent	c.1131	p.P377	0.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MMAB	0	genome.wustl.edu	37	12	109998898	109998898	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	12	109998898	109998898	C	T	SNP	MMAB	NM_052845.3	human	genbank	58_37c	-1	reviewed	silent	c.531	p.K177	1.000	HMMPfam_Cob_adeno_trans,superfamily_Cobalamin adenosyltransferase-like	HMMPfam_Cob_adeno_trans,superfamily_Cobalamin adenosyltransferase-like	-	no_errors
NF1	0	genome.wustl.edu	37	17	29556328	29556328	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	17	29556328	29556328	T	G	SNP	NF1	NM_001042492.2	human	genbank	58_37c	+1	reviewed	missense	c.2695	p.L899V	1.000	NULL	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
NID1	0	genome.wustl.edu	37	1	236143802	236143802	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	236143802	236143802	C	T	SNP	NID1	NM_002508.2	human	genbank	58_37c	-1	reviewed	missense	c.3379	p.D1127N	1.000	HMMSmart_SM00135,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00179,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
NLRP5	0	genome.wustl.edu	37	19	56515226	56515226	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	19	56515226	56515226	C	G	SNP	NLRP5	NM_153447.4	human	genbank	58_37c	+1	reviewed	silent	c.207	p.L69	0.038	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like	HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047,superfamily_SSF52540	-	no_errors
OR13C8	0	genome.wustl.edu	37	9	107332253	107332253	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	107332253	107332253	G	C	SNP	OR13C8	NM_001004483.1	human	genbank	58_37c	+1	provisional	missense	c.805	p.D269H	0.003	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR6K2	0	genome.wustl.edu	37	1	158669983	158669983	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	158669983	158669983	T	C	SNP	OR6K2	NM_001005279.1	human	genbank	58_37c	-1	provisional	missense	c.460	p.T154A	0.012	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHA1	0	genome.wustl.edu	37	5	140167416	140167416	+	Missense_Mutation	SNP	G	G	T	rs3733711	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	5	140167416	140167416	G	T	SNP	PCDHA1	NM_018900.2	human	genbank	58_37c	+1	reviewed	missense	c.1541	p.S514I	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PLXNB2	0	genome.wustl.edu	37	22	50719361	50719361	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	22	50719361	50719361	C	T	SNP	PLXNB2	NM_012401.2	human	genbank	58_37c	-1	validated	missense	c.3805	p.E1269K	1.000	NULL	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold	-	no_errors
PPFIA4	0	genome.wustl.edu	37	1	203023240	203023241	+	Frame_Shift_Ins	INS	-	-	GC	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	1	203023240	203023241	-	GC	INS	PPFIA4	ENST00000447715	human	ensembl	58_37c	+1	known	frame_shift_ins	c.1752_1753	p.P584fs	0.005:0.000	NULL	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2	-	no_errors
RAB38	0	genome.wustl.edu	37	11	87908404	87908404	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	11	87908404	87908404	A	T	SNP	RAB38	NM_022337.1	human	genbank	58_37c	-1	provisional	missense	c.149	p.V50E	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RAB43P1	0	genome.wustl.edu	37	16	46660631	46660631	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	16	46660631	46660631	C	A	SNP	RAB43P1	ENST00000332781	human	ensembl	58_37c	-1	known	silent	c.231	p.S77	0.931	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RPS6KA5	0	genome.wustl.edu	37	14	91356949	91356949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	14	91356949	91356949	G	A	SNP	RPS6KA5	NM_004755.2	human	genbank	58_37c	-1	validated	missense	c.1718	p.P573L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RTL1	0	genome.wustl.edu	37	14	101347322	101347322	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	14	101347322	101347322	T	G	SNP	RTL1	NM_001134888.2	human	genbank	58_37c	-1	reviewed	silent	c.3804	p.P1268	0.000	NULL	HMMPfam_Retrotrans_gag,superfamily_Acid proteases,superfamily_DNA/RNA polymerases	-	no_errors
RYR1	0	genome.wustl.edu	37	19	39075687	39075687	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	19	39075687	39075687	C	T	SNP	RYR1	NM_000540.2	human	genbank	58_37c	+1	reviewed	silent	c.14751	p.F4917	0.982	HMMPfam_Ion_trans	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SEC16A	0	genome.wustl.edu	37	9	139368956	139368956	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	139368956	139368956	C	G	SNP	SEC16A	NM_014866.1	human	genbank	58_37c	-1	validated	missense	c.3112	p.D1038H	0.193	NULL	NULL	-	no_errors
SEC16A	0	genome.wustl.edu	37	9	139369265	139369265	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	139369265	139369265	C	G	SNP	SEC16A	NM_014866.1	human	genbank	58_37c	-1	validated	missense	c.2803	p.E935Q	0.000	NULL	NULL	-	no_errors
SEC16A	0	genome.wustl.edu	37	9	139369436	139369436	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	9	139369436	139369436	C	T	SNP	SEC16A	NM_014866.1	human	genbank	58_37c	-1	validated	missense	c.2632	p.D878N	0.536	NULL	NULL	-	no_errors
SEMA3C	0	genome.wustl.edu	37	7	80418832	80418834	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	80418832	80418834	CTC	-	DEL	SEMA3C	NM_006379.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1144_1142	p.G381in_frame_del	1.000:1.000:1.000	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMSmart_IG,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726	-	no_errors
SEPT14	0	genome.wustl.edu	37	7	55914275	55914275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	55914275	55914275	C	T	SNP	SEPT14	NM_207366.2	human	genbank	58_37c	-1	validated	missense	c.110	p.C37Y	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SLC2A9	0	genome.wustl.edu	37	4	9836533	9836546	+	Frame_Shift_Del	DEL	GCAAAGTTGGAGAG	GCAAAGTTGGAGAG	-	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	GCAAAGTTGGAGAG	GCAAAGTTGGAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	4	9836533	9836546	GCAAAGTTGGAGAG	-	DEL	SLC2A9	NM_020041.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1391_1378	p.L460fs	0.004:0.002:0.003:0.964:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS general substrate transporter	-	no_errors
STAT2	0	genome.wustl.edu	37	12	56737619	56737619	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	12	56737619	56737619	C	A	SNP	STAT2	NM_005419.3	human	genbank	58_37c	-1	reviewed	missense	c.2403	p.E801D	0.000	NULL	HMMPfam_SH2,HMMSmart_SM00252,superfamily_p53-like transcription factors,HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_STAT,superfamily_SH2 domain	-	no_errors
TNIK	0	genome.wustl.edu	37	3	170784390	170784390	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	3	170784390	170784390	T	C	SNP	TNIK	NM_015028.2	human	genbank	58_37c	-1	validated	silent	c.3834	p.Q1278	1.000	HMMPfam_CNH,HMMSmart_SM00036	HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ZNF598	0	genome.wustl.edu	37	16	2048316	2048316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	16	2048316	2048316	C	T	SNP	ZNF598	ENST00000431526	human	ensembl	58_37c	-1	known	missense	c.2632	p.D878N	0.998	HMMSmart_SM00355	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_RING/U-box	-	no_errors
ZNF700	0	genome.wustl.edu	37	19	12060223	12060223	+	Missense_Mutation	SNP	C	C	G	rs147964839	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	19	12060223	12060223	C	G	SNP	ZNF700	NM_144566.1	human	genbank	58_37c	+1	provisional	missense	c.1384	p.R462G	0.008	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF804B	0	genome.wustl.edu	37	7	88956679	88956679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FM-01A-11D-A13L-09	TCGA-BH-A1FM-11B-23D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7cb17736-03da-4f77-8397-145585a25b1e	e50ac0fd-6812-4747-b18d-243a19c00af5	7	88956679	88956679	C	T	SNP	ZNF804B	NM_181646.2	human	genbank	58_37c	+1	provisional	missense	c.271	p.R91W	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
