Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AR	0	genome.wustl.edu	37	X	66766554	66766554	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	66766554	66766554	C	T	SNP	AR	NM_000044.2	human	genbank	58_37c	+1	reviewed	silent	c.1566	p.S522	0.990	NULL	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_Androgen_recep,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ARAP2	0	genome.wustl.edu	37	4	36115810	36115810	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	36115810	36115810	T	C	SNP	ARAP2	NM_015230.2	human	genbank	58_37c	-1	reviewed	missense	c.4138	p.I1380V	1.000	HMMPfam_RA	HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_SAM/Pointed domain,superfamily_PH domain-like	-	no_errors
ARHGAP21	0	genome.wustl.edu	37	10	24896748	24896748	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	24896748	24896748	G	T	SNP	ARHGAP21	NM_020824.3	human	genbank	58_37c	-1	validated	missense	c.2507	p.P836H	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
ARL15	0	genome.wustl.edu	37	5	53182436	53182436	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	5	53182436	53182436	C	T	SNP	ARL15	NM_019087.2	human	genbank	58_37c	-1	validated	silent	c.570	p.L190	0.996	HMMPfam_Arf,superfamily_SSF52540	HMMPfam_Arf,superfamily_SSF52540	-	no_errors
ATP10A	0	genome.wustl.edu	37	15	25953373	25953373	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	15	25953373	25953373	C	G	SNP	ATP10A	NM_024490.3	human	genbank	58_37c	-1	reviewed	missense	c.2419	p.G807R	1.000	superfamily_SSF56784,superfamily_SSF81660	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660	-	no_errors
ATP2B2	0	genome.wustl.edu	37	3	10370571	10370571	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	10370571	10370571	G	A	SNP	ATP2B2	NM_001001331.2	human	genbank	58_37c	-1	reviewed	missense	c.3659	p.T1220M	1.000	NULL	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
C14orf145	0	genome.wustl.edu	37	14	81329162	81329162	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	14	81329162	81329162	T	C	SNP	C14orf145	NM_152446.3	human	genbank	58_37c	-1	validated	missense	c.701	p.E234G	1.000	NULL	NULL	-	no_errors
CDK17	0	genome.wustl.edu	37	12	96688890	96688901	+	Frame_Shift_Del	DEL	TACAGAAACAGC	TACAGAAACAGC	-	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	TACAGAAACAGC	TACAGAAACAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	96688890	96688901	TACAGAAACAGC	-	DEL	CDK17	NM_002595.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.884_874	p.L292fs	1.000:1.000:0.908:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CDK5RAP1	0	genome.wustl.edu	37	20	31984736	31984736	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	20	31984736	31984736	C	A	SNP	CDK5RAP1	NM_016408.2	human	genbank	58_37c	-1	reviewed	missense	c.135	p.E45D	0.128	NULL	HMMPfam_TRAM,PatternScan_UPF0004,HMMSmart_SM00729,HMMPfam_Radical_SAM,HMMPfam_UPF0004,superfamily_Radical SAM enzymes	-	no_errors
CDX2	0	genome.wustl.edu	37	13	28537414	28537414	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	28537414	28537414	C	T	SNP	CDX2	NM_001265.3	human	genbank	58_37c	-1	validated	silent	c.780	p.P260	0.882	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_Caudal_act,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
CEP110	0	genome.wustl.edu	37	9	123935683	123935683	+	Missense_Mutation	SNP	G	G	A	rs139787251	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	123935683	123935683	G	A	SNP	CEP110	NM_007018.4	human	genbank	58_37c	+1	reviewed	missense	c.6580	p.E2194K	0.703	NULL	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
COL9A1	0	genome.wustl.edu	37	6	71004156	71004156	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	6	71004156	71004156	G	C	SNP	COL9A1	NM_001851.4	human	genbank	58_37c	-1	reviewed	missense	c.410	p.S137C	0.169	HMMSmart_TSPN,superfamily_ConA_like_lec_gl	HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl	-	no_errors
CTBP2	0	genome.wustl.edu	37	10	126683158	126683158	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	126683158	126683158	G	A	SNP	CTBP2	NM_022802.2	human	genbank	58_37c	-1	reviewed	silent	c.2280	p.S760	1.000	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_3,superfamily_NAD(P)-bd,superfamily_SSF52283	-	no_errors
DPEP3	0	genome.wustl.edu	37	16	68009816	68009816	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	68009816	68009816	G	T	SNP	DPEP3	NM_022357.3	human	genbank	58_37c	-1	reviewed	missense	c.1394	p.P465H	0.030	superfamily_Metallo-dependent hydrolases	PatternScan_RENAL_DIPEPTIDASE_1,HMMPfam_Peptidase_M19,superfamily_Metallo-dependent hydrolases	-	no_errors
EIF3D	0	genome.wustl.edu	37	22	36907704	36907704	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	36907704	36907704	G	A	SNP	EIF3D	NM_003753.3	human	genbank	58_37c	-1	reviewed	silent	c.1479	p.C493	1.000	HMMPfam_eIF-3_zeta	HMMPfam_eIF-3_zeta	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13412	13412	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	MT	13412	13412	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1076	p.M359T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2085	2085	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	MT	2085	2085	A	G	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	1590	1591	+	RNA	INS	-	-	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	MT	1590	1591	-	T	INS	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000221917	0	genome.wustl.edu	37	9	69441043	69441043	+	Silent	SNP	C	C	T	rs71223554	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	69441043	69441043	C	T	SNP	ENSG00000221917	ENST00000333394	human	ensembl	58_37c	+1	known	silent	c.531	p.T177	0.061	NULL	NULL	-	no_errors
ENSG00000227367	0	genome.wustl.edu	37	22	16909906	16909906	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	16909906	16909906	C	T	SNP	ENSG00000227367	ENST00000421957	human	ensembl	58_37c	-1	known	splice_site	c.NULL	NULL	0.244	-	-	-	no_coding_region:pseudogene
FAM123B	0	genome.wustl.edu	37	X	63410049	63410049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	63410049	63410049	C	T	SNP	FAM123B	NM_152424.3	human	genbank	58_37c	-1	reviewed	missense	c.3118	p.A1040T	0.480	NULL	HMMPfam_WTX	-	no_errors
FASN	0	genome.wustl.edu	37	17	80047261	80047261	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	80047261	80047261	C	A	SNP	FASN	NM_004104.4	human	genbank	58_37c	-1	reviewed	splice_site	c.1966-1	e12-1	1.000	-	-	-	no_errors
FBXL8	0	genome.wustl.edu	37	16	67196943	67196943	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	67196943	67196943	G	A	SNP	FBXL8	NM_018378.2	human	genbank	58_37c	+1	reviewed	silent	c.345	p.P115	0.974	superfamily_SSF52047	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047,superfamily_SSF81383	-	no_errors
GAPVD1	0	genome.wustl.edu	37	9	128064405	128064405	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	128064405	128064405	T	C	SNP	GAPVD1	NM_015635.2	human	genbank	58_37c	+1	validated	missense	c.329	p.I110T	1.000	superfamily_Rho_GAP	HMMPfam_RasGAP,HMMPfam_VPS9,superfamily_Rho_GAP,HMMSmart_VPS9,superfamily_SSF109993	-	no_errors
GLA	0	genome.wustl.edu	37	X	100662776	100662776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	100662776	100662776	G	A	SNP	GLA	NM_000169.2	human	genbank	58_37c	-1	reviewed	missense	c.116	p.T39M	0.956	superfamily_(Trans)glycosidases	HMMPfam_Melibiase,PatternScan_ALPHA_GALACTOSIDASE,superfamily_(Trans)glycosidases,superfamily_Glycosyl hydrolase domain	-	no_errors
GLI2	0	genome.wustl.edu	37	2	121708927	121708927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	121708927	121708927	C	T	SNP	GLI2	NM_005270.4	human	genbank	58_37c	+1	reviewed	silent	c.363	p.Y121	0.996	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
GLI3	0	genome.wustl.edu	37	7	42005234	42005234	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	7	42005234	42005234	A	C	SNP	GLI3	NM_000168.5	human	genbank	58_37c	-1	reviewed	missense	c.3437	p.L1146R	0.975	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
GNL3L	0	genome.wustl.edu	37	X	54567799	54567799	+	Missense_Mutation	SNP	C	C	T	rs139639751	byFrequency	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	54567799	54567799	C	T	SNP	GNL3L	NM_019067.5	human	genbank	58_37c	+1	reviewed	missense	c.283	p.R95C	0.998	NULL	HMMPfam_MMR_HSR1,superfamily_SSF52540	-	no_errors
GPRASP1	0	genome.wustl.edu	37	X	101912271	101912271	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	101912271	101912271	T	G	SNP	GPRASP1	NM_001099410.1	human	genbank	58_37c	+1	reviewed	missense	c.3430	p.C1144G	0.812	HMMPfam_DUF634	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
GRHL3	0	genome.wustl.edu	37	1	24668645	24668645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	24668645	24668645	C	T	SNP	GRHL3	NM_021180.2	human	genbank	58_37c	+1	reviewed	missense	c.1103	p.S368L	1.000	HMMPfam_CP2	HMMPfam_CP2	-	no_errors
HSPG2	0	genome.wustl.edu	37	1	22174305	22174305	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	22174305	22174305	G	A	SNP	HSPG2	NM_005529.5	human	genbank	58_37c	-1	reviewed	nonsense	c.7840	p.R2614*	0.991	NULL	PatternScan_COPPER_BLUE	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGSF1	0	genome.wustl.edu	37	X	130411977	130411977	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	130411977	130411977	G	T	SNP	IGSF1	NM_001555.4	human	genbank	58_37c	-1	reviewed	missense	c.2173	p.Q725K	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
IQCG	0	genome.wustl.edu	37	3	197659062	197659062	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	197659062	197659062	G	A	SNP	IQCG	NM_001134435.1	human	genbank	58_37c	-1	validated	silent	c.627	p.F209	0.999	NULL	HMMPfam_IQ	-	no_errors
IRAK1	0	genome.wustl.edu	37	X	153282465	153282465	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	153282465	153282465	A	T	SNP	IRAK1	ENST00000369973	human	ensembl	58_37c	-1	known	missense	c.926	p.V309E	0.998	NULL	HMMPfam_Death,superfamily_Protein kinase-like (PK-like),superfamily_DEATH domain,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
KCNH1	0	genome.wustl.edu	37	1	210948691	210948691	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	210948691	210948691	C	A	SNP	KCNH1	NM_172362.2	human	genbank	58_37c	-1	reviewed	missense	c.2111	p.R704M	1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KIF12	0	genome.wustl.edu	37	9	116858679	116858679	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	116858679	116858679	G	A	SNP	KIF12	NM_138424.1	human	genbank	58_37c	-1	provisional	silent	c.312	p.I104	0.201	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KLHL36	0	genome.wustl.edu	37	16	84690716	84690716	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	84690716	84690716	G	A	SNP	KLHL36	NM_024731.2	human	genbank	58_37c	+1	provisional	silent	c.303	p.V101	1.000	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LDB1	0	genome.wustl.edu	37	10	103867910	103867910	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	103867910	103867910	G	A	SNP	LDB1	NM_001113407.1	human	genbank	58_37c	-1	validated	silent	c.1176	p.S392	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors
LOC440300	0	genome.wustl.edu	37	15	84860071	84860071	+	RNA	SNP	C	C	T	rs28615558	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	15	84860071	84860071	C	T	SNP	LOC440300	XR_078504.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.975	-	-	-	pseudogene
LOC644456	0	genome.wustl.edu	37	2	58687420	58687420	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	58687420	58687420	G	C	SNP	LOC644456	XR_039438.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.116	-	-	-	pseudogene
LOC644768	0	genome.wustl.edu	37	22	16909896	16909897	+	RNA	DEL	AC	AC	-	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	16909896	16909897	AC	-	DEL	LOC644768	XR_016834.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.976:0.968	-	-	-	pseudogene
MLL2	0	genome.wustl.edu	37	12	49426774	49426774	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	49426774	49426774	T	A	SNP	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	missense	c.11714	p.Q3905L	0.688	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MYH14	0	genome.wustl.edu	37	19	50753006	50753006	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	19	50753006	50753006	C	T	SNP	MYH14	NM_001077186.1	human	genbank	58_37c	+1	reviewed	missense	c.1582	p.R528C	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
N4BP2	0	genome.wustl.edu	37	4	40144366	40144366	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	40144366	40144366	A	T	SNP	N4BP2	NM_018177.3	human	genbank	58_37c	+1	reviewed	missense	c.4859	p.D1620V	1.000	HMMPfam_DUF1771	HMMPfam_Smr,HMMSmart_SM00463,superfamily_UBA-like,HMMPfam_DUF1771,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NADSYN1	0	genome.wustl.edu	37	11	71185527	71185527	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	11	71185527	71185527	C	T	SNP	NADSYN1	NM_018161.4	human	genbank	58_37c	+1	validated	silent	c.753	p.N251	0.994	superfamily_Carbon-nitrogen hydrolase	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase,HMMPfam_NAD_synthase,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
NEFH	0	genome.wustl.edu	37	22	29885829	29885829	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	29885829	29885829	G	A	SNP	NEFH	NM_021076.3	human	genbank	58_37c	+1	reviewed	missense	c.2200	p.E734K	0.848	NULL	HMMPfam_DUF1388,HMMPfam_Filament,PatternScan_IF	-	no_errors
NRCAM	0	genome.wustl.edu	37	7	107820770	107820770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	7	107820770	107820770	C	T	SNP	NRCAM	NM_001037132.1	human	genbank	58_37c	-1	reviewed	silent	c.2748	p.P916	0.002	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
NXPH4	0	genome.wustl.edu	37	12	57619524	57619524	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	57619524	57619524	C	T	SNP	NXPH4	NM_007224.3	human	genbank	58_37c	+1	validated	silent	c.921	p.F307	0.669	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
OR11L1	0	genome.wustl.edu	37	1	248004332	248004332	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004332	248004332	G	C	SNP	OR11L1	NM_001001959.1	human	genbank	58_37c	-1	provisional	missense	c.867	p.I289M	0.999	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR11L1	0	genome.wustl.edu	37	1	248004656	248004656	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004656	248004656	G	A	SNP	OR11L1	NM_001001959.1	human	genbank	58_37c	-1	provisional	silent	c.543	p.L181	0.792	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR11L1	0	genome.wustl.edu	37	1	248004829	248004829	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004829	248004829	G	C	SNP	OR11L1	NM_001001959.1	human	genbank	58_37c	-1	provisional	missense	c.370	p.L124V	0.416	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2L5	0	genome.wustl.edu	37	1	248185954	248185954	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248185954	248185954	G	T	SNP	OR2L5	ENST00000355281	human	ensembl	58_37c	+1	known	missense	c.705	p.K235N	0.967	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OXSM	0	genome.wustl.edu	37	3	25833460	25833460	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	25833460	25833460	C	A	SNP	OXSM	NM_017897.2	human	genbank	58_37c	+1	reviewed	missense	c.949	p.P317T	1.000	HMMPfam_Ketoacyl-synt_C,superfamily_Thiolase-like	HMMPfam_ketoacyl-synt,HMMPfam_Ketoacyl-synt_C,superfamily_Thiolase-like,PatternScan_B_KETOACYL_SYNTHASE	-	no_errors
PALB2	0	genome.wustl.edu	37	16	23614905	23614905	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	23614905	23614905	G	A	SNP	PALB2	NM_024675.3	human	genbank	58_37c	-1	reviewed	nonsense	c.3436	p.Q1146*	0.980	superfamily_WD40_like	superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors
PHYHIP	0	genome.wustl.edu	37	8	22084434	22084434	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	8	22084434	22084434	C	T	SNP	PHYHIP	NM_001099335.1	human	genbank	58_37c	-1	validated	silent	c.270	p.T90	0.764	HMMPfam_fn3,superfamily_Fibronectin type III	HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLOD2	0	genome.wustl.edu	37	3	145791114	145791114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	145791114	145791114	C	T	SNP	PLOD2	NM_182943.2	human	genbank	58_37c	-1	reviewed	missense	c.1703	p.R568H	0.814	NULL	PatternScan_LYS_HYDROXYLASE,HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc	-	no_errors
PNPT1	0	genome.wustl.edu	37	2	55870522	55870522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	55870522	55870522	C	T	SNP	PNPT1	NM_033109.3	human	genbank	58_37c	-1	validated	missense	c.1945	p.V649I	0.541	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	HMMPfam_RNase_PH,HMMSmart_KH,HMMPfam_RNase_PH_C,superfamily_3_ExoRNase,HMMPfam_PNPase,superfamily_Nucleic_acid_OB,HMMPfam_KH_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMSmart_S1,superfamily_SSF54791	-	no_errors
PREX1	0	genome.wustl.edu	37	20	47251303	47251303	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	20	47251303	47251303	C	T	SNP	PREX1	NM_020820.3	human	genbank	58_37c	-1	reviewed	missense	c.4178	p.R1393Q	1.000	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
QPRT	0	genome.wustl.edu	37	16	29706325	29706325	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	29706325	29706325	C	G	SNP	QPRT	NM_014298.3	human	genbank	58_37c	+1	reviewed	silent	c.354	p.A118	0.000	HMMPfam_QRPTase_C,superfamily_Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase NadC) C-terminal domain	HMMPfam_QRPTase_C,HMMPfam_QRPTase_N,superfamily_Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase NadC) C-terminal domain,superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like	-	no_errors
RBM26	0	genome.wustl.edu	37	13	79896574	79896574	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	79896574	79896574	G	A	SNP	RBM26	NM_022118.3	human	genbank	58_37c	-1	validated	silent	c.2763	p.F921	1.000	superfamily_SSF54928	HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMPfam_DUF1777,superfamily_SSF101233,superfamily_SSF54928	-	no_errors
RNF213	0	genome.wustl.edu	37	17	78358925	78358925	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	78358925	78358925	A	G	SNP	RNF213	ENST00000508628	human	ensembl	58_37c	+1	known	silent	c.14409	p.Q4803	0.002	NULL	HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box	-	no_errors
RPL31P11	0	genome.wustl.edu	37	1	161654571	161654572	+	RNA	INS	-	-	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	161654571	161654572	-	T	INS	RPL31P11	NR_002595.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.140:0.150	-	-	-	pseudogene
SILV	0	genome.wustl.edu	37	12	56351845	56351845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	56351845	56351845	C	T	SNP	SILV	NM_006928.3	human	genbank	58_37c	-1	validated	missense	c.493	p.G165S	1.000	NULL	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain	-	no_errors
SLC17A5	0	genome.wustl.edu	37	6	74346398	74346398	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	6	74346398	74346398	G	C	SNP	SLC17A5	NM_012434.4	human	genbank	58_37c	-1	reviewed	missense	c.646	p.L216V	1.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC27A5	0	genome.wustl.edu	37	19	59021339	59021339	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	19	59021339	59021339	C	T	SNP	SLC27A5	NM_012254.2	human	genbank	58_37c	-1	reviewed	missense	c.932	p.R311Q	0.000	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ST6GALNAC6	0	genome.wustl.edu	37	9	130656839	130656839	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	130656839	130656839	G	C	SNP	ST6GALNAC6	NM_013443.3	human	genbank	58_37c	-1	provisional	silent	c.249	p.L83	1.000	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
TFDP1	0	genome.wustl.edu	37	13	114292199	114292199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	114292199	114292199	G	A	SNP	TFDP1	NM_007111.4	human	genbank	58_37c	+1	reviewed	missense	c.1073	p.R358K	1.000	NULL	HMMPfam_E2F_TDP,HMMPfam_DP,superfamily_SSF46785	-	no_errors
TTN	0	genome.wustl.edu	37	2	179436920	179436920	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	179436920	179436920	G	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	nonsense	c.66229	p.R22077*	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
WASH2P	0	genome.wustl.edu	37	2	114355998	114355998	+	RNA	SNP	C	C	G	rs17857355	byFrequency	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	114355998	114355998	C	G	SNP	WASH2P	NR_024077.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
XPO1	0	genome.wustl.edu	37	2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	61719472	61719472	C	T	SNP	XPO1	NM_003400.3	human	genbank	58_37c	-1	reviewed	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	HMMPfam_IBN_N,HMMPfam_Xpo1,HMMPfam_CRM1_C,superfamily_ARM-type_fold	-	no_errors
ZC3H12C	0	genome.wustl.edu	37	11	110030002	110030002	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	11	110030002	110030002	T	A	SNP	ZC3H12C	NM_033390.1	human	genbank	58_37c	+1	validated	nonsense	c.935	p.L312*	0.700	NULL	NULL	-	no_errors
ZFP36L1	0	genome.wustl.edu	37	14	69259611	69259629	+	Frame_Shift_Del	DEL	TTCGCTCAAGTCGAAGATG	TTCGCTCAAGTCGAAGATG	-	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	TTCGCTCAAGTCGAAGATG	TTCGCTCAAGTCGAAGATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	14	69259611	69259629	TTCGCTCAAGTCGAAGATG	-	DEL	ZFP36L1	NM_004926.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.45_27	p.I10fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Tis11B_N	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMPfam_Tis11B_N,superfamily_SSF90229	-	no_errors
ZNF282	0	genome.wustl.edu	37	7	148895716	148895716	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	7	148895716	148895716	G	A	SNP	ZNF282	NM_003575.2	human	genbank	58_37c	+1	validated	missense	c.457	p.V153M	0.997	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
