Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC9	0	genome.wustl.edu	37	12	22063221	22063221	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	22063221	22063221	C	G	SNP	ABCC9	NM_005691.2	human	genbank	58_37c	-1	reviewed	missense	c.1190	p.R397T	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ALMS1	0	genome.wustl.edu	37	2	73659408	73659408	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	2	73659408	73659408	A	C	SNP	ALMS1	NM_015120.4	human	genbank	58_37c	+1	reviewed	missense	c.1421	p.H474P	0.001	NULL	NULL	-	no_errors
AMAC1L1	0	genome.wustl.edu	37	18	11610531	11610531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	18	11610531	11610531	G	A	SNP	AMAC1L1	XM_928960.2	human	genbank	58_37c	+1	model	missense	c.937	p.A313T	0.961	superfamily_SSF103481	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
ARNTL2	0	genome.wustl.edu	37	12	27533206	27533206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	27533206	27533206	G	A	SNP	ARNTL2	NM_020183.3	human	genbank	58_37c	+1	provisional	missense	c.353	p.R118Q	1.000	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
AURKAPS1	0	genome.wustl.edu	37	1	220439846	220439846	+	RNA	SNP	C	C	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	220439846	220439846	C	A	SNP	AURKAPS1	NR_001587.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.001	-	-	-	pseudogene
CASP8	0	genome.wustl.edu	37	2	202134268	202134268	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	2	202134268	202134268	A	C	SNP	CASP8	NM_001228.4	human	genbank	58_37c	+1	reviewed	missense	c.341	p.N114T	0.001	NULL	HMMPfam_DED,HMMSmart_DED,superfamily_DEATH_like,HMMPfam_Peptidase_C14,HMMSmart_CASc,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_SSF52129	-	no_errors
CDH24	0	genome.wustl.edu	37	14	23521744	23521744	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	14	23521744	23521744	G	T	SNP	CDH24	NM_022478.3	human	genbank	58_37c	-1	validated	missense	c.1301	p.A434E	0.018	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DEGS1	0	genome.wustl.edu	37	1	224377282	224377282	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	224377282	224377282	A	G	SNP	DEGS1	NM_003676.2	human	genbank	58_37c	+1	reviewed	missense	c.86	p.K29R	1.000	HMMPfam_Lipid_DES	HMMPfam_FA_desaturase,HMMPfam_Lipid_DES	-	no_errors
DNAJC3	0	genome.wustl.edu	37	13	96412387	96412387	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	13	96412387	96412387	G	A	SNP	DNAJC3	NM_006260.3	human	genbank	58_37c	+1	reviewed	missense	c.640	p.A214T	1.000	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
EBP	0	genome.wustl.edu	37	X	48385405	48385405	+	Silent	SNP	A	A	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	X	48385405	48385405	A	T	SNP	EBP	NM_006579.2	human	genbank	58_37c	+1	reviewed	silent	c.330	p.R110	0.990	HMMPfam_EBP	HMMPfam_EBP	-	no_errors
EFR3A	0	genome.wustl.edu	37	8	132962331	132962331	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	132962331	132962331	G	A	SNP	EFR3A	NM_015137.3	human	genbank	58_37c	+1	validated	missense	c.482	p.R161Q	0.999	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
EIF2C1	0	genome.wustl.edu	37	1	36358211	36358211	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	36358211	36358211	G	A	SNP	EIF2C1	NM_012199.2	human	genbank	58_37c	+1	reviewed	missense	c.263	p.R88H	1.000	superfamily_PAZ domain	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,HMMPfam_DUF1785,superfamily_PAZ domain	-	no_errors
ENSG00000198763	0	genome.wustl.edu	37	MT	4586	4586	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	MT	4586	4586	T	C	SNP	ENSG00000198763	ENST00000361453	human	ensembl	58_37c	+1	known	silent	c.117	p.A39	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198786	0	genome.wustl.edu	37	MT	12889	12889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	MT	12889	12889	G	A	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.553	p.A185T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198888	0	genome.wustl.edu	37	MT	3866	3866	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	MT	3866	3866	T	C	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.560	p.I187T	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000211459	0	genome.wustl.edu	37	MT	1175	1175	+	RNA	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	MT	1175	1175	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ERBB3	0	genome.wustl.edu	37	12	56487649	56487649	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	56487649	56487649	G	T	SNP	ERBB3	NM_001982.2	human	genbank	58_37c	+1	reviewed	missense	c.1582	p.V528F	1.000	HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),superfamily_L domain-like	-	no_errors
FAM135B	0	genome.wustl.edu	37	8	139165210	139165210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	139165210	139165210	G	A	SNP	FAM135B	NM_015912.3	human	genbank	58_37c	-1	validated	missense	c.1508	p.S503L	0.066	NULL	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases	-	no_errors
FOXM1	0	genome.wustl.edu	37	12	2983155	2983155	+	Missense_Mutation	SNP	G	G	A	rs143720765	byFrequency	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	2983155	2983155	G	A	SNP	FOXM1	NM_202002.1	human	genbank	58_37c	-1	validated	missense	c.490	p.R164W	0.001	NULL	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
FUZ	0	genome.wustl.edu	37	19	50315962	50315962	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	19	50315962	50315962	C	T	SNP	FUZ	NM_025129.4	human	genbank	58_37c	-1	validated	missense	c.143	p.G48E	1.000	NULL	NULL	-	no_errors
FXYD3	0	genome.wustl.edu	37	19	35610312	35610312	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	19	35610312	35610312	T	G	SNP	FXYD3	NM_001136007.1	human	genbank	58_37c	+1	reviewed	missense	c.203	p.F68C	0.683	NULL	HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD	-	no_errors
GPRIN1	0	genome.wustl.edu	37	5	176026122	176026134	+	Frame_Shift_Del	DEL	CAAAGACCCAGGA	CAAAGACCCAGGA	-	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	CAAAGACCCAGGA	CAAAGACCCAGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	5	176026122	176026134	CAAAGACCCAGGA	-	DEL	GPRIN1	NM_052899.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.714_702	p.D234fs	0.000:0.000:0.000:0.001:0.004:0.001:0.000:0.000:0.101:0.106:0.114:0.091:0.008	NULL	NULL	-	no_errors
GPRIN1	0	genome.wustl.edu	37	5	176026136	176026146	+	Frame_Shift_Del	DEL	CCTCCTTCCTC	CCTCCTTCCTC	-	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	CCTCCTTCCTC	CCTCCTTCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	5	176026136	176026146	CCTCCTTCCTC	-	DEL	GPRIN1	NM_052899.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.700_690	p.R231fs	0.001:0.001:0.018:0.050:0.065:0.536:0.053:0.031:0.027:0.000:0.000	NULL	NULL	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152189016	152189016	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	152189016	152189016	G	A	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.5089	p.R1697C	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IGHV3-72	0	genome.wustl.edu	37	14	107199193	107199193	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	14	107199193	107199193	C	G	SNP	IGHV3-72	ENST00000433072	human	ensembl	58_37c	-1	known	missense	c.96	p.Q32H	0.705	HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
IQGAP3	0	genome.wustl.edu	37	1	156530742	156530742	+	Silent	SNP	A	A	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	156530742	156530742	A	C	SNP	IQGAP3	NM_178229.4	human	genbank	58_37c	-1	validated	silent	c.1113	p.G371	0.924	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RasGAP_C,HMMPfam_CH,HMMSmart_CH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_Calponin-homology,superfamily_SSF52540	-	no_errors
KCNK18	0	genome.wustl.edu	37	10	118969342	118969342	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	10	118969342	118969342	G	T	SNP	KCNK18	NM_181840.1	human	genbank	58_37c	+1	provisional	missense	c.687	p.E229D	0.401	NULL	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KIAA1429	0	genome.wustl.edu	37	8	95502298	95502298	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	95502298	95502298	C	T	SNP	KIAA1429	NM_015496.3	human	genbank	58_37c	-1	validated	missense	c.5153	p.R1718H	1.000	NULL	NULL	-	no_errors
KIAA1549	0	genome.wustl.edu	37	7	138593769	138593769	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	7	138593769	138593769	G	A	SNP	KIAA1549	NM_020910.2	human	genbank	58_37c	-1	validated	missense	c.3094	p.H1032Y	1.000	NULL	PatternScan_HTH_LUXR_1	-	no_errors
KIAA2026	0	genome.wustl.edu	37	9	5968121	5968121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	9	5968121	5968121	G	A	SNP	KIAA2026	NM_001017969.2	human	genbank	58_37c	-1	validated	missense	c.2110	p.R704C	1.000	NULL	superfamily_Bromodomain	-	no_errors
KRTAP19-4	0	genome.wustl.edu	37	21	31869332	31869332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	21	31869332	31869332	G	A	SNP	KRTAP19-4	NM_181610.1	human	genbank	58_37c	-1	provisional	missense	c.97	p.R33C	0.001	NULL	NULL	-	no_errors
LOC653269	0	genome.wustl.edu	37	2	131258114	131258114	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	2	131258114	131258114	A	G	SNP	LOC653269	XM_928585.2	human	genbank	58_37c	-1	model	silent	c.912	p.Y304	0.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
MAP1A	0	genome.wustl.edu	37	15	43816672	43816672	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	15	43816672	43816672	G	T	SNP	MAP1A	NM_002373.5	human	genbank	58_37c	+1	reviewed	missense	c.3001	p.G1001C	0.999	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAPK8IP1	0	genome.wustl.edu	37	11	45926335	45926335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	11	45926335	45926335	G	A	SNP	MAPK8IP1	NM_005456.2	human	genbank	58_37c	+1	reviewed	missense	c.1843	p.V615M	0.999	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	-	no_errors
OR2T3	0	genome.wustl.edu	37	1	248637381	248637381	+	Missense_Mutation	SNP	G	G	A	rs139789199	byFrequency	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	248637381	248637381	G	A	SNP	OR2T3	NM_001005495.1	human	genbank	58_37c	+1	provisional	missense	c.730	p.A244T	0.005	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR6K3	0	genome.wustl.edu	37	1	158687491	158687491	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	158687491	158687491	G	A	SNP	OR6K3	NM_001005327.2	human	genbank	58_37c	-1	validated	missense	c.463	p.R155W	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
POU4F2	0	genome.wustl.edu	37	4	147561516	147561516	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	4	147561516	147561516	C	T	SNP	POU4F2	NM_004575.2	human	genbank	58_37c	+1	validated	silent	c.786	p.A262	1.000	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1	-	no_errors
PTPRB	0	genome.wustl.edu	37	12	71016202	71016202	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	12	71016202	71016202	T	C	SNP	PTPRB	NM_001109754.1	human	genbank	58_37c	-1	reviewed	missense	c.676	p.T226A	0.404	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Ricin_B_lectin,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Ricin B-like lectins,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RP1	0	genome.wustl.edu	37	8	55537775	55537775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	55537775	55537775	C	T	SNP	RP1	NM_006269.1	human	genbank	58_37c	+1	reviewed	missense	c.1333	p.R445C	0.034	NULL	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837	-	no_errors
RUNX2	0	genome.wustl.edu	37	6	45399750	45399750	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	6	45399750	45399750	G	T	SNP	RUNX2	NM_001024630.3	human	genbank	58_37c	+1	reviewed	nonsense	c.778	p.G260*	1.000	superfamily_P53_like_DNA_bnd,HMMPfam_Runt	superfamily_P53_like_DNA_bnd,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SDK2	0	genome.wustl.edu	37	17	71346499	71346499	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	17	71346499	71346499	G	T	SNP	SDK2	NM_001144952.1	human	genbank	58_37c	-1	provisional	missense	c.5915	p.S1972Y	0.994	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SENP6	0	genome.wustl.edu	37	6	76412369	76412369	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	6	76412369	76412369	G	A	SNP	SENP6	NM_015571.2	human	genbank	58_37c	+1	validated	nonsense	c.2297	p.W766*	1.000	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases	-	no_errors
SH3GLB1	0	genome.wustl.edu	37	1	87207920	87207920	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	1	87207920	87207920	A	G	SNP	SH3GLB1	NM_016009.3	human	genbank	58_37c	+1	validated	missense	c.791	p.N264S	1.000	superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721	-	no_errors
SH3PXD2B	0	genome.wustl.edu	37	5	171766138	171766138	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	5	171766138	171766138	G	A	SNP	SH3PXD2B	NM_001017995.2	human	genbank	58_37c	-1	validated	silent	c.1971	p.G657	0.552	NULL	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PX,HMMSmart_PX,superfamily_PX	-	no_errors
SLC24A3	0	genome.wustl.edu	37	20	19665914	19665915	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	20	19665914	19665915	AG	-	DEL	SLC24A3	NM_020689.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.1233_1234	p.N413fs	0.306:0.999	NULL	HMMPfam_Na_Ca_ex	-	no_errors
SPATA3	0	genome.wustl.edu	37	2	231861059	231861059	+	Silent	SNP	A	A	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	2	231861059	231861059	A	T	SNP	SPATA3	NM_139073.3	human	genbank	58_37c	+1	validated	silent	c.111	p.P37	0.000	NULL	NULL	-	no_errors
STAG3	0	genome.wustl.edu	37	7	99802723	99802723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	7	99802723	99802723	C	T	SNP	STAG3	NM_012447.2	human	genbank	58_37c	+1	validated	missense	c.3047	p.S1016F	1.000	superfamily_ARM repeat	HMMPfam_STAG,superfamily_ARM repeat	-	no_errors
TEX15	0	genome.wustl.edu	37	8	30694937	30694937	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	8	30694937	30694937	G	C	SNP	TEX15	NM_031271.3	human	genbank	58_37c	-1	validated	missense	c.7714	p.Q2572E	0.002	NULL	NULL	-	no_errors
TRANK1	0	genome.wustl.edu	37	3	36900329	36900329	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	3	36900329	36900329	G	T	SNP	TRANK1	ENST00000429976	human	ensembl	58_37c	-1	known	missense	c.1399	p.H467N	0.000	HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon
VPS35	0	genome.wustl.edu	37	16	46694483	46694484	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	16	46694483	46694484	CT	-	DEL	VPS35	NM_018206.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2292_2291	p.E764fs	0.997:1.000	NULL	HMMPfam_Vps35	-	no_errors
VWA3A	0	genome.wustl.edu	37	16	22159506	22159506	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	16	22159506	22159506	G	A	SNP	VWA3A	NM_173615.3	human	genbank	58_37c	+1	validated	missense	c.2863	p.V955I	0.995	superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	-	no_errors
XIRP2	0	genome.wustl.edu	37	2	168108454	168108454	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	2	168108454	168108454	A	T	SNP	XIRP2	NM_152381.4	human	genbank	58_37c	+1	validated	missense	c.10552	p.S3518C	0.043	NULL	HMMPfam_Xin	-	no_errors
ZAN	0	genome.wustl.edu	37	7	100349543	100349543	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	7	100349543	100349543	C	T	SNP	ZAN	NM_003386.1	human	genbank	58_37c	+1	reviewed	silent	c.1815	p.P605	0.000	NULL	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZIC3	0	genome.wustl.edu	37	X	136651211	136651211	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	X	136651211	136651211	G	A	SNP	ZIC3	NM_003413.3	human	genbank	58_37c	+1	reviewed	missense	c.1211	p.R404H	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF248	0	genome.wustl.edu	37	10	38121863	38121863	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A26Z-01A-11D-A16D-09	TCGA-C8-A26Z-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c	16215f35-017a-47a8-a0d4-1536a45430bb	10	38121863	38121863	A	C	SNP	ZNF248	NM_021045.1	human	genbank	58_37c	-1	provisional	missense	c.420	p.C140W	1.000	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
