Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCG1	0	genome.wustl.edu	37	21	43645822	43645822	+	Silent	SNP	G	G	A	rs147934326	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	21	43645822	43645822	G	A	SNP	ABCG1	NM_004915.3	human	genbank	58_37c	+1	reviewed	silent	c.84	p.S28	0.008	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC2_membrane,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADAMTS20	0	genome.wustl.edu	37	12	43833862	43833862	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	43833862	43833862	G	A	SNP	ADAMTS20	NM_025003.3	human	genbank	58_37c	-1	validated	silent	c.2301	p.D767	0.172	HMMPfam_ADAM_spacer1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADARB2	0	genome.wustl.edu	37	10	1279721	1279721	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	10	1279721	1279721	T	C	SNP	ADARB2	NM_018702.2	human	genbank	58_37c	-1	reviewed	silent	c.1428	p.R476	0.529	HMMPfam_A_deamin,HMMSmart_ADEAMc	HMMPfam_dsrm,HMMSmart_DSRM,HMMPfam_A_deamin,HMMSmart_ADEAMc,superfamily_SSF54768	-	no_errors
ADH5	0	genome.wustl.edu	37	4	100003129	100003129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	100003129	100003129	C	T	SNP	ADH5	NM_000671.3	human	genbank	58_37c	-1	reviewed	missense	c.253	p.A85T	0.725	superfamily_GroES-like,HMMPfam_ADH_N	PatternScan_ADH_ZINC,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
ARID5B	0	genome.wustl.edu	37	10	63759999	63759999	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	10	63759999	63759999	A	T	SNP	ARID5B	NM_032199.2	human	genbank	58_37c	+1	validated	missense	c.652	p.R218W	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
ARSK	0	genome.wustl.edu	37	5	94922376	94922391	+	Frame_Shift_Del	DEL	AGAAATTAAGAATATT	AGAAATTAAGAATATT	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	AGAAATTAAGAATATT	AGAAATTAAGAATATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	94922376	94922391	AGAAATTAAGAATATT	-	DEL	ARSK	NM_198150.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.810_825	p.I272fs	1.000:1.000:1.000:1.000:1.000:0.998:0.264:0.245:0.230:0.225:0.375:0.493:0.505:0.997:1.000:1.000	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core	-	no_errors
ATP1A3	0	genome.wustl.edu	37	19	42492241	42492241	+	Silent	SNP	G	G	A	rs148043407	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	42492241	42492241	G	A	SNP	ATP1A3	NM_152296.3	human	genbank	58_37c	-1	reviewed	silent	c.204	p.N68	0.997	HMMPfam_Cation_ATPase_N,superfamily_SSF81665	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
BCL6B	0	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	17	6928019	6928020	-	CAG	INS	BCL6B	NM_181844.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.701_702	p.238in_frame_insS	0.939:0.528	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
C19orf50	0	genome.wustl.edu	37	19	18679394	18679394	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	18679394	18679394	A	T	SNP	C19orf50	NM_024069.3	human	genbank	58_37c	+1	validated	missense	c.484	p.I162F	0.462	NULL	HMMPfam_KxDL	-	no_errors
C7orf63	0	genome.wustl.edu	37	7	89933315	89933315	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	7	89933315	89933315	G	T	SNP	C7orf63	ENST00000389297	human	ensembl	58_37c	+1	known	nonsense	c.2083	p.E695*	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
CACNA1E	0	genome.wustl.edu	37	1	181685255	181685255	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	181685255	181685255	C	A	SNP	CACNA1E	NM_000721.2	human	genbank	58_37c	+1	reviewed	silent	c.1305	p.I435	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CDAN1	0	genome.wustl.edu	37	15	43025328	43025328	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	15	43025328	43025328	C	T	SNP	CDAN1	NM_138477.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1424	p.W475*	1.000	NULL	NULL	-	no_errors
CEP250	0	genome.wustl.edu	37	20	34091216	34091216	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	34091216	34091216	G	T	SNP	CEP250	NM_007186.3	human	genbank	58_37c	+1	reviewed	missense	c.5019	p.Q1673H	0.936	NULL	superfamily_Prefoldin	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31242861	31242861	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	31242861	31242861	A	C	SNP	DDX11	NM_152438.1	human	genbank	58_37c	+1	reviewed	silent	c.922	p.R308	0.001	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DENND4B	0	genome.wustl.edu	37	1	153907279	153907287	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	CTGCTGCTG	CTGCTGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	153907279	153907287	CTGCTGCTG	-	DEL	DENND4B	NM_014856.2	human	genbank	58_37c	-1	validated	in_frame_del	c.2730_2722	p.QQQ908in_frame_del	0.792:0.815:0.846:0.964:0.974:0.990:0.990:0.986:0.989	NULL	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
ELL2	0	genome.wustl.edu	37	5	95242412	95242412	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	95242412	95242412	T	C	SNP	ELL2	NM_012081.5	human	genbank	58_37c	-1	validated	missense	c.556	p.M186V	1.000	HMMPfam_ELL	HMMPfam_Occludin_ELL,HMMPfam_ELL	-	no_errors
ENSG00000099251	0	genome.wustl.edu	37	10	38652501	38652501	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	10	38652501	38652501	A	T	SNP	ENSG00000099251	ENST00000356314	human	ensembl	58_37c	+1	known	missense	c.410	p.E137V	1.000	superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13768	13768	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	MT	13768	13768	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1432	p.F478L	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000219061	0	genome.wustl.edu	37	11	49854989	49854989	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	49854989	49854989	C	T	SNP	ENSG00000219061	ENST00000405176	human	ensembl	58_37c	-1	known	nonsense	c.1065	p.W355*	0.157	HMMPfam_SPRY	PatternScan_SERPIN,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000227833	0	genome.wustl.edu	37	12	621050	621051	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	621050	621051	-	C	INS	ENSG00000227833	ENST00000450859	human	ensembl	58_37c	-1	known	frame_shift_ins	c.520_519	p.K173fs	0.014:0.020	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000240106	0	genome.wustl.edu	37	19	16650620	16650620	+	RNA	SNP	C	G	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	16650620	16650620	C	G	SNP	ENSG00000240106	ENST00000472338	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.010	-	-	-	pseudogene
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
FAM43A	0	genome.wustl.edu	37	3	194408538	194408538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	194408538	194408538	G	A	SNP	FAM43A	NM_153690.4	human	genbank	58_37c	+1	validated	missense	c.983	p.G328D	0.664	NULL	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
FCHO1	0	genome.wustl.edu	37	19	17887068	17887068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	17887068	17887068	C	T	SNP	FCHO1	NM_015122.2	human	genbank	58_37c	+1	validated	missense	c.1195	p.R399C	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SAFF	-	no_errors
FLJ25758	0	genome.wustl.edu	37	19	7005023	7005023	+	RNA	SNP	G	C	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	7005023	7005023	G	C	SNP	FLJ25758	NR_024372.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.002	-	-	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29633945	29633945	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	29633945	29633945	G	A	SNP	FRG1B	NR_003579.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.975	-	-	-	pseudogene
GFPT1	0	genome.wustl.edu	37	2	69569326	69569326	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	2	69569326	69569326	C	G	SNP	GFPT1	NM_002056.2	human	genbank	58_37c	-1	reviewed	missense	c.1107	p.L369F	1.000	HMMPfam_SIS,superfamily_SSF53697	HMMPfam_GATase_2,HMMPfam_SIS,superfamily_SSF53697,superfamily_SSF56235	-	no_errors
HEATR5A	0	genome.wustl.edu	37	14	31792818	31792818	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	14	31792818	31792818	T	A	SNP	HEATR5A	NM_015473.2	human	genbank	58_37c	-1	validated	missense	c.2861	p.H954L	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
HHLA1	0	genome.wustl.edu	37	8	133083697	133083697	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	8	133083697	133083697	A	C	SNP	HHLA1	NM_001145095.1	human	genbank	58_37c	-1	provisional	silent	c.1359	p.A453	0.114	NULL	NULL	-	no_errors
HIVEP3	0	genome.wustl.edu	37	1	42049672	42049672	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	42049672	42049672	T	C	SNP	HIVEP3	NM_024503.3	human	genbank	58_37c	-1	validated	missense	c.797	p.E266G	1.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
HOXD9	0	genome.wustl.edu	37	2	176988290	176988291	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	2	176988290	176988291	-	GCA	INS	HOXD9	NM_014213.3	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.794_795	p.269in_frame_insQ	0.927:0.977	HMMPfam_Hox9_act	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_Hox9_act,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
KCNB2	0	genome.wustl.edu	37	8	73848355	73848355	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	8	73848355	73848355	A	G	SNP	KCNB2	NM_004770.2	human	genbank	58_37c	+1	reviewed	silent	c.765	p.S255	0.921	HMMPfam_Ion_trans,superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Kv2channel,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
KRTAP10-7	0	genome.wustl.edu	37	21	46020656	46020670	+	In_Frame_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	21	46020656	46020670	CTGCTGCGCCCCCAG	-	DEL	KRTAP10-7	ENST00000380102	human	ensembl	58_37c	+1	known	in_frame_del	c.135_149	p.PSCCA49in_frame_del	0.132:0.261:0.989:1.000:1.000:0.990:0.713:0.752:0.994:0.999:1.000:1.000:1.000:0.996:0.995	NULL	HMMPfam_Keratin_B2	-	no_errors
LOC100128682	0	genome.wustl.edu	37	19	35898796	35898797	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	35898796	35898797	-	C	INS	LOC100128682	XM_001719567.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.147_148	p.L49fs	0.325:0.023	NULL	NULL	-	no_errors
LOC100288656	0	genome.wustl.edu	37	5	177434333	177434333	+	RNA	SNP	A	C	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	177434333	177434333	A	C	SNP	LOC100288656	XR_078328.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.064	-	-	-	pseudogene
LOC100294128	0	genome.wustl.edu	37	6	3025846	3025846	+	Silent	SNP	A	G	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	6	3025846	3025846	A	G	SNP	LOC100294128	XM_002343922.1	human	genbank	58_37c	-1	model	silent	c.495	p.N165	0.007	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC100294420	0	genome.wustl.edu	37	11	746361	746361	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	746361	746361	C	G	SNP	LOC100294420	XM_002347185.1	human	genbank	58_37c	+1	model	missense	c.4079	p.P1360R	0.029	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC116437	0	genome.wustl.edu	37	12	131694072	131694072	+	RNA	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	131694072	131694072	G	T	SNP	LOC116437	NR_026670.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC642406	0	genome.wustl.edu	37	9	40582268	40582268	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	9	40582268	40582268	G	T	SNP	LOC642406	XM_002344253.1	human	genbank	58_37c	-1	model	silent	c.373	p.R125	0.788	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
LRIG2	0	genome.wustl.edu	37	1	113616189	113616189	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	113616189	113616189	T	A	SNP	LRIG2	NM_014813.1	human	genbank	58_37c	+1	provisional	missense	c.161	p.L54Q	1.000	NULL	HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726,superfamily_SSF52047	-	no_errors
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MAP6	0	genome.wustl.edu	37	11	75298409	75298409	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	75298409	75298409	C	T	SNP	MAP6	NM_033063.1	human	genbank	58_37c	-1	reviewed	missense	c.2137	p.V713M	0.000	NULL	HMMPfam_STOP	-	no_errors
MASP2	0	genome.wustl.edu	37	1	11097769	11097792	+	In_Frame_Del	DEL	GTCTCGCAAAAGATGGAGAAGCTG	GTCTCGCAAAAGATGGAGAAGCTG	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	GTCTCGCAAAAGATGGAGAAGCTG	GTCTCGCAAAAGATGGAGAAGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	11097769	11097792	GTCTCGCAAAAGATGGAGAAGCTG	-	DEL	MASP2	NM_006610.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.989_966	p.SFSIFCET323in_frame_del	0.000:0.000:0.034:0.149:0.166:0.263:0.864:0.856:0.002:0.001:0.002:0.025:0.042:0.001:0.000:0.004:0.015:0.062:0.109:0.107:0.112:0.116:0.267:0.987	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Trypsin-like serine proteases,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,PatternScan_TRYPSIN_SER,superfamily_EGF/Laminin	-	no_errors
MIR24-1	0	genome.wustl.edu	37	9	97848305	97848305	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	9	97848305	97848305	C	T	SNP	MIR24-1	ENST00000384885	human	ensembl	58_37c	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MTF2	0	genome.wustl.edu	37	1	93602437	93602437	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	93602437	93602437	C	G	SNP	MTF2	NM_007358.3	human	genbank	58_37c	+1	validated	silent	c.1635	p.L545	0.762	NULL	HMMSmart_SM00249,HMMSmart_SM00333,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
MTOR	0	genome.wustl.edu	37	1	11187116	11187116	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	11187116	11187116	C	A	SNP	MTOR	NM_004958.3	human	genbank	58_37c	-1	reviewed	missense	c.6302	p.W2101L	1.000	HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452	-	no_errors
MUC2	0	genome.wustl.edu	37	11	1092800	1092800	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	1092800	1092800	T	G	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.4619	p.I1540S	0.002	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195509886	195509886	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	195509886	195509886	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.8181	p.S2727	0.221	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1265872	1265872	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	1265872	1265872	G	A	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.7771	p.G2591R	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYH8	0	genome.wustl.edu	37	17	10298721	10298721	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	17	10298721	10298721	A	T	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	missense	c.4691	p.I1564N	0.980	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NDUFV1	0	genome.wustl.edu	37	11	67377893	67377893	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	67377893	67377893	G	C	SNP	NDUFV1	NM_007103.3	human	genbank	58_37c	+1	reviewed	missense	c.552	p.K184N	0.974	HMMPfam_Complex1_51K	PatternScan_COMPLEX1_51K_1,PatternScan_COMPLEX1_51K_2,HMMPfam_Complex1_51K,HMMPfam_SLBB,HMMPfam_NADH_4Fe-4S	-	no_errors
NINL	0	genome.wustl.edu	37	20	25481635	25481635	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	25481635	25481635	C	G	SNP	NINL	NM_025176.4	human	genbank	58_37c	-1	validated	missense	c.873	p.E291D	0.989	superfamily_SSF47473	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
NKPD1	0	genome.wustl.edu	37	19	45662102	45662102	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	45662102	45662102	G	A	SNP	NKPD1	ENST00000506988	human	ensembl	58_37c	-1	known	silent	c.348	p.V116	0.069	NULL	HMMPfam_KAP_NTPase	-	no_errors
NOMO2	0	genome.wustl.edu	37	16	18544464	18544464	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	16	18544464	18544464	G	T	SNP	NOMO2	NM_001004060.1	human	genbank	58_37c	-1	reviewed	missense	c.1258	p.P420T	1.000	NULL	HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain,superfamily_Starch-binding domain-like	-	no_errors
NOP2	0	genome.wustl.edu	37	12	6666267	6666267	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	6666267	6666267	G	C	SNP	NOP2	NM_001033714.1	human	genbank	58_37c	-1	validated	silent	c.2319	p.P773	0.000	NULL	HMMPfam_Nol1_Nop2_Fmu,HMMPfam_P120R,PatternScan_NOL1_NOP2_SUN,superfamily_SSF53335	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NUP210	0	genome.wustl.edu	37	3	13364839	13364839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	13364839	13364839	C	T	SNP	NUP210	NM_024923.2	human	genbank	58_37c	-1	reviewed	missense	c.4738	p.A1580T	0.000	NULL	HMMPfam_Big_2,HMMSmart_SM00635,superfamily_Invasin/intimin cell-adhesion fragments	-	no_errors
OTOF	0	genome.wustl.edu	37	2	26739336	26739336	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	2	26739336	26739336	G	A	SNP	OTOF	NM_194248.2	human	genbank	58_37c	-1	reviewed	silent	c.459	p.L153	0.839	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PCDHA9	0	genome.wustl.edu	37	5	140230345	140230345	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	140230345	140230345	G	T	SNP	PCDHA9	NM_031857.1	human	genbank	58_37c	+1	reviewed	missense	c.2265	p.R755S	0.040	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHB11	0	genome.wustl.edu	37	5	140580879	140580879	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	140580879	140580879	G	C	SNP	PCDHB11	NM_018931.2	human	genbank	58_37c	+1	reviewed	missense	c.1532	p.G511A	0.975	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCNXL3	0	genome.wustl.edu	37	11	65384797	65384797	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	65384797	65384797	G	C	SNP	PCNXL3	NM_032223.2	human	genbank	58_37c	+1	validated	missense	c.418	p.V140L	0.992	NULL	HMMPfam_Pecanex_C	-	no_errors
PCSK9	0	genome.wustl.edu	37	1	55505552	55505553	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	55505552	55505553	-	CTG	INS	PCSK9	NM_174936.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.42_43	p.18in_frame_insL	0.042:0.086	NULL	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like,superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9	-	no_errors
PLCL1	0	genome.wustl.edu	37	2	198950898	198950898	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	2	198950898	198950898	T	A	SNP	PLCL1	NM_006226.3	human	genbank	58_37c	+1	validated	missense	c.2363	p.I788N	1.000	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,superfamily_C2_CaLB,HMMPfam_efhand_like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF47473,superfamily_SSF50729	-	no_errors
PLEC	0	genome.wustl.edu	37	8	145006612	145006612	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	8	145006612	145006612	T	C	SNP	PLEC	NM_201380.2	human	genbank	58_37c	-1	reviewed	missense	c.2344	p.S782G	1.000	HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
PRKRIR	0	genome.wustl.edu	37	11	76062798	76062798	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	76062798	76062798	G	A	SNP	PRKRIR	NM_004705.2	human	genbank	58_37c	-1	provisional	nonsense	c.1396	p.R466*	0.988	NULL	HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC	-	no_errors
PSMA7	0	genome.wustl.edu	37	20	60714888	60714888	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	60714888	60714888	C	T	SNP	PSMA7	ENST00000442551	human	ensembl	58_37c	-1	known	missense	c.74	p.R25K	1.000	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PTGIR	0	genome.wustl.edu	37	19	47124648	47124648	+	Silent	SNP	C	C	A	rs138742388	byFrequency	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	47124648	47124648	C	A	SNP	PTGIR	NM_000960.3	human	genbank	58_37c	-1	reviewed	silent	c.1050	p.S350	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
RAD51C	0	genome.wustl.edu	37	17	56801450	56801450	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	17	56801450	56801450	C	A	SNP	RAD51C	NM_058216.1	human	genbank	58_37c	+1	reviewed	missense	c.954	p.D318E	0.980	HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540	HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540	-	no_errors
RBM47	0	genome.wustl.edu	37	4	40434705	40434725	+	In_Frame_Del	DEL	GCGGCTGCGGCGGCTGCGGCC	GCGGCTGCGGCGGCTGCGGCC	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	GCGGCTGCGGCGGCTGCGGCC	GCGGCTGCGGCGGCTGCGGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	40434705	40434725	GCGGCTGCGGCGGCTGCGGCC	-	DEL	RBM47	NM_001098634.1	human	genbank	58_37c	-1	validated	in_frame_del	c.1505_1485	p.AAAAAAA496in_frame_del	0.745:0.762:0.680:0.800:0.820:0.779:0.989:0.994:0.985:0.986:0.953:0.076:0.083:0.087:0.088:0.212:0.300:0.363:0.923:0.912:0.063	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RHOT1	0	genome.wustl.edu	37	17	30536424	30536424	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	17	30536424	30536424	G	C	SNP	RHOT1	NM_001033568.1	human	genbank	58_37c	+1	validated	missense	c.1795	p.E599Q	1.000	NULL	HMMSmart_EFh,HMMPfam_EF_assoc_1,HMMPfam_EF_assoc_2,HMMPfam_Miro,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF52540	-	no_errors
RNU2-2	0	genome.wustl.edu	37	11	62609178	62609178	+	RNA	SNP	A	A	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	11	62609178	62609178	A	G	SNP	RNU2-2	NR_002761.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.932	-	-	-	no_errors
SBNO1	0	genome.wustl.edu	37	12	123798175	123798175	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	12	123798175	123798175	A	T	SNP	SBNO1	NM_018183.3	human	genbank	58_37c	-1	validated	missense	c.3209	p.F1070Y	1.000	NULL	NULL	-	no_errors
SEC24A	0	genome.wustl.edu	37	5	133997101	133997101	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	133997101	133997101	C	A	SNP	SEC24A	NM_021982.1	human	genbank	58_37c	+1	validated	silent	c.390	p.A130	0.004	NULL	HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SLC1A3	0	genome.wustl.edu	37	5	36608580	36608580	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	5	36608580	36608580	C	T	SNP	SLC1A3	NM_004172.4	human	genbank	58_37c	+1	reviewed	nonsense	c.55	p.Q19*	1.000	NULL	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors
SNAPC1	0	genome.wustl.edu	37	14	62235358	62235358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	14	62235358	62235358	C	T	SNP	SNAPC1	NM_003082.3	human	genbank	58_37c	+1	validated	missense	c.434	p.S145L	1.000	HMMPfam_SNAPc_SNAP43	HMMPfam_SNAPc_SNAP43	-	no_errors
SORBS2	0	genome.wustl.edu	37	4	186545132	186545132	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	186545132	186545132	T	C	SNP	SORBS2	NM_021069.4	human	genbank	58_37c	-1	reviewed	missense	c.1439	p.Y480C	0.995	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SOS2	0	genome.wustl.edu	37	14	50605424	50605424	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	14	50605424	50605424	T	C	SNP	SOS2	NM_006939.2	human	genbank	58_37c	-1	validated	missense	c.2864	p.N955S	1.000	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF,PatternScan_RASGEF	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_RasGEF_N,HMMSmart_RasGEFN,PatternScan_DH_1,HMMPfam_PH,HMMSmart_PH,HMMPfam_RasGEF,HMMSmart_RasGEF,HMMPfam_Histone,superfamily_Ras_GEF,superfamily_Histone-fold,PatternScan_RASGEF,superfamily_SSF50729	-	no_errors
SPATA18	0	genome.wustl.edu	37	4	52951104	52951104	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	52951104	52951104	G	T	SNP	SPATA18	NM_145263.2	human	genbank	58_37c	+1	provisional	missense	c.1502	p.S501I	0.611	NULL	NULL	-	no_errors
TAF4	0	genome.wustl.edu	37	20	60581738	60581738	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	20	60581738	60581738	G	A	SNP	TAF4	NM_003185.3	human	genbank	58_37c	-1	reviewed	missense	c.2051	p.P684L	0.494	HMMPfam_TAFH,HMMSmart_TAFH	HMMPfam_TAFH,HMMSmart_TAFH,HMMPfam_TAF4,superfamily_Histone-fold	-	no_errors
TBC1D2	0	genome.wustl.edu	37	9	101006299	101006299	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	9	101006299	101006299	G	C	SNP	TBC1D2	NM_018421.3	human	genbank	58_37c	-1	validated	silent	c.624	p.L208	1.000	NULL	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
UBE4B	0	genome.wustl.edu	37	1	10163139	10163139	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	1	10163139	10163139	A	G	SNP	UBE4B	NM_001105562.1	human	genbank	58_37c	+1	reviewed	missense	c.569	p.N190S	1.000	NULL	HMMPfam_U-box,HMMSmart_SM00504,HMMPfam_Ufd2P_core,superfamily_RING/U-box	-	no_errors
UGT2B11	0	genome.wustl.edu	37	4	69885602	69885602	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	69885602	69885602	G	T	SNP	UGT2B11	ENST00000381096	human	ensembl	58_37c	-1	known	silent	c.501	p.P167	0.061	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
USP53	0	genome.wustl.edu	37	4	120213924	120213924	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	120213924	120213924	A	T	SNP	USP53	NM_019050.2	human	genbank	58_37c	+1	validated	missense	c.2780	p.K927M	1.000	NULL	HMMPfam_UCH,superfamily_SSF54001	-	no_errors
YIF1B	0	genome.wustl.edu	37	19	38798137	38798137	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	38798137	38798137	G	T	SNP	YIF1B	NM_001039672.2	human	genbank	58_37c	-1	validated	silent	c.720	p.G240	1.000	HMMPfam_YIF1	HMMPfam_YIF1	-	no_errors
ZFHX3	0	genome.wustl.edu	37	16	72831358	72831360	+	In_Frame_Del	DEL	TTG	TTG	-	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	16	72831358	72831360	TTG	-	DEL	ZFHX3	NM_006885.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.5223_5221	p.Q1741in_frame_del	0.993:0.992:0.988	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF518B	0	genome.wustl.edu	37	4	10446040	10446040	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	4	10446040	10446040	G	C	SNP	ZNF518B	NM_053042.2	human	genbank	58_37c	-1	validated	missense	c.1913	p.S638C	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF555	0	genome.wustl.edu	37	19	2852854	2852854	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	19	2852854	2852854	C	G	SNP	ZNF555	NM_152791.4	human	genbank	58_37c	+1	validated	missense	c.791	p.A264G	0.992	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),PatternScan_IG_MHC,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF619	0	genome.wustl.edu	37	3	40528692	40528692	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	3	40528692	40528692	C	T	SNP	ZNF619	NM_001145082.2	human	genbank	58_37c	+1	validated	missense	c.811	p.P271S	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF658	0	genome.wustl.edu	37	9	40774928	40774928	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1Y0-01A-11D-A14K-09	TCGA-D8-A1Y0-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33ff7870-fa76-4e48-a223-a8e2441d8f53	95048722-2664-4839-9814-dfa4aeb66198	9	40774928	40774928	T	G	SNP	ZNF658	NM_033160.5	human	genbank	58_37c	-1	validated	missense	c.347	p.Q116P	0.002	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
