Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGTPBP1	0	genome.wustl.edu	37	9	88204545	88204545	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	88204545	88204545	G	A	SNP	AGTPBP1	NM_015239.2	human	genbank	58_37c	-1	validated	missense	c.2500	p.R834W	1.000	HMMPfam_Peptidase_M14,superfamily_SSF53187	HMMPfam_Peptidase_M14,superfamily_ARM-type_fold,superfamily_SSF53187	-	no_errors
AMAC1L1	0	genome.wustl.edu	37	18	11610531	11610531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	18	11610531	11610531	G	A	SNP	AMAC1L1	XM_928960.2	human	genbank	58_37c	+1	model	missense	c.937	p.A313T	0.961	superfamily_SSF103481	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
AMY1A	0	genome.wustl.edu	37	1	104203222	104203222	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	1	104203222	104203222	T	A	SNP	AMY1A	NM_001008221.1	human	genbank	58_37c	+1	reviewed	missense	c.1025	p.F342Y	1.000	HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat	HMMPfam_Alpha-amylase,HMMPfam_Alpha-amylase_C,HMMSmart_Aamy_C,HMMSmart_Aamy,superfamily_Glyco_hydro_cat,superfamily_SSF51011	-	no_errors
APBB1IP	0	genome.wustl.edu	37	10	26825123	26825123	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	26825123	26825123	T	A	SNP	APBB1IP	NM_019043.3	human	genbank	58_37c	+1	validated	missense	c.1021	p.Y341N	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_RA,HMMSmart_RA,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
ATP13A1	0	genome.wustl.edu	37	19	19766896	19766896	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	19766896	19766896	T	C	SNP	ATP13A1	NM_020410.2	human	genbank	58_37c	-1	validated	missense	c.1180	p.I394V	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
C15orf42	0	genome.wustl.edu	37	15	90167690	90167690	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	15	90167690	90167690	A	C	SNP	C15orf42	NM_152259.3	human	genbank	58_37c	+1	validated	missense	c.4149	p.K1383N	0.001	NULL	NULL	-	no_errors
C2CD2	0	genome.wustl.edu	37	21	43338233	43338233	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	21	43338233	43338233	G	A	SNP	C2CD2	NM_015500.1	human	genbank	58_37c	-1	validated	missense	c.701	p.T234M	0.000	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
C5orf33	0	genome.wustl.edu	37	5	36195293	36195293	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	5	36195293	36195293	T	C	SNP	C5orf33	NM_001085411.1	human	genbank	58_37c	-1	validated	missense	c.1282	p.M428V	1.000	NULL	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)	-	no_errors
CACNA1C	0	genome.wustl.edu	37	12	2795355	2795355	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	2795355	2795355	G	C	SNP	CACNA1C	NM_199460.2	human	genbank	58_37c	+1	reviewed	missense	c.5953	p.E1985Q	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CAP2	0	genome.wustl.edu	37	6	17539526	17539526	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	17539526	17539526	G	A	SNP	CAP2	NM_006366.2	human	genbank	58_37c	+1	reviewed	silent	c.663	p.A221	0.000	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,PatternScan_ADH_IRON_2	HMMSmart_SM00673,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,PatternScan_CAP_1,PatternScan_CAP_2,PatternScan_ADH_IRON_2	-	no_errors
CKB	0	genome.wustl.edu	37	14	103988690	103988690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	14	103988690	103988690	C	T	SNP	CKB	NM_001823.3	human	genbank	58_37c	-1	reviewed	silent	c.141	p.T47	0.990	HMMPfam_ATP-gua_PtransN,superfamily_ATP-gua_Ptrans	HMMPfam_ATP-gua_Ptrans,HMMPfam_ATP-gua_PtransN,PatternScan_GUANIDO_KINASE,superfamily_ATP-gua_Ptrans,superfamily_SSF55931	-	no_errors
CUBN	0	genome.wustl.edu	37	10	16945996	16945996	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	16945996	16945996	G	A	SNP	CUBN	NM_001081.3	human	genbank	58_37c	-1	reviewed	silent	c.8031	p.H2677	0.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
DCHS2	0	genome.wustl.edu	37	4	155242117	155242117	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	155242117	155242117	T	A	SNP	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	missense	c.3069	p.R1023S	0.967	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DOCK8	0	genome.wustl.edu	37	9	420960	420960	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	420960	420960	T	A	SNP	DOCK8	NM_203447.3	human	genbank	58_37c	+1	reviewed	missense	c.3831	p.S1277R	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
DPCD	0	genome.wustl.edu	37	10	103360972	103360972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	103360972	103360972	C	T	SNP	DPCD	NM_015448.1	human	genbank	58_37c	+1	provisional	missense	c.283	p.R95C	1.000	NULL	NULL	-	no_errors
DUSP16	0	genome.wustl.edu	37	12	12640024	12640024	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	12640024	12640024	G	A	SNP	DUSP16	NM_030640.2	human	genbank	58_37c	-1	reviewed	missense	c.629	p.P210L	1.000	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799	HMMPfam_DSPc,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_Rhodanese-like,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_DSPc,superfamily_SSF52799	-	no_errors
EIF5B	0	genome.wustl.edu	37	2	99988165	99988165	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	2	99988165	99988165	T	A	SNP	EIF5B	NM_015904.3	human	genbank	58_37c	+1	reviewed	silent	c.1524	p.A508	0.990	NULL	HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_Initiation factor IF2/eIF5b domain 3,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2366	2366	+	RNA	SNP	G	C	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	MT	2366	2366	G	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	664	664	+	RNA	SNP	G	A	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	MT	664	664	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ERMP1	0	genome.wustl.edu	37	9	5830922	5830922	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	5830922	5830922	C	G	SNP	ERMP1	NM_024896.2	human	genbank	58_37c	-1	validated	missense	c.445	p.V149L	0.012	superfamily_Zn-dependent exopeptidases	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases	-	no_errors
FAM129B	0	genome.wustl.edu	37	9	130287422	130287422	+	Silent	SNP	T	T	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	130287422	130287422	T	G	SNP	FAM129B	NM_022833.2	human	genbank	58_37c	-1	validated	silent	c.336	p.P112	1.000	HMMSmart_PH,superfamily_SSF50729	HMMSmart_PH,superfamily_SSF50729	-	no_errors
FAM8A1	0	genome.wustl.edu	37	6	17608448	17608448	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	17608448	17608448	A	C	SNP	FAM8A1	NM_016255.2	human	genbank	58_37c	+1	validated	missense	c.1120	p.K374Q	1.000	HMMPfam_RDD	HMMPfam_RDD	-	no_errors
FBXO18	0	genome.wustl.edu	37	10	5951018	5951018	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	5951018	5951018	G	A	SNP	FBXO18	NM_032807.3	human	genbank	58_37c	+1	reviewed	missense	c.1037	p.R346Q	1.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540,superfamily_SSF81383	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40399385	40399385	+	Missense_Mutation	SNP	C	C	T	rs78608182	byFrequency	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	40399385	40399385	C	T	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	missense	c.6310	p.G2104R	0.000	HMMPfam_VWD,HMMSmart_VWD	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
GNRH2	0	genome.wustl.edu	37	20	3026345	3026346	+	Frame_Shift_Ins	INS	-	-	GCCCC	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	20	3026345	3026346	-	GCCCC	INS	GNRH2	NM_001501.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.326_327	p.P113fs	0.010:0.024	NULL	HMMPfam_GnRH,PatternScan_GNRH	-	no_errors
GRIA1	0	genome.wustl.edu	37	5	153026664	153026664	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	5	153026664	153026664	C	G	SNP	GRIA1	NM_000827.3	human	genbank	58_37c	+1	reviewed	missense	c.397	p.L133V	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168376967	168376968	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	168376967	168376968	-	G	INS	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	frame_shift_ins	c.366_365	p.Q122fs	0.009:0.005	NULL	NULL	-	no_errors
ILF2	0	genome.wustl.edu	37	1	153636538	153636538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	1	153636538	153636538	G	A	SNP	ILF2	NM_004515.2	human	genbank	58_37c	-1	reviewed	missense	c.725	p.P242L	1.000	HMMPfam_DZF,HMMSmart_SM00572	HMMPfam_DZF,HMMSmart_SM00572,superfamily_Nucleotidyltransferase	-	no_errors
KCNK5	0	genome.wustl.edu	37	6	39162069	39162069	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	39162069	39162069	G	A	SNP	KCNK5	NM_003740.3	human	genbank	58_37c	-1	reviewed	silent	c.510	p.G170	0.086	HMMPfam_Ion_trans_2,superfamily_SSF81324	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KIAA1737	0	genome.wustl.edu	37	14	77580648	77580648	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	14	77580648	77580648	A	C	SNP	KIAA1737	NM_033426.2	human	genbank	58_37c	+1	validated	missense	c.1187	p.H396P	0.497	NULL	NULL	-	no_errors
KIFC1	0	genome.wustl.edu	37	6	33372827	33372827	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	33372827	33372827	C	T	SNP	KIFC1	NM_002263.3	human	genbank	58_37c	+1	validated	missense	c.955	p.P319S	1.000	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KLHL8	0	genome.wustl.edu	37	4	88106441	88106441	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	88106441	88106441	G	A	SNP	KLHL8	NM_020803.3	human	genbank	58_37c	-1	validated	nonsense	c.727	p.Q243*	1.000	HMMPfam_BACK	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LIPF	0	genome.wustl.edu	37	10	90427417	90427417	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	90427417	90427417	A	G	SNP	LIPF	NM_004190.2	human	genbank	58_37c	+1	reviewed	missense	c.197	p.Y66C	0.999	HMMPfam_Abhydro_lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_Abhydrolase_1,HMMPfam_Abhydro_lipase,PatternScan_LIPASE_SER,superfamily_alpha/beta-Hydrolases	-	no_errors
LIPN	0	genome.wustl.edu	37	10	90524285	90524285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	10	90524285	90524285	G	T	SNP	LIPN	NM_001102469.1	human	genbank	58_37c	+1	validated	missense	c.345	p.W115C	1.000	HMMPfam_Abhydrolase_1,superfamily_SSF53474	HMMPfam_Abhydrolase_1,HMMPfam_Abhydro_lipase,PatternScan_LIPASE_SER,superfamily_SSF53474	-	no_errors
LOC642236	0	genome.wustl.edu	37	9	68430233	68430233	+	RNA	SNP	T	T	G	rs4296242	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	68430233	68430233	T	G	SNP	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC643310	0	genome.wustl.edu	37	X	92542797	92542797	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	X	92542797	92542797	G	A	SNP	LOC643310	XR_038903.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC729057	0	genome.wustl.edu	37	22	16123793	16123793	+	RNA	SNP	G	G	A	rs11703326	byHapMap	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	22	16123793	16123793	G	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.007	-	-	-	no_errors
MC3R	0	genome.wustl.edu	37	20	54824328	54824328	+	Silent	SNP	C	C	T	rs148382606	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	20	54824328	54824328	C	T	SNP	MC3R	NM_019888.3	human	genbank	58_37c	+1	reviewed	silent	c.429	p.Y143	1.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MTCH1	0	genome.wustl.edu	37	6	36940433	36940433	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	36940433	36940433	A	C	SNP	MTCH1	ENST00000373627	human	ensembl	58_37c	-1	known	missense	c.901	p.S301A	1.000	superfamily_Mitochondrial carrier	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100637521	100637521	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	7	100637521	100637521	C	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.4106	p.T1369R	0.122	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195505811	195505811	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	3	195505811	195505811	T	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.12256	p.T4086A	0.012	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NPAT	0	genome.wustl.edu	37	11	108059913	108059913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	11	108059913	108059913	C	T	SNP	NPAT	NM_002519.2	human	genbank	58_37c	-1	validated	missense	c.476	p.R159Q	0.019	NULL	HMMSmart_SM00667	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NRXN2	0	genome.wustl.edu	37	11	64416348	64416348	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	11	64416348	64416348	A	G	SNP	NRXN2	NM_015080.2	human	genbank	58_37c	-1	reviewed	silent	c.3141	p.N1047	0.891	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
OR56A4	0	genome.wustl.edu	37	11	6024337	6024337	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	11	6024337	6024337	C	T	SNP	OR56A4	NM_001005179.2	human	genbank	58_37c	-1	provisional	silent	c.42	p.Q14	0.000	NULL	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
PLD5	0	genome.wustl.edu	37	1	242253225	242253225	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	1	242253225	242253225	G	T	SNP	PLD5	NM_152666.1	human	genbank	58_37c	-1	provisional	missense	c.1266	p.F422L	0.994	NULL	HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024	-	no_errors
POTEC	0	genome.wustl.edu	37	18	14535001	14535001	+	Silent	SNP	G	G	C	rs61997955	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	18	14535001	14535001	G	C	SNP	POTEC	NM_001137671.1	human	genbank	58_37c	-1	validated	silent	c.816	p.G272	0.900	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
PPM1D	0	genome.wustl.edu	37	17	58725291	58725291	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	17	58725291	58725291	G	A	SNP	PPM1D	NM_003620.2	human	genbank	58_37c	+1	reviewed	missense	c.865	p.V289M	1.000	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	PatternScan_PP2C,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
PTPRB	0	genome.wustl.edu	37	12	70974895	70974895	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	70974895	70974895	G	A	SNP	PTPRB	NM_001109754.1	human	genbank	58_37c	-1	reviewed	silent	c.2499	p.S833	0.001	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Ricin_B_lectin,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Ricin B-like lectins,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RAB14	0	genome.wustl.edu	37	9	123943767	123943767	+	Silent	SNP	A	G	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	9	123943767	123943767	A	G	SNP	RAB14	NM_016322.3	human	genbank	58_37c	-1	validated	silent	c.555	p.A185	0.945	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RGPD3	0	genome.wustl.edu	37	2	107040572	107040572	+	Missense_Mutation	SNP	T	T	C	rs3870235	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	2	107040572	107040572	T	C	SNP	RGPD3	NM_001144013.1	human	genbank	58_37c	-1	validated	missense	c.3851	p.H1284R	1.000	NULL	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip,HMMPfam_TPR_1,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
RNF138P1	0	genome.wustl.edu	37	5	54826411	54826411	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	5	54826411	54826411	G	A	SNP	RNF138P1	NR_001575.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.997	-	-	-	pseudogene
SCN11A	0	genome.wustl.edu	37	3	38892206	38892206	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	3	38892206	38892206	T	C	SNP	SCN11A	NM_014139.2	human	genbank	58_37c	-1	validated	missense	c.4093	p.S1365G	0.006	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SDHAP3	0	genome.wustl.edu	37	5	1576364	1576364	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	5	1576364	1576364	G	A	SNP	SDHAP3	NR_003263.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.992	-	-	-	pseudogene
SIRT2	0	genome.wustl.edu	37	19	39369929	39369929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	39369929	39369929	G	A	SNP	SIRT2	NM_012237.2	human	genbank	58_37c	-1	reviewed	missense	c.1036	p.R346W	0.998	superfamily_DHS-like NAD/FAD-binding domain	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain	-	no_errors
SLC7A11	0	genome.wustl.edu	37	4	139144461	139144461	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	139144461	139144461	T	G	SNP	SLC7A11	NM_014331.3	human	genbank	58_37c	-1	validated	missense	c.538	p.N180H	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SPRY2	0	genome.wustl.edu	37	13	80910967	80910967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	13	80910967	80910967	G	A	SNP	SPRY2	NM_005842.2	human	genbank	58_37c	-1	reviewed	missense	c.874	p.R292C	1.000	HMMPfam_Sprouty	HMMPfam_Sprouty	-	no_errors
SRRM4	0	genome.wustl.edu	37	12	119591417	119591417	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	119591417	119591417	C	T	SNP	SRRM4	NM_194286.2	human	genbank	58_37c	+1	validated	missense	c.1354	p.R452C	0.987	NULL	NULL	-	no_errors
TAF4	0	genome.wustl.edu	37	20	60578311	60578311	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	20	60578311	60578311	G	C	SNP	TAF4	NM_003185.3	human	genbank	58_37c	-1	reviewed	silent	c.2391	p.A797	0.026	NULL	HMMPfam_TAFH,HMMSmart_TAFH,HMMPfam_TAF4,superfamily_Histone-fold	-	no_errors
THBS1	0	genome.wustl.edu	37	15	39874617	39874619	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	15	39874617	39874619	GAA	-	DEL	THBS1	NM_003246.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.291_293	p.K99in_frame_del	1.000:1.000:1.000	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00179,HMMSmart_SM00210,HMMPfam_TSP_3,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,superfamily_TSP type-3 repeat,superfamily_EGF/Laminin	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	17	7578212	7578212	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.637	p.R213*	0.893	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TREML1	0	genome.wustl.edu	37	6	41122014	41122014	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	6	41122014	41122014	G	C	SNP	TREML1	NM_178174.2	human	genbank	58_37c	-1	provisional	missense	c.13	p.L5V	0.429	NULL	HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
TRIM61	0	genome.wustl.edu	37	4	165890903	165890903	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	4	165890903	165890903	T	C	SNP	TRIM61	NM_001012414.2	human	genbank	58_37c	-1	validated	silent	c.252	p.R84	0.015	superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ULK4	0	genome.wustl.edu	37	3	41938435	41938435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	3	41938435	41938435	G	A	SNP	ULK4	NM_017886.2	human	genbank	58_37c	-1	validated	missense	c.1409	p.S470L	0.685	superfamily_ARM-type_fold	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
USP32	0	genome.wustl.edu	37	17	58275761	58275761	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	17	58275761	58275761	G	A	SNP	USP32	NM_032582.3	human	genbank	58_37c	-1	validated	silent	c.3294	p.P1098	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMSmart_EFh,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
VPS33A	0	genome.wustl.edu	37	12	122720362	122720362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	12	122720362	122720362	G	A	SNP	VPS33A	NM_022916.4	human	genbank	58_37c	-1	validated	missense	c.1411	p.R471C	0.998	HMMPfam_Sec1,superfamily_Sec1-like	HMMPfam_Sec1,superfamily_Sec1-like	-	no_errors
WRN	0	genome.wustl.edu	37	8	30958371	30958371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	8	30958371	30958371	C	T	SNP	WRN	NM_000553.4	human	genbank	58_37c	+1	reviewed	missense	c.1988	p.T663M	0.849	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HRDC,HMMSmart_SM00341,HMMPfam_3_5_exonuc,HMMSmart_SM00474,HMMPfam_DEAD,superfamily_Ribonuclease H-like,HMMSmart_SM00487,HMMPfam_RQC,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZNF414	0	genome.wustl.edu	37	19	8577364	8577364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	8577364	8577364	C	T	SNP	ZNF414	NM_032370.2	human	genbank	58_37c	-1	validated	missense	c.437	p.R146H	1.000	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF90	0	genome.wustl.edu	37	19	20228629	20228629	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1Y3-01A-11D-A159-09	TCGA-D8-A1Y3-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	64fa29ff-534f-4b22-b0c4-513e8657edb1	f063a7c5-7db1-4c0a-864f-f9bbf945537e	19	20228629	20228629	A	G	SNP	ZNF90	NM_007138.1	human	genbank	58_37c	+1	validated	missense	c.266	p.Q89R	0.005	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
