Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADCY5	0	genome.wustl.edu	37	3	123166299	123166302	+	Frame_Shift_Del	DEL	GCGA	GCGA	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	GCGA	GCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	123166299	123166302	GCGA	-	DEL	ADCY5	NM_183357.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.1094_1091	p.I364fs	1.000:1.000:0.999:1.000	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ADPRH	0	genome.wustl.edu	37	3	119301156	119301156	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	119301156	119301156	A	T	SNP	ADPRH	NM_001125.2	human	genbank	58_37c	+1	reviewed	missense	c.140	p.D47V	0.079	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase	-	no_errors
ANK1	0	genome.wustl.edu	37	8	41575713	41575713	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	41575713	41575713	T	C	SNP	ANK1	NM_001142446.1	human	genbank	58_37c	-1	reviewed	missense	c.1216	p.T406A	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
ANKH	0	genome.wustl.edu	37	5	14871377	14871377	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	5	14871377	14871377	C	T	SNP	ANKH	ENST00000505140	human	ensembl	58_37c	-1	known	silent	c.180	p.L60	0.988	NULL	HMMPfam_ANKH	-	no_errors
APOBEC2	0	genome.wustl.edu	37	6	41029494	41029494	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	6	41029494	41029494	G	A	SNP	APOBEC2	NM_006789.3	human	genbank	58_37c	+1	validated	missense	c.559	p.V187I	0.278	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like	HMMPfam_APOBEC_C,HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like	-	no_errors
APPBP2	0	genome.wustl.edu	37	17	58525152	58525152	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	17	58525152	58525152	A	T	SNP	APPBP2	NM_006380.2	human	genbank	58_37c	-1	reviewed	missense	c.1548	p.D516E	1.000	superfamily_TPR-like	HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
BAP1	0	genome.wustl.edu	37	3	52436639	52436664	+	Frame_Shift_Del	DEL	TAAAGGTGCAGATGAACTCATCGTAG	TAAAGGTGCAGATGAACTCATCGTAG	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	TAAAGGTGCAGATGAACTCATCGTAG	TAAAGGTGCAGATGAACTCATCGTAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	52436639	52436664	TAAAGGTGCAGATGAACTCATCGTAG	-	DEL	BAP1	NM_004656.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2035_2010	p.Y671fs	1.000:0.997:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.968:1.000:1.000:0.026:0.999:1.000:1.000	NULL	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	-	no_errors
BAT3	0	genome.wustl.edu	37	6	31611965	31611965	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	6	31611965	31611965	T	C	SNP	BAT3	NM_004639.3	human	genbank	58_37c	-1	reviewed	missense	c.1472	p.Q491R	1.000	NULL	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like	-	no_errors
BLM	0	genome.wustl.edu	37	15	91354482	91354509	+	Frame_Shift_Del	DEL	GGAAGAAGTGCCGCTGAGGAGCTCGACG	GGAAGAAGTGCCGCTGAGGAGCTCGACG	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	GGAAGAAGTGCCGCTGAGGAGCTCGACG	GGAAGAAGTGCCGCTGAGGAGCTCGACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	15	91354482	91354509	GGAAGAAGTGCCGCTGAGGAGCTCGACG	-	DEL	BLM	NM_000057.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.3922_3949	p.G1308fs	0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.004:0.008:0.045:0.234:0.227:0.042:0.002:0.000:0.000:0.004:0.007:0.006:0.989	NULL	HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HRDC,HMMSmart_HRDC,PatternScan_DEAH_ATP_HELICASE,superfamily_HRDC_like,HMMPfam_DEAD,HMMPfam_BDHCT,HMMSmart_DEXDc,HMMPfam_RQC,superfamily_SSF52540	-	no_errors
C14orf149	0	genome.wustl.edu	37	14	59950711	59950711	+	Silent	SNP	C	T	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	14	59950711	59950711	C	T	SNP	C14orf149	NM_144581.1	human	genbank	58_37c	-1	provisional	silent	c.324	p.V108	1.000	HMMPfam_Pro_racemase,superfamily_Diaminopimelate epimerase-like	HMMPfam_Pro_racemase,superfamily_Diaminopimelate epimerase-like	-	no_errors
C16orf85	0	genome.wustl.edu	37	16	88620346	88620371	+	Frame_Shift_Del	DEL	CGCAGTGCAGAGCTGGGACGGACGCC	CGCAGTGCAGAGCTGGGACGGACGCC	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	CGCAGTGCAGAGCTGGGACGGACGCC	CGCAGTGCAGAGCTGGGACGGACGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	16	88620346	88620371	CGCAGTGCAGAGCTGGGACGGACGCC	-	DEL	C16orf85	ENST00000378416	human	ensembl	58_37c	-1	known	frame_shift_del	c.284_259	p.G87fs	0.000:0.000:0.001:0.001:0.017:0.016:0.015:0.011:0.011:0.009:0.006:0.006:0.004:0.004:0.006:0.007:0.006:0.005:0.002:0.001:0.000:0.000:0.001:0.001:0.003:0.004	NULL	NULL	-	no_errors
C21orf29	0	genome.wustl.edu	37	21	45947265	45947265	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	21	45947265	45947265	G	C	SNP	C21orf29	NM_144991.2	human	genbank	58_37c	-1	provisional	silent	c.1059	p.V353	1.000	NULL	HMMSmart_SM00210,HMMPfam_EPTP,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
C6orf89	0	genome.wustl.edu	37	6	36884276	36884276	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	6	36884276	36884276	C	G	SNP	C6orf89	NM_152734.3	human	genbank	58_37c	+1	validated	missense	c.772	p.H258D	0.007	NULL	NULL	-	no_errors
CARD9	0	genome.wustl.edu	37	9	139265150	139265150	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	9	139265150	139265150	C	T	SNP	CARD9	NM_052813.4	human	genbank	58_37c	-1	reviewed	missense	c.631	p.D211N	0.992	NULL	HMMPfam_CARD,superfamily_DEATH domain	-	no_errors
CCNL1	0	genome.wustl.edu	37	3	156868125	156868133	+	In_Frame_Del	DEL	AAATCGAAC	AAATCGAAC	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	AAATCGAAC	AAATCGAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	156868125	156868133	AAATCGAAC	-	DEL	CCNL1	NM_020307.2	human	genbank	58_37c	-1	validated	in_frame_del	c.720_712	p.VRF238in_frame_del	1.000:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000	HMMSmart_SM00385,superfamily_Cyclin-like	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors
CD44	0	genome.wustl.edu	37	11	35226171	35226171	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	11	35226171	35226171	G	C	SNP	CD44	ENST00000428726	human	ensembl	58_37c	+1	known	missense	c.1199	p.R400P	0.037	NULL	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
COL1A1	0	genome.wustl.edu	37	17	48265251	48265277	+	In_Frame_Del	DEL	GACCCTGGAGGCCAGAGAAGCCACGGT	GACCCTGGAGGCCAGAGAAGCCACGGT	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	GACCCTGGAGGCCAGAGAAGCCACGGT	GACCCTGGAGGCCAGAGAAGCCACGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	17	48265251	48265277	GACCCTGGAGGCCAGAGAAGCCACGGT	-	DEL	COL1A1	NM_000088.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.3355_3329	p.HRGFSGLQG1110in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.997:1.000:1.000:0.949:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen	-	no_errors
CSMD2	0	genome.wustl.edu	37	1	33988932	33988932	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	33988932	33988932	T	C	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.10052	p.D3351G	0.982	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
CSMD3	0	genome.wustl.edu	37	8	114326893	114326893	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	114326893	114326893	A	G	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	missense	c.308	p.I103T	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DKFZp686A1627	0	genome.wustl.edu	37	13	19624178	19624178	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	13	19624178	19624178	G	A	SNP	DKFZp686A1627	NR_002801.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
DSP	0	genome.wustl.edu	37	6	7583101	7583111	+	Frame_Shift_Del	DEL	CTCAATATTCC	CTCAATATTCC	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	CTCAATATTCC	CTCAATATTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	6	7583101	7583111	CTCAATATTCC	-	DEL	DSP	NM_004415.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.5606_5616	p.Y1871fs	0.982:0.816:1.000:1.000:0.998:1.000:0.993:0.974:1.000:1.000:1.000	NULL	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
EGFR	0	genome.wustl.edu	37	7	55268034	55268034	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	7	55268034	55268034	C	A	SNP	EGFR	NM_005228.3	human	genbank	58_37c	+1	reviewed	silent	c.2874	p.R958	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_L domain-like	-	no_errors
ENSG00000187537	0	genome.wustl.edu	37	14	20012777	20012777	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	14	20012777	20012777	C	G	SNP	ENSG00000187537	ENST00000439503	human	ensembl	58_37c	-1	known	missense	c.978	p.E326D	0.106	superfamily_Ankyrin repeat	HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6723	6723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	MT	6723	6723	G	A	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.820	p.V274I	NULL	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000198886	0	genome.wustl.edu	37	MT	11038	11038	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	MT	11038	11038	A	C	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.279	p.K93N	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9494	9494	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	MT	9494	9494	A	G	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	silent	c.288	p.G96	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2627	2627	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	MT	2627	2627	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
EPB41L5	0	genome.wustl.edu	37	2	120799675	120799675	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	120799675	120799675	G	C	SNP	EPB41L5	NM_020909.3	human	genbank	58_37c	+1	validated	missense	c.274	p.A92P	1.000	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like	HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
FLG2	0	genome.wustl.edu	37	1	152327278	152327278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	152327278	152327278	C	T	SNP	FLG2	NM_001014342.2	human	genbank	58_37c	-1	provisional	missense	c.2984	p.S995N	0.780	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
GDAP1	0	genome.wustl.edu	37	8	75276444	75276444	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	75276444	75276444	A	G	SNP	GDAP1	NM_018972.2	human	genbank	58_37c	+1	reviewed	missense	c.919	p.T307A	1.000	NULL	HMMPfam_GST_N,HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_Thioredoxin-like	-	no_errors
GYPB	0	genome.wustl.edu	37	4	144922352	144922352	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	4	144922352	144922352	G	T	SNP	GYPB	NM_002100.3	human	genbank	58_37c	-1	reviewed	nonsense	c.122	p.S41*	0.000	HMMPfam_Glycophorin_A	HMMPfam_Glycophorin_A,PatternScan_GLYCOPHORIN_A	-	no_errors
HMCN1	0	genome.wustl.edu	37	1	185951458	185951458	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	185951458	185951458	G	T	SNP	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	missense	c.2727	p.L909F	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
HPS3	0	genome.wustl.edu	37	3	148880113	148880113	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	148880113	148880113	T	A	SNP	HPS3	NM_032383.3	human	genbank	58_37c	+1	reviewed	missense	c.2285	p.F762Y	0.994	NULL	NULL	-	no_errors
HSD3B1	0	genome.wustl.edu	37	1	120054136	120054136	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	120054136	120054136	C	A	SNP	HSD3B1	NM_000862.2	human	genbank	58_37c	+1	validated	missense	c.156	p.N52K	0.311	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd	-	no_errors
HUWE1	0	genome.wustl.edu	37	X	53581746	53581746	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	X	53581746	53581746	C	T	SNP	HUWE1	NM_031407.4	human	genbank	58_37c	-1	reviewed	missense	c.8342	p.G2781E	0.392	NULL	HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat	-	no_errors
IGSF10	0	genome.wustl.edu	37	3	151162894	151162894	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	151162894	151162894	T	A	SNP	IGSF10	NM_178822.4	human	genbank	58_37c	-1	validated	silent	c.4875	p.P1625	0.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
IL11	0	genome.wustl.edu	37	19	55880300	55880300	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	55880300	55880300	C	G	SNP	IL11	NM_000641.2	human	genbank	58_37c	-1	reviewed	missense	c.17	p.R6P	0.997	HMMPfam_IL11	HMMPfam_IL11	-	no_errors
ITGA11	0	genome.wustl.edu	37	15	68612682	68612682	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	15	68612682	68612682	T	A	SNP	ITGA11	NM_001004439.1	human	genbank	58_37c	-1	reviewed	silent	c.2457	p.A819	0.005	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
ITSN2	0	genome.wustl.edu	37	2	24494689	24494689	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	24494689	24494689	C	G	SNP	ITSN2	NM_006277.2	human	genbank	58_37c	-1	reviewed	missense	c.2203	p.A735P	0.974	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00027,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_SH3_2,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
LOC100128598	0	genome.wustl.edu	37	20	49626537	49626537	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	20	49626537	49626537	G	A	SNP	LOC100128598	XM_001716142.1	human	genbank	58_37c	+1	model	missense	c.1423	p.V475I	1.000	NULL	NULL	-	no_errors
LOC100129375	0	genome.wustl.edu	37	2	139170723	139170723	+	RNA	SNP	T	T	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	139170723	139170723	T	C	SNP	LOC100129375	XR_039335.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.773	-	-	-	pseudogene
LOC100288560	0	genome.wustl.edu	37	X	53852456	53852456	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	X	53852456	53852456	T	G	SNP	LOC100288560	XM_002344197.1	human	genbank	58_37c	+1	model	missense	c.75	p.H25Q	0.000	NULL	HMMPfam_Ribosomal_S18,superfamily_Ribosomal protein S18	-	no_errors
LOC149501	0	genome.wustl.edu	37	1	157043588	157043588	+	RNA	SNP	T	T	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	157043588	157043588	T	G	SNP	LOC149501	XR_017100.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC643955	0	genome.wustl.edu	37	7	62752982	62752982	+	RNA	SNP	T	T	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	7	62752982	62752982	T	A	SNP	LOC643955	NR_003952.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.365	-	-	-	pseudogene
LOC646316	0	genome.wustl.edu	37	4	137277399	137277399	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	4	137277399	137277399	G	A	SNP	LOC646316	XR_039453.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.020	-	-	-	pseudogene
LOC651714	0	genome.wustl.edu	37	3	195346312	195346312	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	195346312	195346312	C	T	SNP	LOC651714	XR_078298.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.132	-	-	-	pseudogene
MKI67	0	genome.wustl.edu	37	10	129904060	129904086	+	In_Frame_Del	DEL	ACTGGTAGGACCTCTTCTTTCACACCT	ACTGGTAGGACCTCTTCTTTCACACCT	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	ACTGGTAGGACCTCTTCTTTCACACCT	ACTGGTAGGACCTCTTCTTTCACACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	10	129904060	129904086	ACTGGTAGGACCTCTTCTTTCACACCT	-	DEL	MKI67	NM_002417.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.6044_6018	p.VKEEVLPVG2008in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.006:0.029:0.031:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	HMMPfam_K167R	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R	-	no_errors
MYBL1	0	genome.wustl.edu	37	8	67488508	67488508	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	67488508	67488508	C	A	SNP	MYBL1	NM_001080416.2	human	genbank	58_37c	-1	validated	nonsense	c.1204	p.E402*	1.000	NULL	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors
MYF6	0	genome.wustl.edu	37	12	81101569	81101569	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	12	81101569	81101569	C	A	SNP	MYF6	NM_002469.2	human	genbank	58_37c	+1	reviewed	missense	c.71	p.P24Q	0.996	HMMPfam_Basic,HMMSmart_SM00520	HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_Basic,HMMSmart_SM00520,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
NFIX	0	genome.wustl.edu	37	19	13186433	13186433	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	13186433	13186433	C	G	SNP	NFIX	NM_002501.2	human	genbank	58_37c	+1	validated	silent	c.903	p.S301	1.000	HMMPfam_CTF_NFI	HMMPfam_CTF_NFI,HMMPfam_MH1,HMMSmart_DWA,HMMPfam_NfI_DNAbd_pre-N,PatternScan_CTF_NFI_1	-	no_errors
OR2J2	0	genome.wustl.edu	37	6	29141639	29141639	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	6	29141639	29141639	C	A	SNP	OR2J2	NM_030905.2	human	genbank	58_37c	+1	validated	missense	c.227	p.T76N	0.988	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR2Z1	0	genome.wustl.edu	37	19	8842092	8842092	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	8842092	8842092	A	T	SNP	OR2Z1	NM_001004699.1	human	genbank	58_37c	+1	provisional	missense	c.702	p.R234S	0.002	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5W2	0	genome.wustl.edu	37	11	55681285	55681285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	11	55681285	55681285	C	T	SNP	OR5W2	NM_001001960.1	human	genbank	58_37c	-1	provisional	missense	c.774	p.M258I	0.995	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PHOSPHO2	0	genome.wustl.edu	37	2	170558059	170558059	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	2	170558059	170558059	A	G	SNP	PHOSPHO2	NM_001008489.2	human	genbank	58_37c	+1	provisional	missense	c.578	p.D193G	0.136	HMMPfam_Put_Phosphatase	HMMPfam_Put_Phosphatase,superfamily_HAD-like	-	no_errors
PIK3CD	0	genome.wustl.edu	37	1	9777639	9777639	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	9777639	9777639	C	G	SNP	PIK3CD	NM_005026.3	human	genbank	58_37c	+1	validated	missense	c.975	p.I325M	0.008	HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKLR	0	genome.wustl.edu	37	1	155263003	155263003	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	1	155263003	155263003	A	C	SNP	PKLR	NM_000298.5	human	genbank	58_37c	-1	reviewed	missense	c.1401	p.C467W	1.000	HMMPfam_PK_C,superfamily_PK C-terminal domain-like	superfamily_PK beta-barrel domain-like,HMMPfam_PK,HMMPfam_PK_C,superfamily_PK C-terminal domain-like,superfamily_Phosphoenolpyruvate/pyruvate domain,PatternScan_PYRUVATE_KINASE	-	no_errors
PLIN4	0	genome.wustl.edu	37	19	4513410	4513410	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	4513410	4513410	G	A	SNP	PLIN4	NM_001080400.1	human	genbank	58_37c	-1	provisional	nonsense	c.520	p.Q174*	0.887	NULL	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors
RAB14	0	genome.wustl.edu	37	9	123943823	123943823	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	9	123943823	123943823	C	G	SNP	RAB14	NM_016322.3	human	genbank	58_37c	-1	validated	missense	c.499	p.E167Q	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RELN	0	genome.wustl.edu	37	7	103183246	103183246	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	7	103183246	103183246	G	C	SNP	RELN	NM_005045.3	human	genbank	58_37c	-1	reviewed	missense	c.6603	p.N2201K	1.000	NULL	HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196	-	no_errors
SALL2	0	genome.wustl.edu	37	14	22005013	22005013	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	14	22005013	22005013	C	G	SNP	SALL2	NM_005407.1	human	genbank	58_37c	-1	validated	missense	c.43	p.D15H	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SEPP1	0	genome.wustl.edu	37	5	42800932	42800932	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	5	42800932	42800932	G	C	SNP	SEPP1	NM_001093726.1	human	genbank	58_37c	-1	reviewed	missense	c.1126	p.R376G	1.000	HMMPfam_SelP_C	HMMPfam_SelP_N,HMMPfam_SelP_C	-	pseudogene
SIGLEC5	0	genome.wustl.edu	37	19	52115496	52115496	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	19	52115496	52115496	C	G	SNP	SIGLEC5	NM_003830.2	human	genbank	58_37c	-1	validated	missense	c.1644	p.K548N	0.010	NULL	PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
SLC34A1	0	genome.wustl.edu	37	5	176813238	176813238	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	5	176813238	176813238	C	G	SNP	SLC34A1	NM_003052.4	human	genbank	58_37c	+1	reviewed	silent	c.276	p.P92	0.022	NULL	HMMPfam_Na_Pi_cotrans	-	no_errors
SLC9A5	0	genome.wustl.edu	37	16	67283105	67283105	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	16	67283105	67283105	G	T	SNP	SLC9A5	NM_004594.2	human	genbank	58_37c	+1	validated	splice_site	c.187+1	e1+1	1.000	-	-	-	no_errors
SPDYE7P	0	genome.wustl.edu	37	7	72334809	72334809	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	7	72334809	72334809	C	T	SNP	SPDYE7P	NR_003666.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
SRRM4	0	genome.wustl.edu	37	12	119588983	119588994	+	In_Frame_Del	DEL	CCCCCAGGTACA	CCCCCAGGTACA	-	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	CCCCCAGGTACA	CCCCCAGGTACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	12	119588983	119588994	CCCCCAGGTACA	-	DEL	SRRM4	NM_194286.2	human	genbank	58_37c	+1	validated	in_frame_del	c.1238_1249	p.PRYT414in_frame_del	1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.999	NULL	NULL	-	no_errors
STARD9	0	genome.wustl.edu	37	15	42977022	42977022	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	15	42977022	42977022	A	C	SNP	STARD9	XM_001129482.3	human	genbank	58_37c	+1	model	silent	c.3102	p.P1034	0.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Bet v1-like	-	no_errors
TCTA	0	genome.wustl.edu	37	3	49450057	49450057	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	49450057	49450057	G	A	SNP	TCTA	NM_022171.2	human	genbank	58_37c	+1	validated	silent	c.198	p.G66	1.000	NULL	NULL	-	no_errors
TFAP2C	0	genome.wustl.edu	37	20	55206502	55206502	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	20	55206502	55206502	G	T	SNP	TFAP2C	NM_003222.3	human	genbank	58_37c	+1	reviewed	missense	c.290	p.G97V	0.997	NULL	HMMPfam_TF_AP-2	-	no_errors
UBXN2B	0	genome.wustl.edu	37	8	59352284	59352284	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	59352284	59352284	G	C	SNP	UBXN2B	NM_001077619.1	human	genbank	58_37c	+1	validated	missense	c.626	p.R209T	0.696	HMMPfam_SEP,HMMSmart_SEP	HMMPfam_UBX,HMMSmart_UBX,HMMPfam_SEP,HMMSmart_SEP,superfamily_SEP,superfamily_SSF54236	-	no_errors
WDFY4	0	genome.wustl.edu	37	10	50025362	50025362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	10	50025362	50025362	G	A	SNP	WDFY4	NM_020945.1	human	genbank	58_37c	+1	validated	missense	c.5413	p.V1805I	0.138	NULL	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
ZCWPW2	0	genome.wustl.edu	37	3	28557108	28557108	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	28557108	28557108	C	A	SNP	ZCWPW2	NM_001040432.1	human	genbank	58_37c	+1	provisional	missense	c.780	p.N260K	0.990	NULL	HMMPfam_PWWP,HMMPfam_zf-CW,superfamily_SSF63748	-	no_errors
ZFHX4	0	genome.wustl.edu	37	8	77764960	77764960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	8	77764960	77764960	G	A	SNP	ZFHX4	NM_024721.4	human	genbank	58_37c	+1	validated	missense	c.5668	p.G1890S	0.994	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF407	0	genome.wustl.edu	37	18	72775227	72775227	+	Silent	SNP	C	G	G	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	18	72775227	72775227	C	G	SNP	ZNF407	NM_017757.2	human	genbank	58_37c	+1	reviewed	silent	c.5550	p.L1850	0.000	NULL	HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ZNF80	0	genome.wustl.edu	37	3	113955515	113955515	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27F-01A-11D-A16D-09	TCGA-D8-A27F-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc6d77a9-121b-48ab-a899-713c3d1319a2	a070d518-b1fe-4505-86b5-fc08201a4b61	3	113955515	113955515	C	T	SNP	ZNF80	NM_007136.3	human	genbank	58_37c	-1	validated	missense	c.407	p.S136N	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
