Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARMCX5	0	genome.wustl.edu	37	X	101858272	101858272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	X	101858272	101858272	C	T	SNP	ARMCX5	NM_022838.3	human	genbank	58_37c	+1	validated	silent	c.1203	p.I401	0.000	HMMPfam_DUF634,superfamily_ARM repeat	PatternScan_CPSASE_2,HMMPfam_DUF634,superfamily_ARM repeat	-	no_errors
CDC42EP1	0	genome.wustl.edu	37	22	37964409	37964429	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	-	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	22	37964409	37964429	CAGCGCCTGCTGCAAACCCCT	-	DEL	CDC42EP1	NM_152243.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.758_778	p.ANPSAPA257in_frame_del	0.003:0.000:0.000:0.000:0.000:0.019:0.024:0.016:0.013:0.013:0.000:0.000:0.000:0.001:0.000:0.001:0.004:0.011:0.056:0.092:0.133	NULL	HMMPfam_PBD,HMMSmart_SM00285	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68846166	68846166	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	16	68846166	68846166	G	A	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	silent	c.1137	p.T379	0.582	superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CDH7	0	genome.wustl.edu	37	18	63477101	63477101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	18	63477101	63477101	G	A	SNP	CDH7	NM_004361.2	human	genbank	58_37c	+1	reviewed	silent	c.372	p.A124	0.036	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CELA1	0	genome.wustl.edu	37	12	51740413	51740414	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	12	51740413	51740414	-	C	INS	CELA1	NM_001971.5	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.10_9	p.L3fs	0.551:0.535	NULL	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31242861	31242861	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	12	31242861	31242861	A	C	SNP	DDX11	NM_152438.1	human	genbank	58_37c	+1	reviewed	silent	c.922	p.R308	0.001	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EHMT1	0	genome.wustl.edu	37	9	140707938	140707938	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	9	140707938	140707938	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	58_37c	+1	known	missense	c.3136	p.V1046M	1.000	HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain	HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain	-	no_errors
EIF2AK4	0	genome.wustl.edu	37	15	40295488	40295488	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	15	40295488	40295488	G	T	SNP	EIF2AK4	NM_001013703.2	human	genbank	58_37c	+1	validated	missense	c.3330	p.M1110I	1.000	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_tRNA-synt_2b,HMMPfam_RWD,HMMSmart_SM00591,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_UBC-like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_DNA_POLYMERASE_B,superfamily_Class II aaRS and biotin synthetases	-	no_errors
ENSG00000233000	0	genome.wustl.edu	37	4	49647180	49647180	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	4	49647180	49647180	C	A	SNP	ENSG00000233000	ENST00000413383	human	ensembl	58_37c	+1	known	silent	c.111	p.P37	0.000	NULL	NULL	-	no_stop_codon
ENSG00000249665	0	genome.wustl.edu	37	8	86786366	86786366	+	RNA	SNP	G	G	C	rs140286263	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	8	86786366	86786366	G	C	SNP	ENSG00000249665	ENST00000503540	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.056	-	-	-	no_errors
GAL3ST4	0	genome.wustl.edu	37	7	99757738	99757738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	7	99757738	99757738	C	T	SNP	GAL3ST4	NM_024637.4	human	genbank	58_37c	-1	reviewed	missense	c.1274	p.R425H	1.000	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
GNPNAT1	0	genome.wustl.edu	37	14	53247396	53247396	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	14	53247396	53247396	C	A	SNP	GNPNAT1	NM_198066.3	human	genbank	58_37c	-1	validated	splice_site	c.407+1	e4+1	1.000	-	-	-	no_errors
GPR137B	0	genome.wustl.edu	37	1	236341813	236341813	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	1	236341813	236341813	G	T	SNP	GPR137B	NM_003272.3	human	genbank	58_37c	+1	validated	missense	c.564	p.K188N	0.064	NULL	NULL	-	no_errors
GRIA2	0	genome.wustl.edu	37	4	158238831	158238831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	4	158238831	158238831	G	A	SNP	GRIA2	NM_000826.3	human	genbank	58_37c	+1	reviewed	missense	c.688	p.V230I	1.000	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
GUSB	0	genome.wustl.edu	37	7	65445321	65445321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	7	65445321	65445321	C	T	SNP	GUSB	NM_000181.3	human	genbank	58_37c	-1	reviewed	missense	c.286	p.V96I	0.880	HMMPfam_Glyco_hydro_2_N,superfamily_Galactose-binding domain-like	PatternScan_GLYCOSYL_HYDROL_F2_2,PatternScan_GLYCOSYL_HYDROL_F2_1,HMMPfam_Glyco_hydro_2,superfamily_beta-Galactosidase/glucuronidase domain,HMMPfam_Glyco_hydro_2_C,HMMPfam_Glyco_hydro_2_N,superfamily_Galactose-binding domain-like,superfamily_(Trans)glycosidases	-	no_errors
IGHV4-31	0	genome.wustl.edu	37	14	106805409	106805409	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	14	106805409	106805409	C	T	SNP	IGHV4-31	ENST00000438142	human	ensembl	58_37c	-1	known	missense	c.154	p.G52S	0.000	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
KLHL5	0	genome.wustl.edu	37	4	39114838	39114838	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	4	39114838	39114838	A	G	SNP	KLHL5	ENST00000381933	human	ensembl	58_37c	+1	known	missense	c.2039	p.Q680R	0.993	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MFI2	0	genome.wustl.edu	37	3	196754653	196754653	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	3	196754653	196754653	C	G	SNP	MFI2	NM_005929.4	human	genbank	58_37c	-1	reviewed	missense	c.178	p.A60P	0.000	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_1,PatternScan_TRANSFERRIN_2,PatternScan_TRANSFERRIN_3,superfamily_Periplasmic binding protein-like II	-	no_errors
PADI3	0	genome.wustl.edu	37	1	17597589	17597589	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	1	17597589	17597589	T	C	SNP	PADI3	NM_016233.2	human	genbank	58_37c	+1	reviewed	silent	c.963	p.D321	0.029	HMMPfam_PAD,superfamily_SSF55909	superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909	-	no_errors
PCDH9	0	genome.wustl.edu	37	13	67802512	67802512	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	13	67802512	67802512	C	T	SNP	PCDH9	NM_203487.2	human	genbank	58_37c	-1	reviewed	missense	c.61	p.A21T	1.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like	-	no_errors
PGK1	0	genome.wustl.edu	37	X	77378415	77378415	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	X	77378415	77378415	T	C	SNP	PGK1	NM_000291.3	human	genbank	58_37c	+1	reviewed	missense	c.725	p.F242S	1.000	HMMPfam_PGK,superfamily_Phosphoglycerate kinase	HMMPfam_PGK,superfamily_Phosphoglycerate kinase,PatternScan_PGLYCERATE_KINASE	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PITPNM1	0	genome.wustl.edu	37	11	67260513	67260513	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	11	67260513	67260513	G	A	SNP	PITPNM1	NM_004910.2	human	genbank	58_37c	-1	validated	silent	c.3363	p.A1121	0.740	HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like	HMMPfam_IP_trans,HMMPfam_DDHD,HMMPfam_LNS2,HMMSmart_SM00775,superfamily_Bet v1-like,superfamily_HAD-like	-	no_errors
PTPRN2	0	genome.wustl.edu	37	7	157959701	157959701	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	7	157959701	157959701	G	T	SNP	PTPRN2	NM_002847.3	human	genbank	58_37c	-1	reviewed	missense	c.832	p.P278T	0.137	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RIN1	0	genome.wustl.edu	37	11	66102467	66102467	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	11	66102467	66102467	G	C	SNP	RIN1	NM_004292.2	human	genbank	58_37c	-1	validated	missense	c.803	p.P268R	0.967	NULL	HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00252,HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204),superfamily_SH2 domain	-	no_errors
SCN2A	0	genome.wustl.edu	37	2	166223736	166223736	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	2	166223736	166223736	G	A	SNP	SCN2A	NM_001040142.1	human	genbank	58_37c	+1	reviewed	missense	c.3530	p.R1177Q	0.996	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SCT	0	genome.wustl.edu	37	11	626464	626464	+	Silent	SNP	G	G	A	rs148783373	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	11	626464	626464	G	A	SNP	SCT	NM_021920.2	human	genbank	58_37c	-1	reviewed	silent	c.333	p.G111	0.000	NULL	HMMPfam_Hormone_2,HMMSmart_GLUCA,PatternScan_GLUCAGON	-	no_errors
SLC44A4	0	genome.wustl.edu	37	6	31832672	31832674	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	6	31832672	31832674	AAG	-	DEL	SLC44A4	NM_025257.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1847_1845	p.F618in_frame_del	1.000:1.000:1.000	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
TIMP3	0	genome.wustl.edu	37	22	33255330	33255330	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	22	33255330	33255330	C	A	SNP	TIMP3	NM_000362.4	human	genbank	58_37c	+1	reviewed	missense	c.602	p.P201Q	1.000	NULL	HMMPfam_TIMP,HMMSmart_SM00206,PatternScan_TIMP,superfamily_TIMP-like	-	no_errors
TMPRSS15	0	genome.wustl.edu	37	21	19770556	19770556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	21	19770556	19770556	G	A	SNP	TMPRSS15	NM_002772.2	human	genbank	58_37c	-1	reviewed	missense	c.236	p.S79L	0.991	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_SRCR,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_Trypsin-like serine proteases,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_SEA domain	-	no_errors
ZAN	0	genome.wustl.edu	37	7	100385562	100385596	+	Frame_Shift_Del	DEL	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	novel	unknown	TCGA-D8-A27T-01A-11D-A16D-09	TCGA-D8-A27T-10A-01D-A16D-09	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ecabcc6a-2767-4ad8-ac4f-54cc3d081b6e	bb595689-dcda-48af-b114-e0fe28c3d794	7	100385562	100385596	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	DEL	ZAN	NM_003386.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.7030_7064	p.A2344fs	0.013:0.005:0.000:0.001:0.000:0.000:0.005:0.239:0.512:0.532:0.543:0.259:0.193:0.551:0.747:0.746:0.691:0.313:0.001:0.036:0.867:0.876:0.710:0.622:0.357:0.357:0.884:0.969:0.998:1.000:1.000:1.000:1.000:0.989:0.652	NULL	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
