Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CFHR5	0	genome.wustl.edu	37	1	196973889	196973889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	1	196973889	196973889	C	T	SNP	CFHR5	NM_030787.3	human	genbank	58_37c	+1	reviewed	missense	c.1429	p.R477C	0.006	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	1876	1876	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	MT	1876	1876	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000213352	0	genome.wustl.edu	37	12	63149526	63149529	+	Splice_Site	DEL	ATGA	ATGA	-	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	ATGA	ATGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	12	63149526	63149529	ATGA	-	DEL	ENSG00000213352	ENST00000393625	human	ensembl	58_37c	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:0.998	-	-	-	no_coding_region:pseudogene
ENSG00000219061	0	genome.wustl.edu	37	11	49855112	49855112	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	11	49855112	49855112	T	A	SNP	ENSG00000219061	ENST00000405176	human	ensembl	58_37c	-1	known	silent	c.942	p.G314	0.321	NULL	PatternScan_SERPIN,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000252998	0	genome.wustl.edu	37	10	2140430	2140430	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	10	2140430	2140430	C	T	SNP	ENSG00000252998	ENST00000517189	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.072	-	-	-	no_errors
FAM135B	0	genome.wustl.edu	37	8	139164616	139164616	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	8	139164616	139164616	C	T	SNP	FAM135B	NM_015912.3	human	genbank	58_37c	-1	validated	missense	c.2102	p.R701Q	0.863	NULL	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases	-	no_errors
FAM75A6	0	genome.wustl.edu	37	9	43627675	43627675	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	9	43627675	43627675	C	A	SNP	FAM75A6	NM_001145196.1	human	genbank	58_37c	-1	predicted	missense	c.1012	p.V338F	0.000	NULL	NULL	-	no_errors
FST	0	genome.wustl.edu	37	5	52781027	52781028	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	5	52781027	52781028	-	T	INS	FST	NM_013409.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.922_923	p.E309fs	0.993:1.000	HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors	HMMPfam_Kazal_1,HMMSmart_SM00280,HMMSmart_SM00274,HMMPfam_PRKCSH,HMMPfam_FOLN,superfamily_Kazal-type serine protease inhibitors	-	no_errors
IL22RA1	0	genome.wustl.edu	37	1	24465129	24465129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	1	24465129	24465129	G	A	SNP	IL22RA1	NM_021258.2	human	genbank	58_37c	-1	reviewed	missense	c.119	p.T40M	0.992	superfamily_FN_III-like,HMMPfam_IL10Ra-bind	superfamily_FN_III-like,HMMPfam_IL10Ra-bind	-	no_errors
INTS6	0	genome.wustl.edu	37	13	51950260	51950260	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	13	51950260	51950260	A	T	SNP	INTS6	NM_012141.2	human	genbank	58_37c	-1	reviewed	missense	c.1653	p.N551K	1.000	NULL	PatternScan_DEAD_ATP_HELICASE,superfamily_vWA-like	-	no_errors
LOC645146	0	genome.wustl.edu	37	1	148854020	148854020	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	1	148854020	148854020	G	T	SNP	LOC645146	XM_928177.2	human	genbank	58_37c	-1	model	missense	c.71	p.A24D	1.000	NULL	NULL	-	no_errors
MIR1324	0	genome.wustl.edu	37	3	75679993	75679993	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	3	75679993	75679993	C	T	SNP	MIR1324	ENST00000408868	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.789	-	-	-	no_errors
MT-CYB	0	genome.wustl.edu	37	MT	15498	15498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	MT	15498	15498	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	missense	c.752	p.G251D	NULL	superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MYH1	0	genome.wustl.edu	37	17	10415212	10415212	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	10415212	10415212	G	T	SNP	MYH1	NM_005963.3	human	genbank	58_37c	-1	reviewed	missense	c.1360	p.Q454K	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	12	124824721	124824722	-	GCCGCTGCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.5539_5538	p.1846in_frame_insSSG	1.000:0.999	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
PCDHB15	0	genome.wustl.edu	37	5	140626431	140626431	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	5	140626431	140626431	C	A	SNP	PCDHB15	NM_018935.2	human	genbank	58_37c	+1	reviewed	missense	c.1285	p.P429T	0.998	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RNF111	0	genome.wustl.edu	37	15	59350720	59350734	+	In_Frame_Del	DEL	GCAATAGTACCACTG	GCAATAGTACCACTG	-	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	GCAATAGTACCACTG	GCAATAGTACCACTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	15	59350720	59350734	GCAATAGTACCACTG	-	DEL	RNF111	NM_017610.6	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1337_1351	p.NSTTG447in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.997:0.997:0.963:0.978:0.998:1.000:1.000	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
SCGB1D4	0	genome.wustl.edu	37	11	62065069	62065069	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	11	62065069	62065069	G	A	SNP	SCGB1D4	NM_206998.1	human	genbank	58_37c	-1	provisional	silent	c.117	p.D39	0.000	superfamily_Uteroglobin-like	superfamily_Uteroglobin-like	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578278	7578279	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	7578278	7578279	-	A	INS	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.571_570	p.P190fs	0.997:0.935	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
U2AF1	0	genome.wustl.edu	37	21	44514780	44514780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	21	44514780	44514780	C	T	SNP	U2AF1	NM_001025203.1	human	genbank	58_37c	-1	reviewed	missense	c.467	p.R156H	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors
ZNF207	0	genome.wustl.edu	37	17	30690005	30690005	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	30690005	30690005	T	C	SNP	ZNF207	NM_001098507.1	human	genbank	58_37c	+1	validated	splice_site	c.670+2	e7+2	1.000	-	-	-	no_errors
