Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTSL1	0	genome.wustl.edu	37	9	18680349	18680350	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	9	18680349	18680350	-	G	INS	ADAMTSL1	NM_001040272.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1176_1177	p.I395fs	1.000:1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ADCY10	0	genome.wustl.edu	37	1	167830215	167830215	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	167830215	167830215	T	G	SNP	ADCY10	NM_018417.4	human	genbank	58_37c	-1	reviewed	missense	c.1703	p.D568A	0.582	NULL	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain,superfamily_TPR-like	-	no_errors
AP1S1	0	genome.wustl.edu	37	7	100802404	100802405	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	100802404	100802405	-	G	INS	AP1S1	NM_001283.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.356_357	p.D122fs	1.000:1.000	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like	HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_S,superfamily_SNARE-like	-	no_errors
ARFGEF1	0	genome.wustl.edu	37	8	68128855	68128856	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	68128855	68128856	-	G	INS	ARFGEF1	NM_006421.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.4656_4655	p.P1553fs	0.000:0.000	NULL	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors
ATG4A	0	genome.wustl.edu	37	X	107374543	107374543	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	107374543	107374543	C	G	SNP	ATG4A	NM_052936.2	human	genbank	58_37c	+1	reviewed	missense	c.247	p.Q83E	1.000	HMMPfam_Peptidase_C54	HMMPfam_Peptidase_C54	-	no_errors
AXL	0	genome.wustl.edu	37	19	41743932	41743933	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	41743932	41743933	-	C	INS	AXL	NM_021913.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.867_868	p.H291fs	0.982:1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_V-set,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
B4GALNT1	0	genome.wustl.edu	37	12	58025102	58025103	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	58025102	58025103	-	C	INS	B4GALNT1	NM_001478.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.264_263	p.L89fs	0.004:0.099	NULL	HMMPfam_Glycos_transf_2,superfamily_SSF53448	-	no_errors
BAX	0	genome.wustl.edu	37	19	49458970	49458971	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	49458970	49458971	-	G	INS	BAX	NM_004324.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.113_114	p.E41fs	0.585:0.588	superfamily_SSF56854	HMMPfam_Bcl-2,HMMSmart_BCL,PatternScan_BH1,PatternScan_BH2,PatternScan_BH3,superfamily_SSF56854	-	no_errors
BBS10	0	genome.wustl.edu	37	12	76740486	76740486	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	76740486	76740486	C	G	SNP	BBS10	NM_024685.3	human	genbank	58_37c	-1	reviewed	missense	c.1279	p.D427H	0.491	superfamily_GroEL-ATPase	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase	-	no_errors
BCHE	0	genome.wustl.edu	37	3	165548505	165548505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	165548505	165548505	C	A	SNP	BCHE	NM_000055.2	human	genbank	58_37c	-1	reviewed	missense	c.317	p.G106V	0.999	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,HMMPfam_AChE_tetra,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_SSF53474	-	no_errors
BCL9L	0	genome.wustl.edu	37	11	118770651	118770652	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	118770651	118770652	-	G	INS	BCL9L	NM_182557.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.3381_3380	p.P1128fs	0.988:0.996	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors
BRSK2	0	genome.wustl.edu	37	11	1477639	1477640	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	1477639	1477640	-	G	INS	BRSK2	NM_003957.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1730_1731	p.P580fs	0.998:0.882	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
C12orf72	0	genome.wustl.edu	37	12	31820847	31820847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	31820847	31820847	G	A	SNP	C12orf72	NM_001135863.1	human	genbank	58_37c	+1	validated	missense	c.712	p.E238K	0.965	NULL	HMMPfam_Methyltransf_16,superfamily_SSF53335	-	no_errors
C15orf39	0	genome.wustl.edu	37	15	75499803	75499804	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	75499803	75499804	-	C	INS	C15orf39	NM_015492.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1414_1415	p.A475fs	0.756:0.848	NULL	NULL	-	no_errors
C17orf47	0	genome.wustl.edu	37	17	56620396	56620396	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	56620396	56620396	G	A	SNP	C17orf47	NM_001038704.1	human	genbank	58_37c	-1	predicted	silent	c.1152	p.Y384	0.002	NULL	NULL	-	no_errors
C21orf58	0	genome.wustl.edu	37	21	47734733	47734734	+	Frame_Shift_Ins	INS	-	-	AT	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	21	47734733	47734734	-	AT	INS	C21orf58	ENST00000291691	human	ensembl	58_37c	-1	known	frame_shift_ins	c.506_505	p.A169fs	0.003:0.000	NULL	NULL	-	no_errors
C2orf65	0	genome.wustl.edu	37	2	74802647	74802647	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	74802647	74802647	C	T	SNP	C2orf65	NM_138804.3	human	genbank	58_37c	-1	predicted	missense	c.992	p.R331K	1.000	NULL	NULL	-	no_errors
C3	0	genome.wustl.edu	37	19	6697480	6697481	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	6697480	6697481	-	G	INS	C3	NM_000064.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.2671_2670	p.K890fs	0.022:0.014	NULL	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,superfamily_TIMP-like,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,superfamily_Anaphylotoxins (complement system),HMMPfam_NTR,HMMSmart_SM00643,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
C3orf32	0	genome.wustl.edu	37	3	8672537	8672537	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	8672537	8672537	T	G	SNP	C3orf32	NM_015931.1	human	genbank	58_37c	-1	predicted	missense	c.413	p.Q138P	1.000	NULL	NULL	-	no_errors
CCDC153	0	genome.wustl.edu	37	11	119061042	119061043	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	119061042	119061043	-	G	INS	CCDC153	NM_001145018.1	human	genbank	58_37c	-1	validated	frame_shift_ins	c.600_599	p.G201fs	1.000:1.000	NULL	NULL	-	no_errors
CNOT3	0	genome.wustl.edu	37	19	54649666	54649667	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	54649666	54649667	-	C	INS	CNOT3	NM_014516.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.724_725	p.P244fs	1.000:1.000	NULL	HMMPfam_Not3,HMMPfam_NOT2_3_5	-	no_errors
CNTNAP5	0	genome.wustl.edu	37	2	125671838	125671838	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	125671838	125671838	C	T	SNP	CNTNAP5	NM_130773.2	human	genbank	58_37c	+1	reviewed	silent	c.3894	p.S1298	1.000	NULL	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_LamG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C,HMMPfam_EGF,HMMSmart_EGF,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
COLQ	0	genome.wustl.edu	37	3	15518687	15518688	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	15518687	15518688	-	G	INS	COLQ	NM_005677.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.411_410	p.G138fs	0.973:1.000	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
CROCCL1	0	genome.wustl.edu	37	1	16945368	16945370	+	RNA	DEL	GAG	GAG	-	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	16945368	16945370	GAG	-	DEL	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.605:0.597:0.582	-	-	-	pseudogene
DAAM1	0	genome.wustl.edu	37	14	59730208	59730208	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	59730208	59730208	A	C	SNP	DAAM1	NM_014992.1	human	genbank	58_37c	+1	reviewed	missense	c.13	p.K5Q	1.000	NULL	HMMSmart_SM00498,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DFFB	0	genome.wustl.edu	37	1	3775374	3775375	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	3775374	3775375	-	T	INS	DFFB	NM_004402.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.207_208	p.V69fs	0.017:0.019	HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains	HMMPfam_CIDE-N,HMMSmart_SM00266,HMMPfam_DFF40,superfamily_His-Me finger endonucleases,superfamily_CAD  PB1 domains	-	no_errors
DMXL2	0	genome.wustl.edu	37	15	51791403	51791403	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	51791403	51791403	G	T	SNP	DMXL2	NM_015263.3	human	genbank	58_37c	-1	validated	missense	c.4018	p.L1340I	0.985	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
DNM3	0	genome.wustl.edu	37	1	172356293	172356293	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	172356293	172356293	C	T	SNP	DNM3	NM_015569.3	human	genbank	58_37c	+1	validated	silent	c.2079	p.S693	0.004	HMMPfam_GED,HMMSmart_GED	HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_DYNc,HMMPfam_PH,HMMSmart_PH,HMMPfam_GED,HMMSmart_GED,PatternScan_DYNAMIN,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
DPH2	0	genome.wustl.edu	37	1	44435938	44435938	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	44435938	44435938	G	T	SNP	DPH2	NM_001384.4	human	genbank	58_37c	+1	reviewed	nonsense	c.91	p.G31*	0.779	NULL	HMMPfam_Diphthamide_syn	-	no_errors
DUOX2	0	genome.wustl.edu	37	15	45387138	45387138	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	45387138	45387138	A	C	SNP	DUOX2	NM_014080.4	human	genbank	58_37c	-1	reviewed	missense	c.4391	p.M1464R	1.000	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	HMMPfam_An_peroxidase,HMMSmart_SM00054,superfamily_Heme-dependent peroxidases,HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
ECE1	0	genome.wustl.edu	37	1	21551856	21551856	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	21551856	21551856	C	T	SNP	ECE1	NM_001397.2	human	genbank	58_37c	-1	reviewed	missense	c.1927	p.E643K	0.995	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	"PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ELAVL3	0	genome.wustl.edu	37	19	11577604	11577605	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	11577604	11577605	-	C	INS	ELAVL3	NM_001420.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.48_47	p.A18fs	1.000:1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
ENSG00000228637	0	genome.wustl.edu	37	10	42396424	42396424	+	RNA	SNP	G	G	C	rs36154183	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	42396424	42396424	G	C	SNP	ENSG00000228637	ENST00000439345	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
EPC1	0	genome.wustl.edu	37	10	32576120	32576120	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	32576120	32576120	G	T	SNP	EPC1	NM_025209.2	human	genbank	58_37c	-1	provisional	missense	c.1058	p.P353H	1.000	NULL	HMMPfam_E_Pc_C,HMMPfam_EPL1	-	no_errors
EPHX4	0	genome.wustl.edu	37	1	92511121	92511122	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	92511121	92511122	-	G	INS	EPHX4	NM_173567.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.508_509	p.M173fs	1.000:1.000	HMMPfam_Abhydrolase_1,superfamily_SSF53474	HMMPfam_Abhydrolase_1,superfamily_SSF53474	-	no_errors
FAM135B	0	genome.wustl.edu	37	8	139164094	139164095	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	139164094	139164095	-	C	INS	FAM135B	NM_015912.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.2624_2623	p.T875fs	1.000:0.979	NULL	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases	-	no_errors
FAM21A	0	genome.wustl.edu	37	10	51853633	51853633	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	51853633	51853633	C	T	SNP	FAM21A	NM_001005751.1	human	genbank	58_37c	+1	validated	missense	c.1136	p.T379M	0.370	NULL	NULL	-	no_errors
FBXW10	0	genome.wustl.edu	37	17	18675985	18675985	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	18675985	18675985	A	G	SNP	FBXW10	NM_031456.3	human	genbank	58_37c	+1	validated	missense	c.2267	p.K756R	0.001	NULL	HMMSmart_SM00320,HMMPfam_F-box,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
GALNT7	0	genome.wustl.edu	37	4	174169248	174169248	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	4	174169248	174169248	T	A	SNP	GALNT7	NM_017423.2	human	genbank	58_37c	+1	reviewed	missense	c.244	p.L82I	1.000	NULL	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GATA1	0	genome.wustl.edu	37	X	48652249	48652249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	48652249	48652249	G	A	SNP	GATA1	NM_002049.3	human	genbank	58_37c	+1	reviewed	missense	c.920	p.R307H	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GBP7	0	genome.wustl.edu	37	1	89630532	89630532	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	89630532	89630532	A	T	SNP	GBP7	NM_207398.2	human	genbank	58_37c	-1	validated	missense	c.200	p.L67Q	0.173	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GOLGA6A	0	genome.wustl.edu	37	15	74364612	74364614	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	74364612	74364614	CCT	-	DEL	GOLGA6A	NM_001038640.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1540_1538	p.E513in_frame_del	0.397:0.486:0.950	NULL	NULL	-	no_errors
GPR75	0	genome.wustl.edu	37	2	54081037	54081037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	54081037	54081037	C	T	SNP	GPR75	NM_006794.2	human	genbank	58_37c	-1	validated	missense	c.857	p.R286H	0.988	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GPR83	0	genome.wustl.edu	37	11	94113625	94113625	+	Missense_Mutation	SNP	C	C	T	rs145628763	byFrequency	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	94113625	94113625	C	T	SNP	GPR83	NM_016540.3	human	genbank	58_37c	-1	validated	missense	c.962	p.R321H	0.862	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
HDAC4	0	genome.wustl.edu	37	2	240066378	240066378	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	240066378	240066378	G	A	SNP	HDAC4	NM_006037.3	human	genbank	58_37c	-1	reviewed	silent	c.766	p.L256	1.000	NULL	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	-	no_errors
IQCC	0	genome.wustl.edu	37	1	32673442	32673443	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	32673442	32673443	-	G	INS	IQCC	NM_018134.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1160_1161	p.P390fs	0.258:0.332	NULL	HMMPfam_IQ	-	no_errors
IRS4	0	genome.wustl.edu	37	X	107977802	107977803	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	107977802	107977803	-	C	INS	IRS4	NM_003604.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1773_1772	p.K592fs	0.031:0.016	NULL	HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729	-	no_errors
KERA	0	genome.wustl.edu	37	12	91445255	91445255	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	91445255	91445255	C	T	SNP	KERA	NM_007035.3	human	genbank	58_37c	-1	reviewed	silent	c.927	p.L309	0.075	superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
KHSRP	0	genome.wustl.edu	37	19	6414222	6414223	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	6414222	6414223	-	G	INS	KHSRP	ENST00000201886	human	ensembl	58_37c	-1	known	frame_shift_ins	c.2023_2022	p.T674fs	0.000:0.000	NULL	PatternScan_AA_TRNA_LIGASE_I,HMMSmart_SM00322,HMMPfam_DUF1897,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
KIAA0913	0	genome.wustl.edu	37	10	75560463	75560464	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	75560463	75560464	-	C	INS	KIAA0913	NM_015037.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.5092_5093	p.Y1701fs	1.000:1.000	NULL	HMMPfam_SWIM	-	no_errors
KIAA1731	0	genome.wustl.edu	37	11	93433116	93433117	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	93433116	93433117	-	C	INS	KIAA1731	NM_033395.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.5038_5039	p.S1683fs	0.000:0.000	NULL	NULL	-	no_errors
KIF5A	0	genome.wustl.edu	37	12	57975304	57975304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	57975304	57975304	C	T	SNP	KIF5A	NM_004984.2	human	genbank	58_37c	+1	reviewed	silent	c.2862	p.Y954	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_Prefoldin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLRC1	0	genome.wustl.edu	37	12	10603569	10603569	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	10603569	10603569	C	A	SNP	KLRC1	NM_002259.4	human	genbank	58_37c	-1	reviewed	missense	c.187	p.D63Y	0.888	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
LOC100288724	0	genome.wustl.edu	37	7	150311345	150311345	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	150311345	150311345	A	T	SNP	LOC100288724	XM_002342806.1	human	genbank	58_37c	-1	model	missense	c.517	p.C173S	0.982	NULL	HMMPfam_Ion_trans	-	no_start_codon
LOC653061	0	genome.wustl.edu	37	15	23606976	23606977	+	Splice_Site	DNP	GT	GT	CC	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	23606976	23606977	GT	CC	DNP	LOC653061	XM_002343326.1	human	genbank	58_37c	+1	model	splice_site	c.1191+1_1191+1	e12+1	0.017:0.012	-	-	-	no_errors
LPHN1	0	genome.wustl.edu	37	19	14263249	14263249	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	14263249	14263249	C	G	SNP	LPHN1	NM_001008701.2	human	genbank	58_37c	-1	reviewed	missense	c.3536	p.G1179A	1.000	HMMPfam_Latrophilin	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_SM00008,HMMPfam_OLF,HMMSmart_SM00284,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
LRP1	0	genome.wustl.edu	37	12	57574482	57574482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	57574482	57574482	G	A	SNP	LRP1	NM_002332.2	human	genbank	58_37c	+1	reviewed	missense	c.5419	p.E1807K	1.000	HMMSmart_SM00135,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
MAGED2	0	genome.wustl.edu	37	X	54836184	54836184	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	54836184	54836184	G	T	SNP	MAGED2	NM_014599.4	human	genbank	58_37c	+1	reviewed	silent	c.75	p.S25	0.000	NULL	HMMPfam_MAGE	-	no_errors
MAP1B	0	genome.wustl.edu	37	5	71495076	71495077	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	5	71495076	71495077	-	C	INS	MAP1B	NM_005909.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.5894_5895	p.E1968fs	0.926:0.932	HMMPfam_MAP1B_neuraxin	HMMPfam_MAP1B_neuraxin,PatternScan_MAP1B_NEURAXIN	-	no_errors
MAPRE3	0	genome.wustl.edu	37	2	27248516	27248517	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	27248516	27248517	-	C	INS	MAPRE3	NM_012326.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.535_536	p.C182fs	0.999:1.000	NULL	HMMPfam_CH,HMMPfam_EB1,superfamily_Calponin-homology domain CH-domain	-	no_errors
MED13	0	genome.wustl.edu	37	17	60023924	60023924	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	60023924	60023924	T	C	SNP	MED13	NM_005121.2	human	genbank	58_37c	-1	reviewed	missense	c.6430	p.T2144A	1.000	NULL	HMMPfam_TRAP_240kDa	-	no_errors
MUC17	0	genome.wustl.edu	37	7	100684923	100684923	+	Missense_Mutation	SNP	C	C	T	rs150801786	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	100684923	100684923	C	T	SNP	MUC17	NM_001040105.1	human	genbank	58_37c	+1	provisional	missense	c.10226	p.T3409M	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
MYOF	0	genome.wustl.edu	37	10	95093659	95093659	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	95093659	95093659	C	G	SNP	MYOF	NM_013451.3	human	genbank	58_37c	-1	reviewed	silent	c.4575	p.R1525	0.151	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors
NOVA1	0	genome.wustl.edu	37	14	26917796	26917796	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	26917796	26917796	G	T	SNP	NOVA1	NM_002515.2	human	genbank	58_37c	-1	reviewed	missense	c.893	p.A298E	1.000	NULL	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
NRXN2	0	genome.wustl.edu	37	11	64457918	64457919	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	64457918	64457919	-	C	INS	NRXN2	NM_015080.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.809_808	p.A270fs	1.000:1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
NUP93	0	genome.wustl.edu	37	16	56782199	56782199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	16	56782199	56782199	G	A	SNP	NUP93	NM_014669.3	human	genbank	58_37c	+1	validated	missense	c.40	p.E14K	1.000	NULL	HMMPfam_Nic96	-	no_errors
OR10G4	0	genome.wustl.edu	37	11	123886720	123886720	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	123886720	123886720	A	G	SNP	OR10G4	NM_001004462.1	human	genbank	58_37c	+1	provisional	missense	c.439	p.T147A	0.267	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR56A1	0	genome.wustl.edu	37	11	6048395	6048395	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	6048395	6048395	G	A	SNP	OR56A1	NM_001001917.2	human	genbank	58_37c	-1	validated	silent	c.540	p.V180	0.373	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5M1	0	genome.wustl.edu	37	11	56380428	56380428	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	56380428	56380428	A	G	SNP	OR5M1	NM_001004740.1	human	genbank	58_37c	-1	provisional	missense	c.551	p.L184P	0.006	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OTUD6B	0	genome.wustl.edu	37	8	92082559	92082559	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	92082559	92082559	C	T	SNP	OTUD6B	NM_016023.3	human	genbank	58_37c	+1	validated	missense	c.37	p.P13S	0.000	NULL	HMMPfam_OTU,superfamily_Cysteine proteinases	-	no_errors
OXER1	0	genome.wustl.edu	37	2	42990217	42990218	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	42990217	42990218	-	C	INS	OXER1	NM_148962.4	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1103_1102	p.A368fs	0.307:0.263	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PAK6	0	genome.wustl.edu	37	15	40566446	40566447	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	40566446	40566447	-	C	INS	PAK6	NM_001128628.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1847_1848	p.P619fs	1.000:1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_PBD,HMMSmart_SM00285,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PDZRN4	0	genome.wustl.edu	37	12	41967163	41967163	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	41967163	41967163	C	A	SNP	PDZRN4	NM_013377.3	human	genbank	58_37c	+1	validated	missense	c.1808	p.S603Y	0.998	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
PIK3CB	0	genome.wustl.edu	37	3	138413709	138413710	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	3	138413709	138413710	-	G	INS	PIK3CB	NM_006219.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.1811_1810	p.R604fs	0.981:0.240	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKP1	0	genome.wustl.edu	37	1	201291149	201291149	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	201291149	201291149	G	A	SNP	PKP1	NM_000299.2	human	genbank	58_37c	+1	reviewed	missense	c.1454	p.R485H	1.000	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
PLN	0	genome.wustl.edu	37	6	118880141	118880141	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	6	118880141	118880141	A	C	SNP	PLN	NM_002667.3	human	genbank	58_37c	+1	reviewed	missense	c.57	p.E19D	1.000	HMMPfam_Phospholamban	HMMPfam_Phospholamban	-	no_errors
PRDM14	0	genome.wustl.edu	37	8	70964468	70964468	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	70964468	70964468	C	G	SNP	PRDM14	NM_024504.2	human	genbank	58_37c	-1	validated	missense	c.1560	p.K520N	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_SET,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
PTCH2	0	genome.wustl.edu	37	1	45288193	45288194	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	45288193	45288194	-	G	INS	PTCH2	NM_003738.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.3506_3505	p.L1169fs	0.924:0.616	NULL	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
RAB40C	0	genome.wustl.edu	37	16	677579	677580	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	16	677579	677580	-	C	INS	RAB40C	NM_021168.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.803_804	p.Q271fs	1.000:1.000	NULL	HMMPfam_SOCS_box,HMMSmart_SM00253,HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RPLP0P2	0	genome.wustl.edu	37	11	61405178	61405179	+	RNA	INS	-	-	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	11	61405178	61405179	-	A	INS	RPLP0P2	NR_002775.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.974:0.975	-	-	-	pseudogene
RPS6KA5	0	genome.wustl.edu	37	14	91338524	91338524	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	14	91338524	91338524	G	C	SNP	RPS6KA5	NM_004755.2	human	genbank	58_37c	-1	validated	missense	c.2303	p.S768C	1.000	NULL	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SAE1	0	genome.wustl.edu	37	19	47673103	47673103	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	47673103	47673103	C	T	SNP	SAE1	ENST00000270225	human	ensembl	58_37c	+1	known	missense	c.656	p.A219V	0.998	superfamily_Activating enzymes of the ubiquitin-like proteins	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins	-	no_errors
SAP130	0	genome.wustl.edu	37	2	128712831	128712831	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	128712831	128712831	C	A	SNP	SAP130	NM_024545.3	human	genbank	58_37c	-1	validated	missense	c.2124	p.Q708H	1.000	NULL	NULL	-	no_errors
SDK2	0	genome.wustl.edu	37	17	71394281	71394282	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	17	71394281	71394282	-	G	INS	SDK2	NM_001144952.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.3247_3246	p.S1082fs	1.000:1.000	HMMPfam_fn3,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SEC16B	0	genome.wustl.edu	37	1	177927332	177927333	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	177927332	177927333	-	G	INS	SEC16B	NM_033127.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1300_1299	p.S433fs	0.033:0.033	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
SHISA9	0	genome.wustl.edu	37	16	13329129	13329129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	16	13329129	13329129	C	T	SNP	SHISA9	NM_001145204.2	human	genbank	58_37c	+1	validated	missense	c.1261	p.R421W	1.000	NULL	NULL	-	no_errors
SIGLEC7	0	genome.wustl.edu	37	19	51647820	51647820	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	51647820	51647820	C	A	SNP	SIGLEC7	NM_014385.2	human	genbank	58_37c	+1	validated	silent	c.591	p.T197	0.000	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
SIL1	0	genome.wustl.edu	37	5	138282853	138282854	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	5	138282853	138282854	GG	-	DEL	SIL1	NM_001037633.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1339_1338	p.F446fs	0.974:0.994	NULL	superfamily_ARM-type_fold	-	no_errors
SIL1	0	genome.wustl.edu	37	5	138282858	138282859	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	5	138282858	138282859	-	G	INS	SIL1	NM_001037633.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1334_1333	p.Y445fs	1.000:1.000	NULL	superfamily_ARM-type_fold	-	no_errors
SLC25A5	0	genome.wustl.edu	37	X	118603706	118603707	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	X	118603706	118603707	-	G	INS	SLC25A5	NM_001152.4	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.194_195	p.V67fs	1.000:1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
STAT6	0	genome.wustl.edu	37	12	57499093	57499094	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	12	57499093	57499094	-	G	INS	STAT6	NM_003153.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.842_841	p.Q281fs	1.000:1.000	superfamily_p53-like transcription factors,HMMPfam_STAT_bind	HMMPfam_SH2,HMMSmart_SM00252,superfamily_p53-like transcription factors,HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_STAT,superfamily_SH2 domain	-	no_errors
SUN1	0	genome.wustl.edu	37	7	891092	891092	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	891092	891092	G	T	SNP	SUN1	NM_001130965.2	human	genbank	58_37c	+1	reviewed	missense	c.730	p.A244S	0.000	HMMPfam_MRP	HMMPfam_Sad1_UNC,HMMPfam_MRP	-	no_errors
TEX15	0	genome.wustl.edu	37	8	30705420	30705420	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	8	30705420	30705420	G	C	SNP	TEX15	NM_031271.3	human	genbank	58_37c	-1	validated	missense	c.1114	p.Q372E	0.000	NULL	NULL	-	no_errors
TPRX1	0	genome.wustl.edu	37	19	48305639	48305650	+	In_Frame_Del	DEL	GGGCCTGGGATC	GGGCCTGGGATC	-	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	GGGCCTGGGATC	GGGCCTGGGATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	48305639	48305650	GGGCCTGGGATC	-	DEL	TPRX1	NM_198479.2	human	genbank	58_37c	-1	validated	in_frame_del	c.629_618	p.PGPI208in_frame_del	0.077:0.077:0.076:0.064:0.061:0.056:0.042:0.003:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
TPST2	0	genome.wustl.edu	37	22	26932298	26932299	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	22	26932298	26932299	-	G	INS	TPST2	NM_001008566.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.997_996	p.N332fs	1.000:0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TRIP12	0	genome.wustl.edu	37	2	230679028	230679028	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	230679028	230679028	T	A	SNP	TRIP12	NM_004238.1	human	genbank	58_37c	-1	provisional	missense	c.1601	p.Q534L	1.000	superfamily_ARM-type_fold	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WWE,superfamily_ARM-type_fold	-	no_errors
TRYX3	0	genome.wustl.edu	37	7	141955075	141955088	+	Frame_Shift_Del	DEL	AGATGCTTTTCATT	AGATGCTTTTCATT	-	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	AGATGCTTTTCATT	AGATGCTTTTCATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	7	141955075	141955088	AGATGCTTTTCATT	-	DEL	TRYX3	NM_001001317.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.236_223	p.N75fs	0.243:0.001:0.000:0.001:0.000:0.000:0.000:0.002:0.530:0.672:0.676:0.001:0.000:0.000	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TYK2	0	genome.wustl.edu	37	19	10463112	10463113	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	19	10463112	10463113	-	G	INS	TYK2	NM_003331.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.3316_3315	p.T1105fs	0.001:0.001	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550	-	no_errors
TYRO3	0	genome.wustl.edu	37	15	41862356	41862356	+	Splice_Site	SNP	T	T	C	rs149022093	byFrequency	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	15	41862356	41862356	T	C	SNP	TYRO3	NM_006293.3	human	genbank	58_37c	+1	reviewed	splice_site	c.1382+2	e10+2	1.000	-	-	-	no_errors
USP54	0	genome.wustl.edu	37	10	75290088	75290088	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	10	75290088	75290088	G	T	SNP	USP54	ENST00000424265	human	ensembl	58_37c	-1	known	missense	c.1033	p.P345T	0.002	NULL	superfamily_Cysteine proteinases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
WDTC1	0	genome.wustl.edu	37	1	27621107	27621108	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	1	27621107	27621108	-	G	INS	WDTC1	NM_015023.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.860_861	p.E290fs	1.000:1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMSmart_SM00028,HMMPfam_WD40,superfamily_TPR-like	-	no_errors
ZSWIM2	0	genome.wustl.edu	37	2	187702201	187702201	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1NC-01A-12W-A16L-09	TCGA-E9-A1NC-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ba4c398-b94b-49f8-bb88-9d0cb3347d2c	ebb77710-bd6f-435d-83c5-2600f9e422db	2	187702201	187702201	A	G	SNP	ZSWIM2	NM_182521.2	human	genbank	58_37c	-1	validated	missense	c.575	p.L192S	1.000	HMMSmart_RING,superfamily_SSF57850	HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_RING,HMMPfam_SWIM,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
