Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
A1BG	0	genome.wustl.edu	37	19	58862784	58862784	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	58862784	58862784	C	T	SNP	A1BG	NM_130786.3	human	genbank	58_37c	-1	reviewed	missense	c.883	p.A295T	0.915	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ADAMTS12	0	genome.wustl.edu	37	5	33614429	33614429	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	5	33614429	33614429	T	G	SNP	ADAMTS12	NM_030955.2	human	genbank	58_37c	-1	reviewed	missense	c.2441	p.K814T	1.000	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AGAP4	0	genome.wustl.edu	37	10	46342649	46342649	+	Silent	SNP	T	T	C	rs17357361	byFrequency	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	10	46342649	46342649	T	C	SNP	AGAP4	NM_133446.2	human	genbank	58_37c	-1	provisional	silent	c.147	p.V49	0.177	NULL	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_PH domain-like	-	no_errors
ANUBL1	0	genome.wustl.edu	37	10	46121562	46121562	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	10	46121562	46121562	A	G	SNP	ANUBL1	NM_001128324.1	human	genbank	58_37c	-1	validated	missense	c.1709	p.L570P	1.000	NULL	HMMPfam_zf-AN1,HMMSmart_SM00154,HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like	-	no_errors
AP1G1	0	genome.wustl.edu	37	16	71798295	71798295	+	Silent	SNP	C	C	T	rs147509201	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	16	71798295	71798295	C	T	SNP	AP1G1	NM_001030007.1	human	genbank	58_37c	-1	reviewed	silent	c.885	p.T295	0.035	HMMPfam_Adaptin_N,superfamily_ARM repeat	HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain,superfamily_ARM repeat	-	no_errors
C21orf91	0	genome.wustl.edu	37	21	19169225	19169225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	21	19169225	19169225	G	A	SNP	C21orf91	NM_001100420.1	human	genbank	58_37c	-1	validated	missense	c.338	p.S113F	0.998	HMMPfam_EURL	HMMPfam_EURL	-	no_errors
C8orf45	0	genome.wustl.edu	37	8	67796162	67796162	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	8	67796162	67796162	C	G	SNP	C8orf45	NM_173518.4	human	genbank	58_37c	+1	validated	missense	c.1006	p.R336G	0.000	HMMSmart_SM00350	HMMPfam_MCM,HMMSmart_SM00350	-	no_errors
C9orf43	0	genome.wustl.edu	37	9	116187646	116187648	+	In_Frame_Del	DEL	GCA	GCA	-	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	9	116187646	116187648	GCA	-	DEL	C9orf43	NM_152786.1	human	genbank	58_37c	+1	predicted	in_frame_del	c.888_890	p.Q300in_frame_del	0.211:0.207:0.211	NULL	NULL	-	no_errors
CD248	0	genome.wustl.edu	37	11	66083729	66083729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	11	66083729	66083729	C	T	SNP	CD248	NM_020404.2	human	genbank	58_37c	-1	validated	missense	c.770	p.R257H	1.000	HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_C-type lectin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
CNTN1	0	genome.wustl.edu	37	12	41419093	41419093	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	41419093	41419093	T	A	SNP	CNTN1	NM_001843.2	human	genbank	58_37c	+1	reviewed	missense	c.2665	p.C889S	0.993	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
CSMD3	0	genome.wustl.edu	37	8	113988224	113988224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	8	113988224	113988224	C	T	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	missense	c.1184	p.R395Q	1.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
CYP2A13	0	genome.wustl.edu	37	19	41596358	41596358	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	41596358	41596358	C	A	SNP	CYP2A13	NM_000766.3	human	genbank	58_37c	+1	reviewed	silent	c.543	p.V181	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DSC2	0	genome.wustl.edu	37	18	28667707	28667707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	18	28667707	28667707	C	T	SNP	DSC2	NM_024422.3	human	genbank	58_37c	-1	reviewed	missense	c.700	p.E234K	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
ELOF1	0	genome.wustl.edu	37	19	11664586	11664586	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	11664586	11664586	T	A	SNP	ELOF1	NM_032377.3	human	genbank	58_37c	-1	validated	missense	c.227	p.D76V	1.000	HMMPfam_Elf1	HMMPfam_Elf1	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2811	2811	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	MT	2811	2811	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	791	791	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	MT	791	791	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000229358	0	genome.wustl.edu	37	7	32674863	32674863	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	32674863	32674863	C	A	SNP	ENSG00000229358	ENST00000412778	human	ensembl	58_37c	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_coding_region:pseudogene
ENSG00000249665	0	genome.wustl.edu	37	8	86786618	86786618	+	RNA	SNP	T	T	C	rs143868202	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	8	86786618	86786618	T	C	SNP	ENSG00000249665	ENST00000503540	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors
EPB41L2	0	genome.wustl.edu	37	6	131184781	131184781	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	131184781	131184781	G	C	SNP	EPB41L2	NM_001431.3	human	genbank	58_37c	-1	validated	missense	c.2907	p.D969E	0.998	HMMPfam_4_1_CTD	HMMPfam_SAB,HMMPfam_4_1_CTD,HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
EYS	0	genome.wustl.edu	37	6	64487930	64487930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	64487930	64487930	C	T	SNP	EYS	NM_001142800.1	human	genbank	58_37c	-1	reviewed	missense	c.7867	p.G2623R	0.975	HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FAM157C	0	genome.wustl.edu	37	16	90168694	90168695	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	16	90168694	90168695	-	GCA	INS	FAM157C	XM_001714162.2	human	genbank	58_37c	+1	model	in_frame_ins	c.215_216	p.76in_frame_insQ	0.004:0.011	NULL	NULL	-	no_errors
FLRT2	0	genome.wustl.edu	37	14	86089456	86089456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	14	86089456	86089456	C	T	SNP	FLRT2	NM_013231.4	human	genbank	58_37c	+1	reviewed	missense	c.1598	p.T533M	0.980	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF52058	-	no_errors
GALNT2	0	genome.wustl.edu	37	1	230313974	230313974	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	1	230313974	230313974	A	G	SNP	GALNT2	NM_004481.3	human	genbank	58_37c	+1	reviewed	missense	c.137	p.N46S	1.000	NULL	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GCC1	0	genome.wustl.edu	37	7	127224901	127224901	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	127224901	127224901	A	C	SNP	GCC1	NM_024523.5	human	genbank	58_37c	-1	reviewed	silent	c.336	p.G112	0.995	NULL	HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
GLRA3	0	genome.wustl.edu	37	4	175598272	175598272	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	4	175598272	175598272	G	A	SNP	GLRA3	NM_006529.2	human	genbank	58_37c	-1	validated	missense	c.884	p.T295M	1.000	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GPRIN1	0	genome.wustl.edu	37	5	176026136	176026146	+	Frame_Shift_Del	DEL	CCTCCTTCCTC	CCTCCTTCCTC	-	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	CCTCCTTCCTC	CCTCCTTCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	5	176026136	176026146	CCTCCTTCCTC	-	DEL	GPRIN1	NM_052899.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.700_690	p.R231fs	0.001:0.001:0.018:0.050:0.065:0.536:0.053:0.031:0.027:0.000:0.000	NULL	NULL	-	no_errors
GUCY2C	0	genome.wustl.edu	37	12	14798208	14798208	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	14798208	14798208	G	A	SNP	GUCY2C	NM_004963.3	human	genbank	58_37c	-1	validated	silent	c.1752	p.F584	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
HDGFRP3	0	genome.wustl.edu	37	15	83826259	83826259	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	15	83826259	83826259	C	T	SNP	HDGFRP3	NM_016073.2	human	genbank	58_37c	-1	provisional	missense	c.367	p.E123K	1.000	superfamily_SSF63748	HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748	-	no_errors
HMOX1	0	genome.wustl.edu	37	22	35789489	35789489	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	22	35789489	35789489	G	A	SNP	HMOX1	NM_002133.1	human	genbank	58_37c	+1	reviewed	silent	c.765	p.G255	0.000	NULL	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like,PatternScan_HEME_OXYGENASE	-	no_errors
KCNH1	0	genome.wustl.edu	37	1	210948878	210948878	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	1	210948878	210948878	C	T	SNP	KCNH1	NM_172362.2	human	genbank	58_37c	-1	reviewed	missense	c.1924	p.D642N	1.000	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KCNH5	0	genome.wustl.edu	37	14	63174294	63174294	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	14	63174294	63174294	A	G	SNP	KCNH5	NM_139318.3	human	genbank	58_37c	-1	reviewed	missense	c.2899	p.C967R	0.800	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KCNK16	0	genome.wustl.edu	37	6	39284658	39284658	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	39284658	39284658	T	G	SNP	KCNK16	NM_001135105.1	human	genbank	58_37c	-1	reviewed	silent	c.561	p.P187	0.495	HMMPfam_Ion_trans_2,superfamily_SSF81324	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KIAA1468	0	genome.wustl.edu	37	18	59895751	59895751	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	18	59895751	59895751	A	T	SNP	KIAA1468	NM_020854.3	human	genbank	58_37c	+1	validated	silent	c.1368	p.S456	0.533	NULL	HMMPfam_HEAT,HMMSmart_SM00667,superfamily_ARM repeat	-	no_errors
KIAA1712	0	genome.wustl.edu	37	4	175224964	175224964	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	4	175224964	175224964	G	C	SNP	KIAA1712	NM_001145314.1	human	genbank	58_37c	+1	validated	silent	c.348	p.V116	0.987	NULL	NULL	-	no_errors
KLHL7	0	genome.wustl.edu	37	7	23213659	23213659	+	Silent	SNP	C	C	T	rs147111813	byFrequency	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	23213659	23213659	C	T	SNP	KLHL7	NM_001031710.2	human	genbank	58_37c	+1	reviewed	silent	c.1503	p.Y501	0.699	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LAS1L	0	genome.wustl.edu	37	X	64754390	64754390	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	X	64754390	64754390	G	A	SNP	LAS1L	NM_031206.4	human	genbank	58_37c	-1	validated	missense	c.206	p.A69V	0.998	HMMPfam_Las1	HMMPfam_Las1	-	no_errors
LEPREL2	0	genome.wustl.edu	37	12	6948564	6948564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	6948564	6948564	G	A	SNP	LEPREL2	ENST00000290510	human	ensembl	58_37c	+1	known	missense	c.2147	p.R716H	0.001	NULL	PatternScan_ER_TARGET,HMMSmart_SM00702	-	no_errors
LOC100132738	0	genome.wustl.edu	37	2	3184833	3184833	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	2	3184833	3184833	C	G	SNP	LOC100132738	XM_001714359.2	human	genbank	58_37c	+1	model	missense	c.1507	p.H503D	0.201	NULL	NULL	-	no_errors
LOC100288109	0	genome.wustl.edu	37	9	66458507	66458509	+	In_Frame_Del	DEL	CGC	CGC	-	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	CGC	CGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	9	66458507	66458509	CGC	-	DEL	LOC100288109	XM_002342922.1	human	genbank	58_37c	-1	model	in_frame_del	c.127_125	p.G42in_frame_del	0.007:0.008:0.009	NULL	NULL	-	no_errors
LOC100289574	0	genome.wustl.edu	37	16	32192665	32192665	+	Silent	SNP	C	C	T	rs139671788	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	16	32192665	32192665	C	T	SNP	LOC100289574	XM_002343438.1	human	genbank	58_37c	-1	model	silent	c.39	p.R13	0.997	NULL	NULL	-	no_errors
LOC388996	0	genome.wustl.edu	37	2	91777810	91777810	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	2	91777810	91777810	C	T	SNP	LOC388996	XR_017571.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.954	-	-	-	pseudogene
LOC645175	0	genome.wustl.edu	37	6	135219642	135219642	+	RNA	SNP	C	C	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	135219642	135219642	C	A	SNP	LOC645175	XR_017268.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC729375	0	genome.wustl.edu	37	3	129817600	129817600	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	129817600	129817600	A	C	SNP	LOC729375	NR_024252.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.058	-	-	-	pseudogene
LZTS2	0	genome.wustl.edu	37	10	102763412	102763412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	10	102763412	102763412	C	T	SNP	LZTS2	NM_032429.1	human	genbank	58_37c	+1	provisional	missense	c.557	p.P186L	1.000	NULL	HMMPfam_Fez1	-	no_errors
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MED12L	0	genome.wustl.edu	37	3	151134206	151134206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	151134206	151134206	C	T	SNP	MED12L	NM_053002.4	human	genbank	58_37c	+1	reviewed	missense	c.6299	p.P2100L	1.000	NULL	HMMPfam_Med12	-	no_errors
MGAM	0	genome.wustl.edu	37	7	141781840	141781840	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	141781840	141781840	A	C	SNP	MGAM	ENST00000475668	human	ensembl	58_37c	+1	known	splice_site	c.6006-2	e50-2	1.000	-	-	-	no_errors
MIR95	0	genome.wustl.edu	37	4	8007035	8007035	+	RNA	SNP	T	T	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	4	8007035	8007035	T	G	SNP	MIR95	ENST00000385072	human	ensembl	58_37c	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506597	195506597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	195506597	195506597	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11470	p.P3824S	0.025	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NOXO1	0	genome.wustl.edu	37	16	2029885	2029885	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	16	2029885	2029885	G	A	SNP	NOXO1	NM_172168.1	human	genbank	58_37c	-1	provisional	silent	c.621	p.N207	0.955	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_PX domain	-	no_errors
NR2C1	0	genome.wustl.edu	37	12	95445620	95445620	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	95445620	95445620	T	G	SNP	NR2C1	NM_003297.2	human	genbank	58_37c	-1	reviewed	missense	c.883	p.M295L	0.115	superfamily_Nuclear receptor ligand-binding domain	PatternScan_SUBTILASE_ASP,HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NUDT11	0	genome.wustl.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	X	51239296	51239309	TCCTCGAGGCAGCC	-	DEL	NUDT11	ENST00000375992	human	ensembl	58_37c	-1	known	frame_shift_del	c.1	p.M1fs	0.928	NULL	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX	-	no_errors
NUP210	0	genome.wustl.edu	37	3	13364872	13364872	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	13364872	13364872	A	C	SNP	NUP210	NM_024923.2	human	genbank	58_37c	-1	reviewed	missense	c.4705	p.F1569V	0.609	NULL	HMMPfam_Big_2,HMMSmart_SM00635,superfamily_Invasin/intimin cell-adhesion fragments	-	no_errors
OR11G2	0	genome.wustl.edu	37	14	20666089	20666089	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	14	20666089	20666089	G	A	SNP	OR11G2	NM_001005503.1	human	genbank	58_37c	+1	provisional	missense	c.595	p.V199I	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PHLDA1	0	genome.wustl.edu	37	12	76424938	76424940	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	12	76424938	76424940	TGC	-	DEL	PHLDA1	NM_007350.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.584_582	p.Q198in_frame_del	0.146:0.153:0.155	HMMSmart_PH,superfamily_SSF50729	HMMSmart_PH,superfamily_SSF50729	-	no_errors
PICK1	0	genome.wustl.edu	37	22	38461084	38461084	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	22	38461084	38461084	T	G	SNP	PICK1	NM_001039583.1	human	genbank	58_37c	+1	reviewed	missense	c.229	p.S77A	1.000	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_Arfaptin	-	no_errors
PKLR	0	genome.wustl.edu	37	1	155261573	155261573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	1	155261573	155261573	C	T	SNP	PKLR	NM_000298.5	human	genbank	58_37c	-1	reviewed	missense	c.1592	p.R531H	0.999	HMMPfam_PK_C,superfamily_PK C-terminal domain-like	superfamily_PK beta-barrel domain-like,HMMPfam_PK,HMMPfam_PK_C,superfamily_PK C-terminal domain-like,superfamily_Phosphoenolpyruvate/pyruvate domain,PatternScan_PYRUVATE_KINASE	-	no_errors
PLA2R1	0	genome.wustl.edu	37	2	160918804	160918804	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	2	160918804	160918804	A	C	SNP	PLA2R1	NM_007366.3	human	genbank	58_37c	-1	validated	splice_site	c.109+2	e1+2	1.000	-	-	-	no_errors
POLR1A	0	genome.wustl.edu	37	2	86292474	86292480	+	Frame_Shift_Del	DEL	GTCCTCG	GTCCTCG	-	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	GTCCTCG	GTCCTCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	2	86292474	86292480	GTCCTCG	-	DEL	POLR1A	NM_015425.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.1981_1975	p.R659fs	1.000:0.992:1.000:1.000:1.000:1.000:1.000	HMMPfam_RNA_pol_Rpb1_3,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
PRICKLE3	0	genome.wustl.edu	37	X	49034759	49034759	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	X	49034759	49034759	G	T	SNP	PRICKLE3	NM_006150.3	human	genbank	58_37c	-1	reviewed	nonsense	c.630	p.C210*	1.000	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PRKAR1A	0	genome.wustl.edu	37	17	66511664	66511664	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	17	66511664	66511664	C	T	SNP	PRKAR1A	NM_002734.3	human	genbank	58_37c	+1	reviewed	nonsense	c.124	p.R42*	0.544	HMMPfam_RIIa,HMMSmart_SM00394	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_RIIa,HMMSmart_SM00394,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like	-	no_errors
PRKCQ	0	genome.wustl.edu	37	10	6520982	6520982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	10	6520982	6520982	G	A	SNP	PRKCQ	NM_006257.2	human	genbank	58_37c	-1	reviewed	missense	c.1325	p.T442M	0.996	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
RBPJL	0	genome.wustl.edu	37	20	43940867	43940867	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	20	43940867	43940867	G	A	SNP	RBPJL	NM_014276.2	human	genbank	58_37c	+1	reviewed	missense	c.451	p.G151S	0.999	superfamily_P53_like_DNA_bnd,HMMPfam_LAG1-DNAbind	HMMPfam_TIG,superfamily_P53_like_DNA_bnd,superfamily_Ig_E-set,HMMPfam_Beta-trefoil,superfamily_Beta-trefoil,HMMPfam_LAG1-DNAbind	-	no_errors
RINT1	0	genome.wustl.edu	37	7	105205897	105205897	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	105205897	105205897	A	G	SNP	RINT1	NM_021930.4	human	genbank	58_37c	+1	validated	missense	c.2060	p.Y687C	1.000	HMMPfam_RINT1_TIP1	HMMPfam_RINT1_TIP1	-	no_errors
RNF182	0	genome.wustl.edu	37	6	13977576	13977576	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	13977576	13977576	G	A	SNP	RNF182	NM_152737.3	human	genbank	58_37c	+1	validated	missense	c.226	p.D76N	0.995	NULL	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
SLC10A1	0	genome.wustl.edu	37	14	70245985	70245985	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	14	70245985	70245985	T	G	SNP	SLC10A1	NM_003049.3	human	genbank	58_37c	-1	validated	silent	c.660	p.P220	0.038	NULL	HMMPfam_SBF	-	no_errors
SLC12A5	0	genome.wustl.edu	37	20	44680441	44680441	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	20	44680441	44680441	C	G	SNP	SLC12A5	NM_001134771.1	human	genbank	58_37c	+1	reviewed	missense	c.2378	p.T793S	0.999	NULL	HMMPfam_AA_permease	-	no_errors
SLC22A14	0	genome.wustl.edu	37	3	38357875	38357875	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	38357875	38357875	A	T	SNP	SLC22A14	NM_004803.3	human	genbank	58_37c	+1	validated	silent	c.1593	p.T531	0.000	superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SPINK8	0	genome.wustl.edu	37	3	48351420	48351420	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	3	48351420	48351420	T	C	SNP	SPINK8	NM_001080525.1	human	genbank	58_37c	-1	provisional	missense	c.256	p.I86V	0.033	HMMPfam_Kazal_1,HMMSmart_KAZAL,superfamily_SSF100895	HMMPfam_Kazal_1,HMMSmart_KAZAL,superfamily_SSF100895	-	no_errors
TCN1	0	genome.wustl.edu	37	11	59626616	59626616	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	11	59626616	59626616	C	G	SNP	TCN1	NM_001062.3	human	genbank	58_37c	-1	reviewed	missense	c.681	p.K227N	0.239	HMMPfam_Cobalamin_bind	HMMPfam_Cobalamin_bind,PatternScan_COBALAMIN_BINDING,PatternScan_ABC_TRANSPORTER_1	-	no_errors
TFEB	0	genome.wustl.edu	37	6	41658742	41658742	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	6	41658742	41658742	C	T	SNP	TFEB	NM_007162.2	human	genbank	58_37c	-1	validated	silent	c.210	p.L70	0.968	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
THSD7B	0	genome.wustl.edu	37	2	137928463	137928463	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	2	137928463	137928463	G	C	SNP	THSD7B	NM_001080427.1	human	genbank	58_37c	+1	provisional	missense	c.1585	p.G529R	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	-	no_errors
TMEM168	0	genome.wustl.edu	37	7	112424725	112424725	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	7	112424725	112424725	T	C	SNP	TMEM168	NM_022484.4	human	genbank	58_37c	-1	validated	silent	c.156	p.L52	0.921	NULL	NULL	-	no_errors
TMLHE	0	genome.wustl.edu	37	X	154743676	154743676	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	X	154743676	154743676	C	T	SNP	TMLHE	NM_018196.3	human	genbank	58_37c	-1	reviewed	silent	c.609	p.E203	0.976	HMMPfam_TauD,superfamily_Clavaminate synthase-like	HMMPfam_TauD,superfamily_Clavaminate synthase-like	-	no_errors
ZFHX4	0	genome.wustl.edu	37	8	77765416	77765416	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	8	77765416	77765416	C	A	SNP	ZFHX4	NM_024721.4	human	genbank	58_37c	+1	validated	missense	c.6124	p.Q2042K	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF592	0	genome.wustl.edu	37	15	85334047	85334047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	15	85334047	85334047	C	T	SNP	ZNF592	NM_014630.2	human	genbank	58_37c	+1	validated	missense	c.2332	p.R778C	1.000	HMMSmart_ZnF_C2H2	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF677	0	genome.wustl.edu	37	19	53740447	53740447	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	53740447	53740447	T	A	SNP	ZNF677	NM_182609.2	human	genbank	58_37c	-1	provisional	silent	c.1533	p.G511	0.987	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF71	0	genome.wustl.edu	37	19	57132793	57132793	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	57132793	57132793	G	C	SNP	ZNF71	NM_021216.4	human	genbank	58_37c	+1	validated	missense	c.138	p.E46D	0.004	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF773	0	genome.wustl.edu	37	19	58017951	58017951	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A22B-01A-11D-A159-09	TCGA-E9-A22B-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e46a5d19-2dd7-4c34-8fff-6276278c58b3	f948182a-f814-4e3c-83ee-82b78aa423c1	19	58017951	58017951	T	C	SNP	ZNF773	NM_198542.1	human	genbank	58_37c	+1	provisional	missense	c.488	p.L163P	0.022	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
