Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGBL2	0	genome.wustl.edu	37	11	47735870	47735870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	47735870	47735870	C	T	SNP	AGBL2	NM_024783.2	human	genbank	58_37c	-1	validated	missense	c.63	p.M21I	0.997	NULL	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases	-	no_errors
ALX4	0	genome.wustl.edu	37	11	44289064	44289064	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	44289064	44289064	G	A	SNP	ALX4	NM_021926.3	human	genbank	58_37c	-1	reviewed	nonsense	c.886	p.R296*	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_OAR,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
ARID3B	0	genome.wustl.edu	37	15	74836663	74836663	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	15	74836663	74836663	G	A	SNP	ARID3B	NM_006465.2	human	genbank	58_37c	+1	reviewed	missense	c.386	p.R129H	0.545	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
ATP11C	0	genome.wustl.edu	37	X	138825729	138825729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	X	138825729	138825729	C	T	SNP	ATP11C	NM_173694.4	human	genbank	58_37c	-1	validated	missense	c.3028	p.V1010I	1.000	NULL	HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
BCL6B	0	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	6928019	6928020	-	CAG	INS	BCL6B	NM_181844.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.701_702	p.238in_frame_insS	0.939:0.528	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BDH2	0	genome.wustl.edu	37	4	104013865	104013865	+	Silent	SNP	A	A	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	4	104013865	104013865	A	T	SNP	BDH2	ENST00000506521	human	ensembl	58_37c	-1	known	silent	c.162	p.V54	0.009	NULL	superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
C19orf10	0	genome.wustl.edu	37	19	4659991	4659991	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	4659991	4659991	T	G	SNP	C19orf10	NM_019107.3	human	genbank	58_37c	-1	validated	missense	c.394	p.S132R	0.003	HMMPfam_UPF0556	HMMPfam_UPF0556	-	no_errors
C5orf52	0	genome.wustl.edu	37	5	157106864	157106864	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	5	157106864	157106864	A	G	SNP	C5orf52	NM_001145132.1	human	genbank	58_37c	+1	validated	missense	c.337	p.K113E	0.946	NULL	NULL	-	no_errors
CACNA1C	0	genome.wustl.edu	37	12	2675590	2675590	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	12	2675590	2675590	G	A	SNP	CACNA1C	NM_199460.2	human	genbank	58_37c	+1	reviewed	missense	c.1511	p.R504H	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CCDC151	0	genome.wustl.edu	37	19	11537373	11537373	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	11537373	11537373	C	G	SNP	CCDC151	NM_145045.4	human	genbank	58_37c	-1	validated	missense	c.733	p.E245Q	1.000	NULL	NULL	-	no_errors
CDC14C	0	genome.wustl.edu	37	7	48965473	48965473	+	RNA	SNP	G	G	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	48965473	48965473	G	T	SNP	CDC14C	NR_003595.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.999	-	-	-	pseudogene
COL16A1	0	genome.wustl.edu	37	1	32120447	32120447	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	32120447	32120447	T	C	SNP	COL16A1	NM_001856.3	human	genbank	58_37c	-1	reviewed	missense	c.4303	p.N1435D	1.000	NULL	HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
CTSA	0	genome.wustl.edu	37	20	44520238	44520240	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	44520238	44520240	CTG	-	DEL	CTSA	NM_000308.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.85_87	p.L32in_frame_del	0.155:0.311:0.361	NULL	HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS,superfamily_alpha/beta-Hydrolases	-	no_errors
CTSZ	0	genome.wustl.edu	37	20	57570749	57570749	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	57570749	57570749	G	C	SNP	CTSZ	NM_001336.3	human	genbank	58_37c	-1	reviewed	missense	c.867	p.N289K	1.000	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases	-	no_errors
CUL9	0	genome.wustl.edu	37	6	43167709	43167709	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	6	43167709	43167709	A	G	SNP	CUL9	NM_015089.2	human	genbank	58_37c	+1	validated	missense	c.3199	p.M1067V	0.000	superfamily_ARM repeat	"HMMPfam_Cullin,HMMPfam_IBR,HMMSmart_SM00647,HMMPfam_APC10,superfamily_Galactose-binding domain-like,superfamily_ARM repeat,PatternScan_CULLIN_1,superfamily_Cullin homology domain,PatternScan_ZF_RING_1,PatternScan_CYTOCHROME_P450,superfamily_""Winged helix"" DNA-binding domain,superfamily_RING/U-box"	-	no_errors
DENND1B	0	genome.wustl.edu	37	1	197515103	197515103	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	197515103	197515103	G	A	SNP	DENND1B	ENST00000416626	human	ensembl	58_37c	-1	known	missense	c.1046	p.S349L	1.000	NULL	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
DENND4B	0	genome.wustl.edu	37	1	153907279	153907287	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	CTGCTGCTG	CTGCTGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	153907279	153907287	CTGCTGCTG	-	DEL	DENND4B	NM_014856.2	human	genbank	58_37c	-1	validated	in_frame_del	c.2730_2722	p.QQQ908in_frame_del	0.792:0.815:0.846:0.964:0.974:0.990:0.990:0.986:0.989	NULL	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
DERL1	0	genome.wustl.edu	37	8	124042882	124042882	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	8	124042882	124042882	T	C	SNP	DERL1	NM_024295.4	human	genbank	58_37c	-1	validated	silent	c.228	p.L76	0.995	HMMPfam_DER1	HMMPfam_DER1	-	no_errors
DGKZ	0	genome.wustl.edu	37	11	46398099	46398099	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	46398099	46398099	G	A	SNP	DGKZ	NM_001105540.1	human	genbank	58_37c	+1	reviewed	silent	c.2751	p.R917	1.000	NULL	HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_C1_1,HMMSmart_SM00109,superfamily_Cysteine-rich domain	-	no_errors
DHCR24	0	genome.wustl.edu	37	1	55349418	55349418	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	55349418	55349418	T	G	SNP	DHCR24	NM_014762.3	human	genbank	58_37c	-1	reviewed	missense	c.260	p.K87T	1.000	superfamily_FAD-binding_2	HMMPfam_FAD_binding_4,superfamily_FAD-binding_2	-	no_errors
DIAPH1	0	genome.wustl.edu	37	5	140953564	140953566	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	5	140953564	140953566	GGA	-	DEL	DIAPH1	NM_005219.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1853_1851	p.P620in_frame_del	0.010:0.008:0.007	HMMPfam_Drf_FH1	HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DSCAML1	0	genome.wustl.edu	37	11	117302396	117302396	+	Missense_Mutation	SNP	C	C	T	rs151098218	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	117302396	117302396	C	T	SNP	DSCAML1	NM_020693.2	human	genbank	58_37c	-1	provisional	missense	c.5408	p.R1803Q	1.000	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DTNB	0	genome.wustl.edu	37	2	25861883	25861883	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	25861883	25861883	G	A	SNP	DTNB	ENST00000356599	human	ensembl	58_37c	-1	known	nonsense	c.148	p.Q50*	1.000	NULL	HMMPfam_efhand_1,superfamily_EF-hand	-	no_errors
ENSG00000245434	0	genome.wustl.edu	37	17	62075994	62075995	+	RNA	INS	-	-	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	62075994	62075995	-	A	INS	ENSG00000245434	ENST00000501158	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors
FAM21A	0	genome.wustl.edu	37	10	51853633	51853633	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	10	51853633	51853633	C	T	SNP	FAM21A	NM_001005751.1	human	genbank	58_37c	+1	validated	missense	c.1136	p.T379M	0.370	NULL	NULL	-	no_errors
FAM48B1	0	genome.wustl.edu	37	X	24382374	24382376	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	X	24382374	24382376	TGC	-	DEL	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	in_frame_del	c.1497_1499	p.A503in_frame_del	0.007:0.004:0.003	NULL	NULL	-	no_errors
FBN3	0	genome.wustl.edu	37	19	8152732	8152732	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	8152732	8152732	C	T	SNP	FBN3	NM_032447.3	human	genbank	58_37c	-1	reviewed	missense	c.6596	p.R2199Q	1.000	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FBXW10	0	genome.wustl.edu	37	17	18682066	18682066	+	Silent	SNP	T	T	C	rs143308813	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	18682066	18682066	T	C	SNP	FBXW10	NM_031456.3	human	genbank	58_37c	+1	validated	silent	c.2611	p.L871	0.000	NULL	HMMSmart_SM00320,HMMPfam_F-box,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40366247	40366247	+	Missense_Mutation	SNP	C	C	G	rs62106923	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	40366247	40366247	C	G	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	missense	c.13987	p.G4663R	0.017	HMMPfam_C8	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
FLJ36000	0	genome.wustl.edu	37	17	21904092	21904092	+	RNA	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	21904092	21904092	C	T	SNP	FLJ36000	NR_027084.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.042	-	-	-	no_errors
FLJ36000	0	genome.wustl.edu	37	17	21904161	21904161	+	RNA	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	21904161	21904161	C	T	SNP	FLJ36000	NR_027084.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.006	-	-	-	no_errors
FMN2	0	genome.wustl.edu	37	1	240371034	240371034	+	Silent	SNP	A	A	C	rs150102515	byFrequency	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	240371034	240371034	A	C	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	silent	c.2922	p.G974	0.000	HMMSmart_FH2,HMMPfam_Drf_FH1	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
GALNT11	0	genome.wustl.edu	37	7	151810418	151810418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	151810418	151810418	G	A	SNP	GALNT11	NM_022087.2	human	genbank	58_37c	+1	validated	missense	c.1168	p.E390K	1.000	superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GXYLT1	0	genome.wustl.edu	37	12	42491739	42491739	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	12	42491739	42491739	A	C	SNP	GXYLT1	NM_173601.1	human	genbank	58_37c	-1	validated	missense	c.961	p.L321V	0.356	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
IL1R2	0	genome.wustl.edu	37	2	102632478	102632478	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	102632478	102632478	C	T	SNP	IL1R2	NM_004633.3	human	genbank	58_37c	+1	reviewed	missense	c.478	p.R160C	0.001	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
KIAA0913	0	genome.wustl.edu	37	10	75557625	75557625	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	10	75557625	75557625	C	T	SNP	KIAA0913	ENST00000412198	human	ensembl	58_37c	+1	known	nonsense	c.1558	p.R520*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC100287759	0	genome.wustl.edu	37	9	66454789	66454789	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	9	66454789	66454789	T	C	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	missense	c.166	p.T56A	0.047	NULL	NULL	-	no_errors
LOC645453	0	genome.wustl.edu	37	15	50087833	50087834	+	RNA	INS	-	-	AGTCCT	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	15	50087833	50087834	-	AGTCCT	INS	LOC645453	XR_017437.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000:0.002	-	-	-	pseudogene
LOC649330	0	genome.wustl.edu	37	1	13507	13507	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	13507	13507	G	A	SNP	LOC649330	XM_002346278.1	human	genbank	58_37c	-1	model	nonsense	c.397	p.Q133*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
MAGI1	0	genome.wustl.edu	37	3	65425560	65425561	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	3	65425560	65425561	-	CTG	INS	MAGI1	NM_001033057.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1264_1263	p.421in_frame_insQ	0.208:0.001	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MAML3	0	genome.wustl.edu	37	4	140811064	140811066	+	Frame_Shift_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	4	140811064	140811066	TGC	-	DEL	MAML3	ENST00000398940	human	ensembl	58_37c	-1	known	frame_shift_del	c.110_109	p.Q37fs	1.000:1.000	NULL	NULL	-	no_errors
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MAZ	0	genome.wustl.edu	37	16	29821421	29821435	+	In_Frame_Del	DEL	GCGGCGGCAGCGGCA	GCGGCGGCAGCGGCA	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	GCGGCGGCAGCGGCA	GCGGCGGCAGCGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	16	29821421	29821435	GCGGCGGCAGCGGCA	-	DEL	MAZ	NM_002383.2	human	genbank	58_37c	+1	validated	in_frame_del	c.1303_1317	p.AAAAA438in_frame_del	1.000:1.000:0.992:0.991:0.930:0.121:0.344:0.341:0.019:0.113:0.122:0.038:0.077:0.083:0.008	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MLL	0	genome.wustl.edu	37	11	118359392	118359398	+	Frame_Shift_Del	DEL	CCTCTGG	CCTCTGG	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	CCTCTGG	CCTCTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	118359392	118359398	CCTCTGG	-	DEL	MLL	NM_005933.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.4396_4402	p.P1466fs	1.000:1.000:0.732:0.996:0.999:1.000:1.000	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	PatternScan_HMGI_Y,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,PatternScan_RECR,HMMPfam_AT_hook,PatternScan_EF_HAND_1,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MLL	0	genome.wustl.edu	37	11	118359400	118359417	+	In_Frame_Del	DEL	GGACCAGCTGGAAAATTG	GGACCAGCTGGAAAATTG	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	GGACCAGCTGGAAAATTG	GGACCAGCTGGAAAATTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	11	118359400	118359417	GGACCAGCTGGAAAATTG	-	DEL	MLL	NM_005933.2	human	genbank	58_37c	+1	validated	in_frame_del	c.4404_4421	p.DQLENW1469in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:0.998:1.000:1.000	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	PatternScan_HMGI_Y,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,PatternScan_RECR,HMMPfam_AT_hook,PatternScan_EF_HAND_1,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MYO15A	0	genome.wustl.edu	37	17	18046135	18046135	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	18046135	18046135	G	A	SNP	MYO15A	NM_016239.3	human	genbank	58_37c	+1	reviewed	missense	c.5891	p.S1964N	0.877	HMMSmart_SM00015	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NAPA	0	genome.wustl.edu	37	19	48018149	48018149	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	48018149	48018149	C	A	SNP	NAPA	NM_003827.2	human	genbank	58_37c	-1	reviewed	missense	c.49	p.A17S	1.000	superfamily_TPR-like	HMMPfam_NSF,superfamily_TPR-like	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16902939	16902939	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	16902939	16902939	G	C	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.1942	p.L648V	0.007	NULL	HMMPfam_DUF1220	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279807	46279809	+	In_Frame_Del	DEL	ATG	ATG	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	46279807	46279809	ATG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3733_3735	p.M1247in_frame_del	0.327:0.997:1.000	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NDUFB5	0	genome.wustl.edu	37	3	179322623	179322623	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	3	179322623	179322623	T	G	SNP	NDUFB5	NM_002492.2	human	genbank	58_37c	+1	reviewed	missense	c.20	p.L7W	0.899	HMMPfam_NDUF_B5	HMMPfam_NDUF_B5	-	no_errors
NGEF	0	genome.wustl.edu	37	2	233759478	233759478	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	233759478	233759478	G	T	SNP	NGEF	NM_019850.2	human	genbank	58_37c	-1	validated	missense	c.977	p.A326D	0.998	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
NLGN2	0	genome.wustl.edu	37	17	7320448	7320448	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	7320448	7320448	C	T	SNP	NLGN2	NM_020795.2	human	genbank	58_37c	+1	reviewed	missense	c.1838	p.T613M	0.981	NULL	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_SSF53474	-	no_errors
NOSIP	0	genome.wustl.edu	37	19	50060466	50060466	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	50060466	50060466	T	G	SNP	NOSIP	NM_015953.3	human	genbank	58_37c	-1	provisional	missense	c.299	p.K100T	0.800	superfamily_SSF57850	HMMPfam_U-box,superfamily_SSF57850	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ODZ3	0	genome.wustl.edu	37	4	183721007	183721007	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	4	183721007	183721007	G	A	SNP	ODZ3	NM_001080477.1	human	genbank	58_37c	+1	provisional	missense	c.7603	p.E2535K	1.000	NULL	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,superfamily_CarboxypepD_reg,superfamily_ConA_like_lec_gl,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196,superfamily_SSF63829	-	no_errors
OTX2	0	genome.wustl.edu	37	14	57268782	57268782	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	14	57268782	57268782	G	A	SNP	OTX2	NM_021728.2	human	genbank	58_37c	-1	reviewed	nonsense	c.565	p.Q189*	1.000	HMMPfam_TF_Otx	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,HMMPfam_TF_Otx,PatternScan_HOMEOBOX_1	-	no_errors
PATZ1	0	genome.wustl.edu	37	22	31731814	31731814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	22	31731814	31731814	C	T	SNP	PATZ1	NM_014323.2	human	genbank	58_37c	-1	reviewed	silent	c.1371	p.L457	1.000	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,PatternScan_HMGI_Y,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,HMMPfam_AT_hook,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PCDH12	0	genome.wustl.edu	37	5	141324955	141324956	+	In_Frame_Ins	INS	-	-	CTGCTGCTG	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	5	141324955	141324956	-	CTGCTGCTG	INS	PCDH12	NM_016580.2	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.3546_3545	p.1182in_frame_insSSS	0.176:0.994	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PIK3AP1	0	genome.wustl.edu	37	10	98408467	98408467	+	Silent	SNP	G	G	A	rs138239158	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	10	98408467	98408467	G	A	SNP	PIK3AP1	NM_152309.2	human	genbank	58_37c	-1	validated	silent	c.1134	p.I378	0.637	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat	-	no_errors
POLR3A	0	genome.wustl.edu	37	10	79784451	79784451	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	10	79784451	79784451	C	T	SNP	POLR3A	NM_007055.3	human	genbank	58_37c	-1	validated	silent	c.501	p.K167	1.000	HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_RPOLA_N,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_SSF64484	-	no_errors
PRPF40A	0	genome.wustl.edu	37	2	153515699	153515699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	153515699	153515699	G	A	SNP	PRPF40A	NM_017892.3	human	genbank	58_37c	-1	validated	missense	c.2414	p.S805L	1.000	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain	-	no_errors
PTK6	0	genome.wustl.edu	37	20	62163955	62163955	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	62163955	62163955	G	A	SNP	PTK6	NM_005975.2	human	genbank	58_37c	-1	reviewed	silent	c.756	p.A252	0.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF55550	-	no_errors
PTPRN2	0	genome.wustl.edu	37	7	158109540	158109540	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	158109540	158109540	C	T	SNP	PTPRN2	NM_002847.3	human	genbank	58_37c	-1	reviewed	missense	c.248	p.R83H	0.130	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SLC12A5	0	genome.wustl.edu	37	20	44673645	44673645	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	20	44673645	44673645	C	G	SNP	SLC12A5	NM_001134771.1	human	genbank	58_37c	+1	reviewed	missense	c.1504	p.L502V	0.995	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC26A11	0	genome.wustl.edu	37	17	78210729	78210729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	78210729	78210729	C	T	SNP	SLC26A11	NM_173626.3	human	genbank	58_37c	+1	reviewed	missense	c.739	p.R247C	1.000	HMMPfam_Sulfate_transp	HMMPfam_STAS,superfamily_STAS,HMMPfam_Sulfate_transp,PatternScan_SLC26A	-	no_errors
TMBIM1	0	genome.wustl.edu	37	2	219142384	219142384	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	219142384	219142384	T	C	SNP	TMBIM1	NM_022152.4	human	genbank	58_37c	-1	validated	missense	c.523	p.M175V	0.571	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577509	7577509	+	Nonsense_Mutation	SNP	C	C	A	rs121912652	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	7577509	7577509	C	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.772	p.E258*	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRAF3IP1	0	genome.wustl.edu	37	2	239233967	239233967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	2	239233967	239233967	C	A	SNP	TRAF3IP1	NM_015650.3	human	genbank	58_37c	+1	validated	missense	c.144	p.F48L	0.936	NULL	HMMPfam_MIP-T3	-	no_errors
TRIM32	0	genome.wustl.edu	37	9	119460255	119460255	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	9	119460255	119460255	C	G	SNP	TRIM32	NM_001099679.1	human	genbank	58_37c	+1	reviewed	missense	c.234	p.D78E	1.000	NULL	HMMSmart_BBOX,HMMPfam_NHL,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF101898,superfamily_SSF57850	-	no_errors
TRPV3	0	genome.wustl.edu	37	17	3458079	3458079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	3458079	3458079	G	A	SNP	TRPV3	NM_145068.2	human	genbank	58_37c	-1	reviewed	silent	c.66	p.N22	0.782	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans	-	no_errors
VEZF1	0	genome.wustl.edu	37	17	56056604	56056605	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	56056604	56056605	-	TGC	INS	VEZF1	NM_007146.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.1047_1046	p.353in_frame_insQ	0.934:0.940	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
WSB1	0	genome.wustl.edu	37	17	25637155	25637155	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	17	25637155	25637155	C	A	SNP	WSB1	NM_015626.8	human	genbank	58_37c	+1	reviewed	missense	c.953	p.S318Y	0.985	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMPfam_SOCS_box,HMMSmart_SM00253,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZAN	0	genome.wustl.edu	37	7	100350499	100350499	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	7	100350499	100350499	C	T	SNP	ZAN	NM_003386.1	human	genbank	58_37c	+1	reviewed	missense	c.2771	p.T924M	0.030	NULL	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZCCHC11	0	genome.wustl.edu	37	1	52911474	52911474	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	1	52911474	52911474	G	A	SNP	ZCCHC11	NM_001009881.1	human	genbank	58_37c	-1	validated	silent	c.3807	p.L1269	0.995	NULL	HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_PAP_assoc,HMMPfam_NTP_transf_2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Retrovirus zinc finger-like domains,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
ZNF384	0	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	12	6777070	6777072	TGC	-	DEL	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1544_1542	p.Q516in_frame_del	0.291:0.350:0.379	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF434	0	genome.wustl.edu	37	16	3434862	3434862	+	Silent	SNP	G	G	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	16	3434862	3434862	G	C	SNP	ZNF434	NM_017810.2	human	genbank	58_37c	-1	provisional	silent	c.195	p.L65	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF528	0	genome.wustl.edu	37	19	52909856	52909856	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	52909856	52909856	C	T	SNP	ZNF528	NM_032423.2	human	genbank	58_37c	+1	validated	silent	c.231	p.N77	0.000	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF611	0	genome.wustl.edu	37	19	53209818	53209818	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1OZ-01A-11D-A142-09	TCGA-EW-A1OZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a73152be-2293-403d-940b-74ac05810808	86f8904b-36e9-4dbf-9cd4-dafefc783b32	19	53209818	53209818	G	C	SNP	ZNF611	NM_030972.3	human	genbank	58_37c	-1	validated	missense	c.490	p.L164V	0.000	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
