Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM29	0	genome.wustl.edu	37	4	175896768	175896768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	4	175896768	175896768	C	T	SNP	ADAM29	NM_001130703.1	human	genbank	58_37c	+1	reviewed	missense	c.92	p.P31L	0.075	HMMPfam_Pep_M12B_propep	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ARHGEF4	0	genome.wustl.edu	37	2	131785560	131785560	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	131785560	131785560	A	T	SNP	ARHGEF4	NM_015320.2	human	genbank	58_37c	+1	reviewed	missense	c.470	p.E157V	0.994	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
ATP6AP1	0	genome.wustl.edu	37	X	153657133	153657134	+	In_Frame_Ins	INS	-	-	GGCGGC	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	X	153657133	153657134	-	GGCGGC	INS	ATP6AP1	NM_001183.4	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.95_96	p.36in_frame_insAA	0.000:0.001	HMMPfam_ATP-synt_S1	HMMPfam_ATP-synt_S1	-	no_errors
BRCA2	0	genome.wustl.edu	37	13	32911964	32911964	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	32911964	32911964	G	C	SNP	BRCA2	NM_000059.3	human	genbank	58_37c	+1	reviewed	missense	c.3472	p.E1158Q	0.001	NULL	HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878	-	no_errors
BRCA2	0	genome.wustl.edu	37	13	32912065	32912065	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	32912065	32912065	G	C	SNP	BRCA2	NM_000059.3	human	genbank	58_37c	+1	reviewed	missense	c.3573	p.K1191N	0.000	NULL	HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878	-	no_errors
C14orf48	0	genome.wustl.edu	37	14	94467722	94467722	+	RNA	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	14	94467722	94467722	C	T	SNP	C14orf48	NR_024182.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
CDH26	0	genome.wustl.edu	37	20	58559737	58559737	+	Silent	SNP	A	A	G	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	20	58559737	58559737	A	G	SNP	CDH26	NM_177980.2	human	genbank	58_37c	+1	reviewed	silent	c.585	p.E195	0.048	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CEP120	0	genome.wustl.edu	37	5	122682280	122682282	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	122682280	122682282	TCC	-	DEL	CEP120	NM_153223.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.2894_2892	p.E964in_frame_del	1.000:1.000:0.999	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CITED2	0	genome.wustl.edu	37	6	139694508	139694508	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	6	139694508	139694508	T	C	SNP	CITED2	NM_006079.3	human	genbank	58_37c	-1	reviewed	missense	c.574	p.S192G	0.011	HMMPfam_CITED	HMMPfam_CITED	-	no_errors
CRAT	0	genome.wustl.edu	37	9	131859542	131859542	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	131859542	131859542	C	T	SNP	CRAT	NM_000755.3	human	genbank	58_37c	-1	reviewed	missense	c.1514	p.G505D	0.969	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
CREB3	0	genome.wustl.edu	37	9	35733103	35733103	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	35733103	35733103	C	G	SNP	CREB3	NM_006368.4	human	genbank	58_37c	+1	reviewed	silent	c.240	p.T80	1.000	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1	-	no_errors
DENND4B	0	genome.wustl.edu	37	1	153907305	153907306	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	1	153907305	153907306	-	C	INS	DENND4B	NM_014856.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.2704_2703	p.Q901fs	1.000:0.999	NULL	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
DNAH9	0	genome.wustl.edu	37	17	11772531	11772531	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	11772531	11772531	C	T	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	silent	c.10014	p.A3338	0.404	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000212859	0	genome.wustl.edu	37	17	81081960	81081960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	81081960	81081960	G	A	SNP	ENSG00000212859	ENST00000391547	human	ensembl	58_37c	+1	known	missense	c.74	p.G25D	0.238	NULL	NULL	-	no_start_codon
FBXW7	0	genome.wustl.edu	37	4	153251936	153251936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	4	153251936	153251936	C	T	SNP	FBXW7	NM_033632.2	human	genbank	58_37c	-1	reviewed	missense	c.1070	p.R357K	1.000	superfamily_WD40 repeat-like,superfamily_F-box domain	HMMSmart_SM00320,HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
GABRG2	0	genome.wustl.edu	37	5	161576176	161576176	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	161576176	161576176	G	T	SNP	GABRG2	NM_198903.2	human	genbank	58_37c	+1	reviewed	missense	c.1105	p.V369F	1.000	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
INTS6	0	genome.wustl.edu	37	13	52026554	52026554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	52026554	52026554	C	T	SNP	INTS6	NM_012141.2	human	genbank	58_37c	-1	reviewed	missense	c.108	p.M36I	1.000	superfamily_vWA-like	PatternScan_DEAD_ATP_HELICASE,superfamily_vWA-like	-	no_errors
KIAA1529	0	genome.wustl.edu	37	9	100087310	100087310	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	100087310	100087310	G	A	SNP	KIAA1529	NM_020893.1	human	genbank	58_37c	+1	predicted	missense	c.1930	p.E644K	0.861	NULL	NULL	-	no_errors
KRTAP5-4	0	genome.wustl.edu	37	11	1643066	1643066	+	Silent	SNP	A	A	G	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	11	1643066	1643066	A	G	SNP	KRTAP5-4	NM_001012709.1	human	genbank	58_37c	-1	provisional	silent	c.258	p.G86	0.089	NULL	PatternScan_VWFC_1,PatternScan_TNFR_NGFR_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LOC100132144	0	genome.wustl.edu	37	9	45727789	45727789	+	Missense_Mutation	SNP	C	T	T	rs6606222	byFrequency	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	45727789	45727789	C	T	SNP	LOC100132144	XM_001719572.2	human	genbank	58_37c	-1	model	missense	c.64	p.A22T	0.000	NULL	NULL	-	no_errors
LOC100288122	0	genome.wustl.edu	37	18	13387612	13387612	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	18	13387612	13387612	C	T	SNP	LOC100288122	XM_002344132.1	human	genbank	58_37c	-1	model	silent	c.282	p.L94	0.823	NULL	NULL	-	no_errors
LOC100294132	0	genome.wustl.edu	37	6	4077904	4077908	+	Frame_Shift_Del	DEL	CAGAA	CAGAA	-	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	CAGAA	CAGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	6	4077904	4077908	CAGAA	-	DEL	LOC100294132	XM_002343925.1	human	genbank	58_37c	+1	model	frame_shift_del	c.162_166	p.T56fs	0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC283685	0	genome.wustl.edu	37	15	23689114	23689114	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	15	23689114	23689114	C	T	SNP	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	splice_site	c.370+1	e4+1	0.000	-	-	-	no_errors
LOC653924	0	genome.wustl.edu	37	2	97748462	97748462	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	97748462	97748462	C	T	SNP	LOC653924	XM_001719255.2	human	genbank	58_37c	+1	model	silent	c.525	p.A175	0.126	NULL	NULL	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123194	16123194	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	22	16123194	16123194	G	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
MAP2K4	0	genome.wustl.edu	37	17	12016647	12016648	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	12016647	12016648	AA	-	DEL	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.783_784	p.D263fs	0.986:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195510372	195510372	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	195510372	195510372	G	C	SNP	MUC4	ENST00000475231	human	ensembl	58_37c	-1	known	missense	c.8079	p.D2693E	0.004	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
OR5H1	0	genome.wustl.edu	37	3	97851916	97851916	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	97851916	97851916	C	T	SNP	OR5H1	NM_001005338.1	human	genbank	58_37c	+1	provisional	silent	c.375	p.A125	0.997	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PHB2	0	genome.wustl.edu	37	12	7074852	7074852	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	12	7074852	7074852	T	G	SNP	PHB2	NM_001144831.1	human	genbank	58_37c	-1	validated	missense	c.896	p.K299T	0.982	NULL	HMMPfam_Band_7,HMMSmart_SM00244	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	rs121913286	byCluster	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	178936094	178936094	C	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1636	p.Q546K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952018	178952018	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	178952018	178952018	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3073	p.T1025A	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PRKACG	0	genome.wustl.edu	37	9	71628862	71628862	+	Silent	SNP	C	C	A	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	71628862	71628862	C	A	SNP	PRKACG	NM_002732.3	human	genbank	58_37c	-1	reviewed	silent	c.147	p.T49	0.984	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PTGER4	0	genome.wustl.edu	37	5	40692393	40692393	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	40692393	40692393	C	T	SNP	PTGER4	NM_000958.2	human	genbank	58_37c	+1	reviewed	silent	c.1380	p.S460	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
RASGRF2	0	genome.wustl.edu	37	5	80338748	80338748	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	80338748	80338748	G	A	SNP	RASGRF2	NM_006909.1	human	genbank	58_37c	+1	validated	missense	c.341	p.R114H	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_IQ,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_PH domain-like	-	no_errors
RASIP1	0	genome.wustl.edu	37	19	49227977	49227977	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	19	49227977	49227977	G	A	SNP	RASIP1	NM_017805.2	human	genbank	58_37c	-1	validated	nonsense	c.2368	p.R790*	1.000	HMMPfam_DIL	HMMPfam_RA,HMMSmart_RA,superfamily_SMAD_FHA,HMMPfam_DIL,superfamily_SSF54236	-	no_errors
SGSM2	0	genome.wustl.edu	37	17	2265513	2265513	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	2265513	2265513	T	C	SNP	SGSM2	NM_014853.2	human	genbank	58_37c	+1	validated	missense	c.407	p.L136P	1.000	HMMPfam_RUN,HMMSmart_RUN	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC,HMMPfam_RUN,HMMSmart_RUN	-	no_errors
SNED1	0	genome.wustl.edu	37	2	241989250	241989250	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	241989250	241989250	C	T	SNP	SNED1	ENST00000401644	human	ensembl	58_37c	+1	known	nonsense	c.724	p.R242*	0.960	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_start_codon:pseudogene:no_stop_codon
STX6	0	genome.wustl.edu	37	1	180971828	180971828	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	1	180971828	180971828	C	T	SNP	STX6	NM_005819.4	human	genbank	58_37c	-1	validated	missense	c.214	p.E72K	1.000	superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N	-	no_errors
TAOK1	0	genome.wustl.edu	37	17	27804712	27804712	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	27804712	27804712	G	T	SNP	TAOK1	NM_020791.1	human	genbank	58_37c	+1	validated	missense	c.340	p.D114Y	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
THBS4	0	genome.wustl.edu	37	5	79355631	79355631	+	Missense_Mutation	SNP	G	G	A	rs144667558	byFrequency	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	79355631	79355631	G	A	SNP	THBS4	NM_003248.4	human	genbank	58_37c	+1	reviewed	missense	c.890	p.R297Q	1.000	HMMSmart_EGF,superfamily_SSF57196	HMMSmart_EGF_CA,HMMSmart_TSPN,HMMPfam_TSP_3,HMMSmart_EGF,HMMPfam_TSP_C,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF103647,superfamily_SSF57196	-	no_errors
TNRC6B	0	genome.wustl.edu	37	22	40661715	40661715	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	22	40661715	40661715	A	G	SNP	TNRC6B	NM_015088.2	human	genbank	58_37c	+1	validated	missense	c.1481	p.N494S	1.000	NULL	HMMPfam_Ago_hook,superfamily_SSF54928	-	no_errors
