Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1BG	1	broad.mit.edu	37	19	58858921	58858921	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A1CF	29974	broad.mit.edu	37	10	52580287	52580287	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9021845	9021845	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9248129	9248129	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABAT	18	broad.mit.edu	37	16	8870076	8870076	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101606844	101606844	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17449426	17449426	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150916359	150916359	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100498978	100498978	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89415156	89415156	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN4	55515	broad.mit.edu	37	2	220379514	220379514	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT2	10965	broad.mit.edu	37	14	74042272	74042272	+	3'UTR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20548858	20548858	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20448524	20448524	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127724718	127724718	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207437900	207437900	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39624713	39624713	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106849194	106849194	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38884248	38884248	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33577084	33577084	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33683976	33683976	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296491	28296491	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFTPH	54812	broad.mit.edu	37	2	64780685	64780685	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96871085	96871085	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33294034	33294034	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT2	208	broad.mit.edu	37	19	40741335	40741335	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104189921	104189921	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110988103	110988103	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5128065	5128065	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113356422	113356422	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202352274	202352274	+	3'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108264099	108264099	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36483457	36483457	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40895191	40895191	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39445556	39445556	+	Silent	SNP	C	G	G	rs34578066	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21233375	21233375	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27369608	27369608	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF1	375	broad.mit.edu	37	1	228285785	228285785	+	3'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11B	89839	broad.mit.edu	37	15	30938486	30938486	+	RNA	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119134364	119134364	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11312822	11312822	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46245320	46245320	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34627853	34627853	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23270392	23270392	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC5	79798	broad.mit.edu	37	16	31476156	31476156	+	Silent	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232141472	232141472	+	Silent	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH1	427	broad.mit.edu	37	8	17933143	17933143	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177190270	177190270	+	5'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB7	140460	broad.mit.edu	37	15	101170138	101170138	+	Silent	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASRGL1	80150	broad.mit.edu	37	11	62139609	62139609	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119770520	119770520	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3A	55210	broad.mit.edu	37	1	1458249	1458249	+	Silent	SNP	G	T	T	rs139221376	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32093856	32093856	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47556801	47556801	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203689890	203689890	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0B	533	broad.mit.edu	37	1	44441472	44441472	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26148945	26148945	+	Splice_Site	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154304212	154304212	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154317977	154317977	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT4	338707	broad.mit.edu	37	11	379830	379830	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT5	9334	broad.mit.edu	37	20	48263366	48263366	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038750	11038750	+	3'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047629	11047629	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049484	11049484	+	3'UTR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69348714	69348714	+	Silent	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134334625	134334625	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59445833	59445833	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCMO1	53630	broad.mit.edu	37	16	81320986	81320986	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BECN1	8678	broad.mit.edu	37	17	40966604	40966604	+	Silent	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18238752	18238752	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC7	79444	broad.mit.edu	37	20	61870735	61870735	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16436214	16436214	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL2	254240	broad.mit.edu	37	22	32841392	32841392	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36938802	36938802	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140434413	140434413	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUD13	84811	broad.mit.edu	37	11	116628765	116628765	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf93	255352	broad.mit.edu	37	10	134754368	134754368	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf42	160298	broad.mit.edu	37	11	6231940	6231940	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88374099	88374099	+	3'UTR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf28	122525	broad.mit.edu	37	14	45374763	45374763	+	3'UTR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf46	124783	broad.mit.edu	37	17	43331893	43331896	+	Intron	DEL	AGAG	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf48	56985	broad.mit.edu	37	17	10608454	10608454	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf68	80169	broad.mit.edu	37	17	8141519	8141519	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf54	162681	broad.mit.edu	37	18	51892230	51892230	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf200	644997	broad.mit.edu	37	1	9713992	9713992	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf216	127703	broad.mit.edu	37	1	36181806	36181806	+	Silent	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489756	178489756	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf55	163859	broad.mit.edu	37	1	226183030	226183030	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14424200	14424200	+	RNA	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37125560	37125560	+	Intron	SNP	C	A	A	rs139274257	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41160203	41160203	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165714065	165714065	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715841	165715841	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf64	84060	broad.mit.edu	37	7	92164123	92164123	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57351892	57351892	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf38	137682	broad.mit.edu	37	8	96064465	96064465	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf74	203076	broad.mit.edu	37	8	10555360	10555360	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27918183	27918183	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf64	84267	broad.mit.edu	37	9	86571450	86571450	+	5'UTR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15784550	15784550	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1250434	1250434	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159162339	159162339	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CANX	821	broad.mit.edu	37	5	179149988	179149988	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARS2	79587	broad.mit.edu	37	13	111329502	111329502	+	Intron	DEL	C	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90576192	90576192	+	Silent	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN3	643866	broad.mit.edu	37	14	24897315	24897315	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144B	284047	broad.mit.edu	37	17	18513266	18513266	+	Intron	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC37	348807	broad.mit.edu	37	3	126135138	126135138	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85606473	85606473	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88C	440193	broad.mit.edu	37	14	91779574	91779574	+	Silent	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL23	6368	broad.mit.edu	37	17	34340789	34340789	+	Silent	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNG2	901	broad.mit.edu	37	4	78083007	78083007	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT2	10576	broad.mit.edu	37	12	69983267	69983267	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072057	17072057	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072155	17072155	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072228	17072228	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072351	17072351	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072376	17072376	+	Silent	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17073279	17073279	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17073380	17073380	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17073395	17073395	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7805561	7805561	+	3'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174228252	174228252	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63511297	63511297	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17669446	17669446	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135947032	135947032	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214791961	214791961	+	Silent	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49030868	49030868	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES4	51716	broad.mit.edu	37	16	55806304	55806304	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55886647	55886647	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES8	283848	broad.mit.edu	37	16	67035550	67035550	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFI	3426	broad.mit.edu	37	4	110687980	110687980	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49539682	49539682	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126485328	126485328	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L1	1116	broad.mit.edu	37	1	203148404	203148404	+	3'UTR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST15	51363	broad.mit.edu	37	10	125797915	125797915	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4M	10332	broad.mit.edu	37	19	7830367	7830367	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK1	1195	broad.mit.edu	37	2	201726365	201726365	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62411997	62411997	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAH	8418	broad.mit.edu	37	6	25153012	25153012	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM5	116173	broad.mit.edu	37	14	23847613	23847613	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99008299	99008299	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNR2	1269	broad.mit.edu	37	1	24201556	24201556	+	Silent	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17395095	17395095	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125521483	125521483	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103491751	103491751	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75844451	75844451	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107814662	107814662	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10080331	10080332	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47541582	47541582	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47542430	47542430	+	Silent	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130361756	130361756	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS2	9318	broad.mit.edu	37	15	49431825	49431825	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA6	57094	broad.mit.edu	37	8	68430094	68430094	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197411255	197411255	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20031146	20031146	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17257855	17257855	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149435795	149435795	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34191213	34191213	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113314033	113314033	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113648999	113648999	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113702259	113702259	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113988072	113988072	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL3	8452	broad.mit.edu	37	2	225376300	225376300	+	Splice_Site	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C8	1558	broad.mit.edu	37	10	96827275	96827275	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42027798	42027798	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99457661	99457661	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15791370	15791370	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20217341	20217341	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72063035	72063035	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAG1	1605	broad.mit.edu	37	3	49569641	49569641	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF16	54876	broad.mit.edu	37	4	17805366	17805366	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAKD	79877	broad.mit.edu	37	17	43111525	43111525	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	155002563	155002563	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31249591	31249592	+	Missense_Mutation	DNP	GT	TA	TA			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX49	54555	broad.mit.edu	37	19	19038921	19038921	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA4	1669	broad.mit.edu	37	8	6794176	6794176	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29978208	29978208	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140301877	140301877	+	Silent	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100646344	100646344	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC6	64798	broad.mit.edu	37	8	120941887	120941887	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKD	8527	broad.mit.edu	37	2	234360762	234360762	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40P1	653645	broad.mit.edu	37	17	58077434	58077434	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60582753	60582753	+	Silent	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51065097	51065097	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233075098	233075098	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1497520	1497520	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX2	1746	broad.mit.edu	37	2	172966464	172966464	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53930233	53930233	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76567765	76567765	+	5'Flank	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11805970	11805970	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51392314	51392314	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37618548	37618548	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117395563	117395563	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DULLARD	23399	broad.mit.edu	37	17	7150664	7150664	+	Splice_Site	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUX4	22947	broad.mit.edu	37	4	191003218	191003218	+	5'Flank	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77423507	77423507	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECD	11319	broad.mit.edu	37	10	74899557	74899557	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36320642	36320642	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44168670	44168670	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1L1	254102	broad.mit.edu	37	11	65349621	65349621	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B4	8890	broad.mit.edu	37	2	27590037	27590037	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120605878	120605878	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23111646	23111646	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220178627	220178627	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37868024	37868024	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS2	2114	broad.mit.edu	37	21	40191577	40191577	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3	11336	broad.mit.edu	37	5	454086	454086	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6182453	6182453	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57421225	57421225	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126B	285172	broad.mit.edu	37	2	201931713	201931713	+	Intron	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM158A	51016	broad.mit.edu	37	14	24610337	24610337	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74091819	74091819	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62628503	62628503	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21825463	21825463	+	RNA	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM58A	92002	broad.mit.edu	37	X	152860006	152860006	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177226496	177226496	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11991237	11991237	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12236614	12236614	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82B	51115	broad.mit.edu	37	8	87498776	87498776	+	Nonsense_Mutation	SNP	A	T	T	rs144513651		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM86B2	653333	broad.mit.edu	37	8	12287848	12287848	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92087733	92087733	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92498063	92498064	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126239750	126239750	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5955787	5955787	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO27	126433	broad.mit.edu	37	19	39522510	39522510	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147796641	147796641	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157738300	157738300	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95773622	95773622	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL1	2267	broad.mit.edu	37	8	17726037	17726037	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHDC1	85462	broad.mit.edu	37	4	153864685	153864685	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	60718286	60718286	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBIN	387758	broad.mit.edu	37	11	27016285	27016285	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277110	152277110	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ10357	55701	broad.mit.edu	37	14	21553834	21553834	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142469694	142469694	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC8	54752	broad.mit.edu	37	17	33448781	33448781	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49227605	49227605	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRK	2444	broad.mit.edu	37	6	116289825	116289827	+	In_Frame_Del	DEL	TTC	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168467423	168467423	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52778792	52778792	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTHL17	53940	broad.mit.edu	37	X	31090140	31090140	+	5'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD10	11211	broad.mit.edu	37	12	130647553	130647553	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB1	2549	broad.mit.edu	37	4	144359061	144359061	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29541893	29541893	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29574725	29574725	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26534843	26534843	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAN	8139	broad.mit.edu	37	16	81388292	81388292	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	101005791	101005791	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2A	54815	broad.mit.edu	37	19	19611894	19611894	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT1	2650	broad.mit.edu	37	9	79118029	79118029	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72631270	72631270	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1B	8328	broad.mit.edu	37	9	135865099	135865099	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179765436	179765436	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179765470	179765470	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA3	23163	broad.mit.edu	37	17	73237911	73237911	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP2	26157	broad.mit.edu	37	7	150389570	150389570	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIP	2695	broad.mit.edu	37	17	47041781	47041781	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRB	2743	broad.mit.edu	37	4	157999329	157999329	+	Intron	DEL	G	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133368076	133368076	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155764977	155764977	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94482405	94482405	+	Splice_Site	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20084939	20084939	+	5'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR155	151556	broad.mit.edu	37	2	175300882	175300882	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR180	160897	broad.mit.edu	37	13	95271297	95271297	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR22	2845	broad.mit.edu	37	7	107115753	107115753	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19012897	19012897	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPS1	2873	broad.mit.edu	37	17	80011904	80011904	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30959669	30959669	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720730	146720730	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88323946	88323946	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178424907	178424907	+	5'Flank	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145034897	145034897	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMA	3001	broad.mit.edu	37	5	54401488	54401488	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAL	3034	broad.mit.edu	37	12	96374622	96374622	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41004553	41004553	+	Silent	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84348734	84348734	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32163912	32163912	+	5'Flank	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28413406	28413406	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28414753	28414754	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75187579	75187579	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71020806	71020806	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKR1	284459	broad.mit.edu	37	19	37853356	37853356	+	Missense_Mutation	SNP	G	T	T	rs143859791		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-J	3137	broad.mit.edu	37	6	29974314	29974314	+	5'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLCS	3141	broad.mit.edu	37	21	38137445	38137445	+	Silent	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186086738	186086738	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43048493	43048493	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPAB	3182	broad.mit.edu	37	5	177632764	177632764	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPK	3190	broad.mit.edu	37	9	86593299	86593299	+	Translation_Start_Site	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB4	3214	broad.mit.edu	37	17	46655326	46655326	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22178777	22178777	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147845314	147845314	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70893944	70893944	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICAM2	3384	broad.mit.edu	37	17	62081303	62081303	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIT2	3433	broad.mit.edu	37	10	91067141	91067141	+	3'UTR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47121275	47121275	+	Intron	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F5	26525	broad.mit.edu	37	2	113819953	113819953	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100963143	100963143	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15198538	15198538	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG2	51141	broad.mit.edu	37	2	118860657	118860657	+	Intron	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSM1	3642	broad.mit.edu	37	20	20348899	20348899	+	5'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156810734	156810734	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30783692	30783692	+	3'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISCA1	81689	broad.mit.edu	37	9	88881102	88881103	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52360751	52360751	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30509426	30509426	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31392131	31392131	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7759743	7759743	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65325708	65325708	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75442064	75442064	+	Missense_Mutation	SNP	G	A	A	rs142936560	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19322621	19322621	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK17	89822	broad.mit.edu	37	6	39278775	39278775	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHSRP	8570	broad.mit.edu	37	19	6417152	6417152	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29446938	29446938	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94048432	94048432	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94088409	94088409	+	Silent	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36868046	36868046	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3B	9371	broad.mit.edu	37	20	30915258	30915258	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39330242	39330242	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLB	152831	broad.mit.edu	37	4	39408690	39408691	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70413137	70413137	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	134997434	134997434	+	Missense_Mutation	SNP	G	A	A	rs144320928		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733141	152733141	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33B	3884	broad.mit.edu	37	17	39521447	39521447	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39594386	39594386	+	Missense_Mutation	SNP	C	A	A	rs72828202	byFrequency;by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53166440	53166440	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-1	81851	broad.mit.edu	37	17	39197262	39197262	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253670	32253670	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-3	337960	broad.mit.edu	37	21	31798219	31798219	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25948905	25948905	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL2	83746	broad.mit.edu	37	22	41615532	41615532	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42162154	42162154	+	Intron	SNP	C	T	T	rs113657496		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129649532	129649532	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36993140	36993140	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN9	392399	broad.mit.edu	37	9	138556120	138556120	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17913742	17913743	+	Intron	DNP	TC	AA	AA			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD2	401944	broad.mit.edu	37	1	22150748	22150748	+	3'UTR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETM2	137994	broad.mit.edu	37	8	38264754	38264754	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9C	654346	broad.mit.edu	37	17	18394415	18394415	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71978333	71978333	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111874652	111874652	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75602950	75602950	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106723	55106723	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55086877	55086877	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA5	353514	broad.mit.edu	37	19	54818626	54818626	+	3'UTR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54782754	54782754	+	Missense_Mutation	SNP	A	G	G	rs143661416	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756140	54756140	+	Intron	SNP	C	T	T	rs3889745		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN37	55957	broad.mit.edu	37	19	36244981	36244981	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45634959	45634959	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7191540	7191541	+	Intron	DEL	CA	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132202309	132202309	+	5'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932875	148932875	+	RNA	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78211461	78211461	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC649330	649330	broad.mit.edu	37	1	12908093	12908093	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66124355	66124355	+	RNA	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653544	653544	broad.mit.edu	37	4	190989637	190989637	+	5'Flank	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP1	9361	broad.mit.edu	37	19	5694281	5694281	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161027467	161027467	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82409048	82409048	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62598544	62598544	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151773298	151773298	+	Silent	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133948536	133948536	+	Intron	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66436828	66436828	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141812830	141812830	+	Splice_Site	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC33	375387	broad.mit.edu	37	3	196386524	196386524	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A4	55073	broad.mit.edu	37	17	43596429	43596429	+	5'Flank	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC45	201255	broad.mit.edu	37	17	79985707	79985707	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8C	84230	broad.mit.edu	37	1	90152311	90152311	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204588748	204588748	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745546	77745546	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166959144	166959144	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K2	10746	broad.mit.edu	37	2	128088066	128088066	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136901580	136901580	+	Intron	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10426693	10426693	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH7	64844	broad.mit.edu	37	2	160585777	160585777	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH9	92979	broad.mit.edu	37	12	58149711	58149711	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198571112	198571112	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN1	4146	broad.mit.edu	37	1	31189047	31189047	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM10	55388	broad.mit.edu	37	10	13251196	13251196	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47504503	47504503	+	Silent	SNP	T	A	A	rs146423621	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90503894	90503894	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116401214	116401214	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED25	81857	broad.mit.edu	37	19	50334694	50334694	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112751738	112751738	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL11A	28989	broad.mit.edu	37	9	132396294	132396294	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL13	51603	broad.mit.edu	37	1	171755174	171755174	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGRN1	23295	broad.mit.edu	37	16	4730185	4730185	+	Intron	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301671	18301671	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811308	23811308	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49422684	49422684	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151962157	151962157	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132695975	132695975	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13188859	13188859	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154009732	154009732	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP6	51678	broad.mit.edu	37	7	24705104	24705104	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS31	10240	broad.mit.edu	37	13	41328102	41328102	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60064740	60064740	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	819649	819649	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1	4522	broad.mit.edu	37	14	64897086	64897086	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11194590	11194590	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	236969511	236969511	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTSS1L	92154	broad.mit.edu	37	16	70712199	70712199	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9062932	9062932	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MURC	347273	broad.mit.edu	37	9	103348672	103348672	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBPAP	84073	broad.mit.edu	37	17	48597186	48597186	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEOV	26579	broad.mit.edu	37	11	69063518	69063518	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81101854	81101854	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15820896	15820896	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108159970	108159970	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10403991	10403991	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10405338	10405338	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL2	4633	broad.mit.edu	37	12	111356969	111356969	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123456177	123456177	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18023558	18023558	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109841826	109841826	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52553358	52553358	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12661232	12661232	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95082779	95082779	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAF1	92345	broad.mit.edu	37	4	164061566	164061566	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101755543	101755543	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT9	26151	broad.mit.edu	37	17	72769927	72769927	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78512105	78512105	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1	10787	broad.mit.edu	37	2	183791692	183791692	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152522052	152522052	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFM	4741	broad.mit.edu	37	8	24771756	24771756	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK9	91754	broad.mit.edu	37	14	75573382	75573382	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20982079	20982079	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL	9148	broad.mit.edu	37	10	105330758	105330758	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204917937	204917937	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB2	4791	broad.mit.edu	37	10	104159992	104159992	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFR	4804	broad.mit.edu	37	17	47583901	47583901	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL2	79815	broad.mit.edu	37	8	99264759	99264759	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173323002	173323002	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN2	57555	broad.mit.edu	37	17	7317981	7317981	+	Splice_Site	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLN	57486	broad.mit.edu	37	5	65029493	65029494	+	Intron	DNP	AT	GC	GC			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55450745	55450745	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151777533	151777533	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43704593	43704593	+	3'UTR	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL6	65083	broad.mit.edu	37	9	33473885	33473885	+	5'UTR	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP56	10528	broad.mit.edu	37	20	2638609	2638609	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162313767	162313767	+	Splice_Site	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117696828	117696828	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOV	4856	broad.mit.edu	37	8	120431528	120431528	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155761074	155761074	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132423266	132423266	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPM3	10360	broad.mit.edu	37	10	103541717	103541717	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50318616	50318616	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176665401	176665401	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT12	83594	broad.mit.edu	37	5	102895641	102895641	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228494002	228494002	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228558786	228558786	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167674480	167674480	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183676073	183676073	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50959844	50959844	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70774416	70774416	+	Silent	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLA1	29789	broad.mit.edu	37	2	175111467	175111467	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OOEP	441161	broad.mit.edu	37	6	74079269	74079269	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J1	26476	broad.mit.edu	37	1	159410018	159410018	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159284169	159284169	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C2	392376	broad.mit.edu	37	9	107367202	107367202	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6806427	6806428	+	Silent	DNP	CC	AA	AA			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247347	248247347	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436566	248436566	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4F15	390649	broad.mit.edu	37	15	102358761	102358761	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4661752	4661752	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A2	219981	broad.mit.edu	37	11	59190046	59190046	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E5P	219445	broad.mit.edu	37	11	55747471	55747471	+	5'UTR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORAI1	84876	broad.mit.edu	37	12	122079563	122079563	+	3'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTalpha	200931	broad.mit.edu	37	3	195953990	195953990	+	Silent	SNP	G	A	A	rs139345051		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3593568	3593568	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPN1	8106	broad.mit.edu	37	14	23792382	23792382	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122420301	122420301	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVB	29780	broad.mit.edu	37	22	44527413	44527413	+	Silent	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX7	5081	broad.mit.edu	37	1	19062359	19062359	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBLD	64081	broad.mit.edu	37	10	70048359	70048375	+	Frame_Shift_Del	DEL	CCTGTGTTTTCAACTTG	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52661508	52661508	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP1	5093	broad.mit.edu	37	2	70314810	70314810	+	5'UTR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56360356	56360356	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	31144129	31144129	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140256796	140256796	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA2	56146	broad.mit.edu	37	5	140176000	140176000	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140564342	140564342	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140480154	140480154	+	5'Flank	DEL	G	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA10	56106	broad.mit.edu	37	5	140793377	140793377	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB7	56099	broad.mit.edu	37	5	140797646	140797646	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82764745	82764745	+	Silent	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71514586	71514586	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	647926	647926	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20386369	20386369	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB4	5210	broad.mit.edu	37	3	48573763	48573763	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97797349	97797349	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35093361	35093361	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98469537	98469537	+	Missense_Mutation	SNP	C	T	T	rs146527410	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1C	23396	broad.mit.edu	37	19	3642713	3642713	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	33021747	33021747	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160806345	160806345	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64026281	64026281	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95791385	95791385	+	Silent	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16838843	16838843	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHN1	84069	broad.mit.edu	37	1	905907	905907	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68607985	68607985	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLGLA	285189	broad.mit.edu	37	2	107007489	107007489	+	RNA	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLGLA	285189	broad.mit.edu	37	2	107007493	107007493	+	RNA	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161135878	161135878	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161173312	161173312	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4511380	4511380	+	Silent	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR4	57088	broad.mit.edu	37	3	145913109	145913109	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44531074	44531074	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131888169	131888169	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94603508	94603508	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA5	150379	broad.mit.edu	37	22	44276817	44276817	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLM	27434	broad.mit.edu	37	7	44116296	44116296	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121206886	121206886	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POP4	10775	broad.mit.edu	37	19	30102776	30102776	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POPDC3	64208	broad.mit.edu	37	6	105609367	105609367	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38162191	38162191	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38172804	38172804	+	Silent	SNP	G	A	A	rs138966400	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTED	317754	broad.mit.edu	37	21	14983042	14983042	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARD	5467	broad.mit.edu	37	6	35393441	35393441	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CB	5532	broad.mit.edu	37	10	75206339	75206339	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3R1	5534	broad.mit.edu	37	2	68413773	68413773	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32123309	32123309	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69002766	69002766	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186276183	186276183	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIP1	79706	broad.mit.edu	37	7	102047968	102047968	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76063505	76063505	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20486126	20486126	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45110461	45110461	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36467789	36467789	+	Intron	SNP	T	C	C	rs112588084		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS36	146547	broad.mit.edu	37	16	31154786	31154786	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS38	339501	broad.mit.edu	37	1	228005254	228005254	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAP	5660	broad.mit.edu	37	10	73579275	73579275	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43348706	43348706	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43430068	43430068	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11585379	11585379	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48131009	48131009	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	3001866	3001866	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721700	198721700	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8484300	8484300	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55711567	55711567	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8370828	8370829	+	Intron	DNP	TG	AT	AT			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157414082	157414082	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29642075	29642075	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121684368	121684368	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20457962	20457962	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117868465	117868465	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP2	23108	broad.mit.edu	37	17	2901471	2901471	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA2	5922	broad.mit.edu	37	3	141327427	141327427	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1C	255426	broad.mit.edu	37	5	179564831	179564831	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCAN2	10231	broad.mit.edu	37	6	46293311	46293311	+	5'UTR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384953	79384953	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253767	79253767	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254104	79254104	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103126853	103126853	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3263012	3263012	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDL1	9028	broad.mit.edu	37	16	727062	727062	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104955095	104955095	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE11	122651	broad.mit.edu	37	14	21052268	21052268	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77595510	77595510	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77612382	77612382	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470214	10470214	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP2	79871	broad.mit.edu	37	1	92789591	92789591	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP2	79871	broad.mit.edu	37	1	92846257	92846257	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113303262	113303262	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL13AP20	387841	broad.mit.edu	37	12	13028826	13028826	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL31P11	641311	broad.mit.edu	37	1	161654774	161654774	+	RNA	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS23	6228	broad.mit.edu	37	5	81574063	81574063	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSAP58	388524	broad.mit.edu	37	19	24010122	24010122	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSAP58	388524	broad.mit.edu	37	19	24010315	24010315	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC1	146923	broad.mit.edu	37	17	41143406	41143406	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX2	860	broad.mit.edu	37	6	45480163	45480163	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32332699	32332699	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237663945	237663945	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237713886	237713886	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAV1	60485	broad.mit.edu	37	14	51131974	51131974	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9874111	9874117	+	Intron	DEL	GGAGTTA	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78146329	78146329	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	159614441	159614441	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165997321	165997321	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167142803	167142803	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP2	727956	broad.mit.edu	37	3	195391049	195391049	+	5'UTR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC22B	9554	broad.mit.edu	37	1	145115850	145115850	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74707315	74707315	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95029670	95029670	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA5	5104	broad.mit.edu	37	14	95056656	95056656	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB1	1992	broad.mit.edu	37	6	2838261	2838265	+	Intron	DEL	ATATA	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100771819	100771819	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42533267	42533267	+	Missense_Mutation	SNP	G	T	T	rs149638556	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37412861	37412861	+	Intron	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84245579	84245579	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51189549	51189549	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146276182	146276182	+	Frame_Shift_Del	DEL	A	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52033903	52033903	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52034721	52034721	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232619633	232619633	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54654435	54654435	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A3	51296	broad.mit.edu	37	11	60714394	60714394	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100796557	100796557	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A11	55867	broad.mit.edu	37	11	64331815	64331815	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35C2	51006	broad.mit.edu	37	20	44983627	44983627	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46592316	46592316	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A2	6520	broad.mit.edu	37	11	62656234	62656234	+	3'UTR	SNP	C	G	G	rs1051290		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A4	80736	broad.mit.edu	37	6	31843659	31843659	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42340147	42340147	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27465719	27465719	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27498176	27498176	+	5'UTR	SNP	G	A	A	rs73151853	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55703417	55703417	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103095664	103095664	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70585057	70585057	+	3'UTR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101748939	101748939	+	Intron	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98823918	98823918	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84454289	84454289	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88330366	88330366	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLTM	79811	broad.mit.edu	37	15	59191867	59191867	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2101582	2101582	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD1	6602	broad.mit.edu	37	12	50480787	50480787	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-9	767585	broad.mit.edu	37	14	101431171	101431171	+	5'Flank	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-11	100033448	broad.mit.edu	37	15	25434475	25434475	+	5'Flank	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34922564	34922564	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34923302	34923302	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106974167	106974167	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121403215	121403215	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39281974	39281974	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22700146	22700146	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDEF	25803	broad.mit.edu	37	6	34507190	34507190	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220330715	220330715	+	Intron	SNP	G	T	T	rs143744745	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147488428	147488428	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167656177	167656177	+	Silent	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55656573	55656573	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55658605	55658605	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158615031	158615031	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131329002	131329002	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65216089	65216089	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9097848	9097848	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SST	6750	broad.mit.edu	37	3	187387109	187387109	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48214519	48214519	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52553536	52553536	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104096858	104096858	+	Intron	SNP	C	G	G	rs144421915	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK36	27148	broad.mit.edu	37	2	219562210	219562210	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK36	27148	broad.mit.edu	37	2	219563440	219563440	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN3	29966	broad.mit.edu	37	14	31374709	31374709	+	Silent	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108881745	108881745	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27011938	27011938	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV420H2	84787	broad.mit.edu	37	19	55853579	55853579	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75427939	75427939	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152655123	152655123	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNM	23336	broad.mit.edu	37	15	99673193	99673193	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1A	9015	broad.mit.edu	37	1	222761891	222761891	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN2	8407	broad.mit.edu	37	1	159888698	159888698	+	Silent	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234595080	234595080	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19181144	19181144	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBPL2	387332	broad.mit.edu	37	14	55895776	55895776	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67241985	67241985	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD1	7003	broad.mit.edu	37	11	12901386	12901386	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR1	25851	broad.mit.edu	37	7	97870673	97870673	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120996458	120996458	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30704102	30704102	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552187	43552187	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133948143	133948143	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648860	169648860	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79375018	79375018	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32825388	32825388	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54191689	54191689	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30010701	30010701	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98273371	98273371	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12938519	12938519	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105360725	105360725	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125833842	125833842	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74313084	74313084	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87B	84910	broad.mit.edu	37	2	112856185	112856185	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111794427	111794427	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF11	8600	broad.mit.edu	37	13	43181007	43181007	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175097113	175097113	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175324739	175324739	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372653	175372653	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175375921	175375921	+	5'UTR	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218686682	218686682	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47463613	47463613	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25642557	25642557	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM3	7170	broad.mit.edu	37	1	154166050	154166050	+	5'Flank	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1426848	1426848	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1488719	1488719	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10922019	10922019	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10942681	10942681	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41160566	41160566	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42230897	42230897	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14471394	14471394	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP10	9322	broad.mit.edu	37	19	6750571	6750571	+	Silent	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72967643	72967643	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72984007	72984007	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111020010	111020010	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45815244	45815244	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45821808	45821808	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73151524	73151524	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73218374	73218374	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK4	283629	broad.mit.edu	37	14	24676508	24676508	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94863722	94863722	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167753913	167753913	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30497492	30497493	+	Intron	DNP	GG	TT	TT			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179415733	179415733	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179422644	179422644	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179474458	179474458	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179610734	179610734	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBBP5	643224	broad.mit.edu	37	9	141071839	141071839	+	3'UTR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUT1	64852	broad.mit.edu	37	11	62346199	62346199	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD1	7296	broad.mit.edu	37	12	104681198	104681198	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD1	7296	broad.mit.edu	37	12	104681321	104681324	+	Intron	DEL	TCTC	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UAP1	6675	broad.mit.edu	37	1	162567548	162567548	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2C	11065	broad.mit.edu	37	20	44443866	44443866	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2J2	118424	broad.mit.edu	37	1	1192480	1192480	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2K	3093	broad.mit.edu	37	4	39771868	39771868	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109926480	109926480	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10239470	10239470	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN11	91544	broad.mit.edu	37	1	26629269	26629269	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGP2	7360	broad.mit.edu	37	2	64069455	64069455	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20348852	20348852	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96106167	96106167	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215848813	215848813	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP15	9958	broad.mit.edu	37	12	62783190	62783190	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113688669	113688669	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP48	84196	broad.mit.edu	37	1	22083110	22083110	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75258547	75258547	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144719265	144719265	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144719292	144719292	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144844318	144844318	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120631713	120631713	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15041237	15041237	+	IGR	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30450995	30450995	+	IGR	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37627790	37627790	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38894632	38894632	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9765304	9765304	+	IGR	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133734779	133734779	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18909163	18909163	+	IGR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48485881	48485881	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49007574	49007574	+	IGR	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49053327	49053327	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49942265	49942265	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129743	50129743	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71528188	71528188	+	IGR	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89464699	89464699	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98435675	98435675	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33607309	33607309	+	IGR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55974356	55974356	+	IGR	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80696508	80696508	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19298654	19298655	+	IGR	DNP	TG	AA	AA			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19467491	19467491	+	IGR	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19727774	19727774	+	IGR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	47033302	47033302	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52888515	52888515	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65533425	65533425	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68406704	68406704	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19855396	19855396	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25900854	25900854	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20170376	20170376	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50086537	50086537	+	IGR	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	85806244	85806244	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	89503771	89503771	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28251685	28251685	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31173936	31173936	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399491	32399491	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399627	32399627	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380035	33380035	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22066801	22066801	+	IGR	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52032184	52032184	+	IGR	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76525628	76525628	+	IGR	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20878892	20878892	+	IGR	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43787936	43787936	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120144055	120144055	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21724840	21724840	+	IGR	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	42506624	42506624	+	IGR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18763623	18763623	+	IGR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899130	10899130	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21797864	21797864	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123796	16123796	+	IGR	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132366972	132366972	+	IGR	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	183936143	183936143	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71382372	71382373	+	IGR	INS	-	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424248	81424248	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	29129154	29129154	+	IGR	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73697753	73697753	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179207895	179207895	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189309251	189309251	+	IGR	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69480323	69480323	+	IGR	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70221250	70221250	+	IGR	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	81082917	81082917	+	IGR	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31054175	31054175	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	62597616	62597616	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112939007	112939007	+	IGR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122004504	122004504	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160133929	160133929	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27979976	27979976	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27979996	27979996	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71318060	71318060	+	IGR	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93598263	93598263	+	IGR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10491801	10491801	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131578091	131578091	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145281555	145281555	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46039197	46039197	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53071083	53071083	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55659463	55659463	+	IGR	SNP	T	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56231154	56231154	+	IGR	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56431240	56431240	+	IGR	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11809730	11809730	+	IGR	DEL	T	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29885985	29885985	+	IGR	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33380746	33380746	+	IGR	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50653803	50653803	+	IGR	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44090279	44090279	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67046893	67046893	+	IGR	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357774	68357774	+	IGR	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	119867165	119867165	+	IGR	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	44335327	44335327	+	IGR	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63652431	63652431	+	IGR	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65718283	65718283	+	IGR	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101185437	101185437	+	Silent	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS16	64601	broad.mit.edu	37	20	2846970	2846970	+	Intron	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAS	7454	broad.mit.edu	37	X	48546470	48546470	+	Silent	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42321608	42321608	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR37	22884	broad.mit.edu	37	10	1151165	1151165	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36590594	36590594	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67299654	67299654	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF2	147179	broad.mit.edu	37	17	38416675	38416675	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32410792	32410792	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111628167	111628167	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183432964	183432964	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167068302	167068302	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167086333	167086333	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP36L1	677	broad.mit.edu	37	14	69256990	69256990	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP91	80829	broad.mit.edu	37	11	58385241	58385241	+	3'UTR	DEL	A	-	-	rs633713		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM1	79830	broad.mit.edu	37	1	35579110	35579110	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219503486	219503486	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF19	7567	broad.mit.edu	37	16	71512893	71512893	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154366	22154366	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF219	51222	broad.mit.edu	37	14	21558621	21558621	+	3'UTR	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF227	7770	broad.mit.edu	37	19	44740634	44740634	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF286A	57335	broad.mit.edu	37	17	15620368	15620368	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF320	162967	broad.mit.edu	37	19	53384141	53384141	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64239687	64239687	+	3'UTR	SNP	A	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21467189	21467189	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF416	55659	broad.mit.edu	37	19	58084737	58084737	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF460	10794	broad.mit.edu	37	19	57802481	57802481	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF483	158399	broad.mit.edu	37	9	114305028	114305028	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF490	57474	broad.mit.edu	37	19	12719994	12719994	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21588789	21588789	+	Intron	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32847439	32847439	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF527	84503	broad.mit.edu	37	19	37879423	37879423	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935349	30935350	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53218914	53218914	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52627140	52627140	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF646	9726	broad.mit.edu	37	16	31092791	31092791	+	Silent	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF646	9726	broad.mit.edu	37	16	31092914	31092914	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81599369	81599369	+	Intron	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780A	284323	broad.mit.edu	37	19	40581109	40581109	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40541960	40541960	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM5	57643	broad.mit.edu	37	1	45508890	45508890	+	Splice_Site	DEL	C	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZYG11B	79699	broad.mit.edu	37	1	53250482	53250482	+	Intron	DEL	A	-	-			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103708136	103708136	+	RNA	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22409639	22409639	+	Intron	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38273713	38273713	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5339209	5339209	+	Intron	SNP	G	T	T	rs147047553	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	90160967	90160967	+	Intron	SNP	T	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45127206	45127206	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	1854885	1854885	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28739870	28739870	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28739994	28739994	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28793037	28793037	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89495665	89495665	+	RNA	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89495727	89495727	+	RNA	SNP	G	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90108952	90108952	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90211831	90211831	+	Intron	SNP	C	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90458584	90458584	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180546720	180546720	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88814229	88814229	+	Intron	SNP	C	A	A			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142180669	142180669	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247218	142247218	+	Intron	SNP	G	T	T			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142469273	142469273	+	Intron	SNP	T	C	C			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
