Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	broad.mit.edu	37	7	48337903	48337903	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20685855	20685855	+	5'Flank	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31712384	31712384	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236708	106236708	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24324565	24324565	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64466387	64466387	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1	60312	broad.mit.edu	37	4	7788086	7788086	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87897438	87897438	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100387286	100387286	+	3'UTR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGT	183	broad.mit.edu	37	1	230839235	230839235	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26672594	26672594	+	5'Flank	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86198537	86198537	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33107382	33107382	+	Intron	DEL	G	-	-	rs71432071		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134225855	134225855	+	3'UTR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29498144	29498144	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113348916	113348916	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114274827	114274827	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99145047	99145047	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29346296	29346296	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21225814	21225814	+	Silent	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21229634	21229634	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10	9639	broad.mit.edu	37	8	1844525	1844525	+	Silent	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF18	23370	broad.mit.edu	37	19	7506776	7506776	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155939235	155939235	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNSD1	54529	broad.mit.edu	37	2	190531044	190531044	+	Silent	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG7	10533	broad.mit.edu	37	3	11402264	11402264	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZGP1	563	broad.mit.edu	37	7	99569388	99569388	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT1	27087	broad.mit.edu	37	11	134257560	134257560	+	5'UTR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11059056	11059056	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	33976829	33976829	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15565152	15565152	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49691540	49691540	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40066981	40066981	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1363321	1363321	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF7	114905	broad.mit.edu	37	4	15444526	15444526	+	3'UTR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf104	284618	broad.mit.edu	37	1	155291221	155291221	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247727019	247727019	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34684404	34684404	+	3'UTR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf70	140683	broad.mit.edu	37	20	31760818	31760818	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf17	84103	broad.mit.edu	37	4	100450863	100450863	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf106	64771	broad.mit.edu	37	6	34664402	34664402	+	5'UTR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32290059	32290059	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69502858	69502858	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf75	619351	broad.mit.edu	37	8	29591949	29591949	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15623251	15623251	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	50145599	50145599	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181570250	181570250	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18691050	18691050	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	37026262	37026262	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7060697	7060697	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43927614	43927614	+	Silent	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57229714	57229715	+	Intron	INS	-	A	A	rs139186821	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC56	28958	broad.mit.edu	37	17	40947469	40947469	+	3'UTR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55602078	55602078	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7653807	7653807	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD320	51293	broad.mit.edu	37	19	8367326	8367326	+	3'UTR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC45	8318	broad.mit.edu	37	22	19467788	19467788	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83251006	83251006	+	Silent	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19721433	19721433	+	Intron	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59159915	59159915	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60033812	60033812	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61689166	61689166	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26940270	26940271	+	Intron	INS	-	A	A	rs114288558		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEBPE	1053	broad.mit.edu	37	14	23587048	23587048	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35139351	35139351	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPA	1058	broad.mit.edu	37	2	27016112	27016112	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95277170	95277170	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50827817	50827817	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132646153	132646153	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61750240	61750240	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5903748	5903748	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5903866	5903866	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120166499	120166499	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150674582	150674582	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62286797	62286797	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21549926	21549926	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125281837	125281837	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103455195	103455195	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121219295	121219295	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93897339	93897339	+	Intron	SNP	A	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAMP1L	57585	broad.mit.edu	37	16	1720813	1720813	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2944597	2944597	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3174522	3174522	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	10973863	10973863	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39841183	39841183	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58522161	58522161	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90313576	90313576	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBR1	51163	broad.mit.edu	37	3	137886025	137886025	+	Silent	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50785465	50785465	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169169465	169169465	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB126	81623	broad.mit.edu	37	20	123362	123362	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKD	8527	broad.mit.edu	37	2	234363425	234363425	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137470406	137470406	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107856440	107856440	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107545717	107545717	+	Intron	SNP	A	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	4216648	4216648	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31718079	31718079	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21934331	21934331	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7720753	7720753	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21062989	21062989	+	Splice_Site	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38709724	38709724	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11660099	11660099	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153794387	153794387	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109050553	109050553	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL3	1809	broad.mit.edu	37	5	146792280	146792280	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41550814	41550814	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77424249	77424249	+	Intron	DEL	C	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36327259	36327259	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36366918	36366918	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50618208	50618208	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96952260	96952260	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXD2	55218	broad.mit.edu	37	14	69697154	69697154	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC9	5393	broad.mit.edu	37	4	122734376	122734376	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118986196	118986196	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72127797	72127797	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72218499	72218500	+	Intron	INS	-	T	T	rs138602964	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM102B	284611	broad.mit.edu	37	1	109155083	109155083	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM108B1	51104	broad.mit.edu	37	9	74481843	74481843	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM162B	221303	broad.mit.edu	37	6	117083327	117083327	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187615817	187615817	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68134105	68134105	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD5	60493	broad.mit.edu	37	20	3128000	3128001	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL14	144699	broad.mit.edu	37	12	1702092	1702092	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157716540	157716540	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128642802	128642802	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240389388	240389388	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN4	121643	broad.mit.edu	37	12	109719086	109719086	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52250113	52250113	+	Silent	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975066	44975066	+	Silent	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61901709	61901709	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39153585	39153585	+	Silent	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39261408	39261408	+	Intron	DEL	A	-	-	rs34116289		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151179577	151179577	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPA	2551	broad.mit.edu	37	21	27135345	27135345	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58010269	58010269	+	Silent	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB5	2709	broad.mit.edu	37	1	35223435	35223435	+	Silent	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB5	2709	broad.mit.edu	37	1	35223474	35223474	+	Silent	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB5	2709	broad.mit.edu	37	1	35223718	35223718	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42004993	42004993	+	Silent	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52420479	52420479	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNGT2	2793	broad.mit.edu	37	17	47284969	47284969	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45049583	45049583	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176883152	176883152	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135485478	135485478	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR124	25960	broad.mit.edu	37	8	37672453	37672453	+	Silent	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142689014	142689014	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR65	8477	broad.mit.edu	37	14	88477857	88477857	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89923211	89923211	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93743573	93743573	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94444107	94444107	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37272795	37272795	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104433432	104433433	+	Intron	DNP	GG	TT	TT			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66838662	66838662	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTK1	373156	broad.mit.edu	37	7	142962234	142962234	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144728256	144728256	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106810157	106810157	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21539615	21539616	+	Intron	INS	-	TA	TA	rs143282782	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS2	2998	broad.mit.edu	37	12	21727064	21727064	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAL	3034	broad.mit.edu	37	12	96367894	96367894	+	3'UTR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18624803	18624803	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197081790	197081790	+	Missense_Mutation	SNP	C	A	A	rs143511416		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32164278	32164278	+	5'Flank	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC6	55008	broad.mit.edu	37	4	89358911	89358911	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234749348	234749348	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26044045	26044045	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102552661	102552661	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPBP1	23640	broad.mit.edu	37	19	55789091	55789091	+	Nonsense_Mutation	SNP	C	A	A	rs147796402		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130417145	130417145	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130532628	130532628	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18562707	18562707	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IK	3550	broad.mit.edu	37	5	140037231	140037231	+	Silent	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102936672	102936672	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102965694	102965694	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15212219	15212219	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107977313	107977313	+	Silent	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3662735	3662735	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV1	27012	broad.mit.edu	37	8	110980784	110980784	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142639418	142639418	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0020	9933	broad.mit.edu	37	9	2812306	2812306	+	Silent	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34791651	34791651	+	Silent	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0895	23366	broad.mit.edu	37	7	36373501	36373501	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100103012	100103012	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20720242	20720242	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF11	8462	broad.mit.edu	37	2	10188051	10188051	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53004610	53004610	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT8	3856	broad.mit.edu	37	12	53311986	53311986	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744328	31744328	+	Silent	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	101013123	101013123	+	Intron	SNP	G	C	C	rs1566775	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS4	79603	broad.mit.edu	37	19	8292272	8292272	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1B	353132	broad.mit.edu	37	1	152785173	152785173	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE4A	199834	broad.mit.edu	37	1	152681701	152681701	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCTL	197021	broad.mit.edu	37	15	66850175	66850175	+	Silent	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS12	85329	broad.mit.edu	37	11	63279188	63279188	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104100480	104100480	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48660493	48660493	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55178058	55178058	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPK	643414	broad.mit.edu	37	10	90512289	90512289	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33910107	33910107	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100190940	100190940	broad.mit.edu	37	12	130527545	130527545	+	5'Flank	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106756949	106756949	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148001285	148001286	+	Intron	INS	-	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284233	284233	broad.mit.edu	37	18	14338246	14338246	+	RNA	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399959	399959	broad.mit.edu	37	11	122199752	122199752	+	Intron	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148947013	148947013	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148948880	148948881	+	Intron	INS	-	A	A	rs144249846		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21935329	21935329	+	RNA	SNP	G	A	A	rs148368397	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21938674	21938674	+	RNA	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91815387	91815387	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23145668	23145668	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT4	254531	broad.mit.edu	37	15	34651923	34651923	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62903541	62903541	+	Silent	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11945636	11945636	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197554193	197554193	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40486666	40486666	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42360569	42360569	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25488901	25488901	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC1	55227	broad.mit.edu	37	6	53787668	53787668	+	3'UTR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52860966	52860966	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92115266	92115266	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBR	4055	broad.mit.edu	37	12	6500211	6500211	+	3'UTR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235865990	235865990	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	48019469	48019469	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP1	9479	broad.mit.edu	37	11	45923771	45923771	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164528172	164528172	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126705823	126705823	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141782480	141782480	+	Intron	SNP	C	A	A	rs143574397	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519C	574466	broad.mit.edu	37	19	54189752	54189752	+	RNA	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR889	100126345	broad.mit.edu	37	14	101514209	101514210	+	5'Flank	DNP	CC	AA	AA			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151945107	151945107	+	Silent	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MR1	3140	broad.mit.edu	37	1	181003033	181003033	+	5'Flank	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAP2	112609	broad.mit.edu	37	6	84764910	84764910	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRF	116535	broad.mit.edu	37	11	68773708	68773708	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS23	51649	broad.mit.edu	37	17	55927331	55927331	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR6	9107	broad.mit.edu	37	13	25826298	25826298	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	236988655	236988655	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100532530	100532530	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9025727	9025727	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBBP1A	10514	broad.mit.edu	37	17	4445980	4445980	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10541666	10541666	+	Silent	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23901741	23901741	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109507749	109507750	+	Intron	DNP	GG	AT	AT			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26481991	26481991	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	102051510	102051510	+	5'UTR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15628980	15628980	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311565	145311565	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145075107	145075107	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145194931	145194934	+	Intron	DEL	CAAA	-	-	rs139628584		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145200637	145200637	+	Intron	SNP	T	G	G	rs2794183	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00164	554226	broad.mit.edu	37	2	133002082	133002082	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115856267	115856267	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29548866	29548866	+	Splice_Site	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24842414	24842414	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52514814	52514814	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL2	79815	broad.mit.edu	37	8	99274506	99274506	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55435298	55435298	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT2	9397	broad.mit.edu	37	10	15151295	15151295	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155726453	155726453	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69223111	69223111	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS1	4861	broad.mit.edu	37	19	47531212	47531212	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84498413	84498413	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5591951	5591951	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107856461	107856461	+	Intron	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131743680	131743680	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP37	79023	broad.mit.edu	37	12	102512215	102512215	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102342892	102342892	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228482444	228482444	+	Intron	SNP	G	T	T	rs142425864	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44713942	44713942	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OOEP	441161	broad.mit.edu	37	6	74079533	74079533	+	5'Flank	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154412190	154412190	+	Silent	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G4	390264	broad.mit.edu	37	11	123886970	123886970	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H4	390442	broad.mit.edu	37	14	20711024	20711024	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B2	81697	broad.mit.edu	37	6	27879546	27879546	+	Silent	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166871	248166871	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E8	390079	broad.mit.edu	37	11	5878565	5878565	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B12	390191	broad.mit.edu	37	11	58207392	58207392	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587141	55587141	+	Silent	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587801	55587801	+	Silent	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	55999704	55999704	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88346237	88346237	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA1	5033	broad.mit.edu	37	10	74834677	74834677	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVB	29780	broad.mit.edu	37	22	44543581	44543581	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX1	5087	broad.mit.edu	37	1	164811057	164811057	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140580679	140580679	+	Silent	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140557439	140557439	+	5'UTR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6IP	10015	broad.mit.edu	37	3	33870574	33870574	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144995542	144995542	+	5'Flank	DEL	C	-	-	rs60566131		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8A	5151	broad.mit.edu	37	15	85659375	85659375	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHX	8050	broad.mit.edu	37	11	34978962	34978962	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156877165	156877165	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX1	5189	broad.mit.edu	37	7	92131252	92131252	+	Nonsense_Mutation	SNP	G	A	A	rs61750417		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58350224	58350226	+	Intron	DEL	AGA	-	-	rs149851531		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGX	54965	broad.mit.edu	37	3	196449332	196449332	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNC1	26207	broad.mit.edu	37	17	65404807	65404807	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKIB	5570	broad.mit.edu	37	6	123022604	123022604	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32974305	32974305	+	Silent	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8626754	8626754	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1S1	55857	broad.mit.edu	37	20	21116985	21116985	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553789	19553789	+	Missense_Mutation	SNP	G	T	T	rs145666754		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19573133	19573133	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160605415	160605415	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12835027	12835027	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57265090	57265091	+	Intron	INS	-	T	T	rs145763494	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151261135	151261135	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23942908	23942908	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6546365	6546365	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45218371	45218371	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN1	5663	broad.mit.edu	37	14	73678425	73678425	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11574578	11574578	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198677466	198677466	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8319997	8319997	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62217042	62217042	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157691365	157691365	+	Silent	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71315196	71315196	+	5'Flank	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82751994	82751994	+	Intron	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD18	56852	broad.mit.edu	37	3	8940671	8940671	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178809098	178809098	+	Intron	SNP	T	C	C	rs150293796		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF1	2889	broad.mit.edu	37	9	134501637	134501637	+	Silent	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80390621	80390621	+	Intron	SNP	C	A	A	rs78331706	byFrequency;by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM20	282996	broad.mit.edu	37	10	112471960	112471960	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM33	155435	broad.mit.edu	37	7	155477837	155477837	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107052703	107052703	+	Splice_Site	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49573652	49573652	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155880486	155880486	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	44989965	44989965	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5P1	286140	broad.mit.edu	37	8	38458303	38458303	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124757359	124757359	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP2	79871	broad.mit.edu	37	1	92765680	92765680	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPIA	22934	broad.mit.edu	37	2	89034132	89034132	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL32P3	132241	broad.mit.edu	37	3	129120638	129120638	+	5'Flank	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPRD1B	58490	broad.mit.edu	37	20	36689064	36689064	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSL24D1	51187	broad.mit.edu	37	15	55489338	55489338	+	5'Flank	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92982958	92982958	+	Silent	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33785048	33785048	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33938383	33938383	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A4	6275	broad.mit.edu	37	1	153516257	153516257	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP1	9522	broad.mit.edu	37	5	77756645	77756650	+	Intron	DEL	TTTCTT	-	-	rs143615009		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38921358	38921358	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62045324	62045324	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52184399	52184399	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169580628	169580628	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERAC1	84947	broad.mit.edu	37	6	158549153	158549153	+	Silent	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERF2	10169	broad.mit.edu	37	15	44087757	44087757	+	3'UTR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94986177	94986177	+	5'Flank	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94942514	94942514	+	5'UTR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61390496	61390496	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155714676	155714676	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4B	387694	broad.mit.edu	37	10	82403855	82403855	+	3'UTR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148386236	148386236	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100883870	100883871	+	Intron	INS	-	CA	CA	rs145637738	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPD	128646	broad.mit.edu	37	20	1538148	1538148	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122822406	122822406	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A2	6567	broad.mit.edu	37	X	73698395	73698395	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A7	9194	broad.mit.edu	37	12	60165237	60165237	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25820094	25820094	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20037237	20037237	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119013910	119013910	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A17	51310	broad.mit.edu	37	14	23817863	23817863	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A6	9356	broad.mit.edu	37	11	62751994	62751994	+	Missense_Mutation	SNP	G	C	C	rs67264610		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107315392	107315392	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A12	154091	broad.mit.edu	37	6	134373718	134373718	+	5'UTR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118426084	118426085	+	Intron	DNP	CC	AA	AA			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A7	7922	broad.mit.edu	37	6	33170521	33170521	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20544378	20544378	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-18	767596	broad.mit.edu	37	14	101441213	101441214	+	5'Flank	DNP	TC	GT	GT			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51617005	51617006	+	Intron	DNP	CC	AA	AA			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108439436	108439436	+	Silent	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121435835	121435835	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS2	6655	broad.mit.edu	37	14	50667828	50667828	+	Intron	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A3	79644	broad.mit.edu	37	4	56236422	56236422	+	3'UTR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9113468	9113468	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5120439	5120439	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125482928	125482928	+	Silent	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4298381	4298381	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYF2	25949	broad.mit.edu	37	1	25553878	25553879	+	Intron	DEL	AC	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12224773	12224773	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64392128	64392129	+	Intron	DEL	TA	-	-	rs140764947		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R38	5726	broad.mit.edu	37	7	141673134	141673134	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114925186	114925186	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177555	89177555	+	Silent	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO3	55002	broad.mit.edu	37	13	114149925	114149925	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20097886	20097886	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125900255	125900255	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132C	92293	broad.mit.edu	37	12	129172168	129172168	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129749929	129749929	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMF1	7110	broad.mit.edu	37	3	69097285	69097285	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66360631	66360631	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10A	8797	broad.mit.edu	37	8	23076161	23076161	+	Intron	DEL	C	-	-	rs139383985		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11A	8792	broad.mit.edu	37	18	60051677	60051678	+	Intron	INS	-	CTC	CTC	rs146296467	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP1	10318	broad.mit.edu	37	5	150439923	150439923	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175355010	175355010	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOE1	114034	broad.mit.edu	37	1	45807214	45807214	+	Silent	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	C	C	rs121912666		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57157251	57157251	+	Intron	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81511927	81511927	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51744893	51744893	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC5	91875	broad.mit.edu	37	14	20764637	20764637	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91233276	91233276	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190908595	190908595	+	5'Flank	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYK2	7297	broad.mit.edu	37	19	10463083	10463083	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72093993	72093993	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBFD1	56061	broad.mit.edu	37	16	23573886	23573886	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138982695	138982695	+	3'UTR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCN3	114131	broad.mit.edu	37	10	5412326	5412326	+	Intron	SNP	A	G	G	rs147753415	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34790919	34790919	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33501226	33501226	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35541059	35541059	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167719510	167719510	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57640645	57640645	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78187556	78187556	+	Silent	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145110312	145110312	+	Intron	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10658652	10658652	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133520820	133520821	+	IGR	DEL	AT	-	-	rs11156562		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3087341	3087341	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42647809	42647809	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42656783	42656783	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	59657281	59657281	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65929809	65929809	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17574038	17574038	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18932450	18932450	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18978160	18978160	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27851109	27851109	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	32403434	32403434	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	33712459	33712459	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45591603	45591603	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49897824	49897824	+	IGR	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50039495	50039495	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55987356	55987356	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71375390	71375390	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79360795	79360795	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	92026222	92026222	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95145601	95145601	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	103366272	103366272	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115337582	115337582	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115449864	115449864	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127835840	127835841	+	IGR	DEL	AG	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	28068641	28068641	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43118150	43118150	+	IGR	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73493799	73493799	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75028592	75028592	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80633155	80633155	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80651172	80651173	+	IGR	DNP	GG	TT	TT			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	89528858	89528859	+	IGR	INS	-	A	A	rs145267882	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	92376574	92376574	+	IGR	SNP	A	C	C	rs77107545	byFrequency;by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19745012	19745012	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19745047	19745047	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19988211	19988211	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	28681574	28681574	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52075855	52075855	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53586808	53586809	+	IGR	DNP	GG	TT	TT			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64499739	64499739	+	IGR	SNP	C	T	T	rs111518676		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73009968	73009968	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	80979036	80979036	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27179781	27179781	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44547154	44547154	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	51903479	51903479	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	70943722	70943722	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85697467	85697467	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87348559	87348559	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87351354	87351354	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96308574	96308574	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97787319	97787319	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97977776	97977776	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98313080	98313080	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79529712	79529712	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88879843	88879843	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	98089552	98089553	+	IGR	DNP	CC	AA	AA			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32152214	32152214	+	IGR	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33944965	33944965	+	IGR	SNP	C	T	T	rs146565417	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46469943	46469943	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46492387	46492387	+	IGR	SNP	T	A	A	rs112654586		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55762146	55762146	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55780776	55780776	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55817568	55817568	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58811575	58811575	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79336141	79336141	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79359515	79359515	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21545312	21545312	+	IGR	DEL	C	-	-	rs79903683		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25274181	25274181	+	IGR	SNP	A	G	G	rs76891701		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25274188	25274188	+	IGR	SNP	A	T	T	rs79633270		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25297282	25297282	+	IGR	SNP	C	A	A	rs140008629		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30393217	30393217	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30423846	30423846	+	IGR	DEL	C	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	31307958	31307958	+	IGR	DEL	C	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68913591	68913591	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11189090	11189090	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14214229	14214229	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15168228	15168228	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	42731299	42731299	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	4900670	4900670	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5890098	5890098	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65004126	65004126	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71192578	71192578	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	72848972	72848972	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	74945938	74945938	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29281832	29281832	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43174514	43174514	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44914883	44914883	+	IGR	SNP	T	C	C	rs145619131	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	11407642	11407642	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152611430	152611430	+	IGR	DEL	T	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153132680	153132680	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163680530	163680530	+	IGR	DEL	C	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181820557	181820557	+	IGR	DEL	A	-	-	rs35798068		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	184750443	184750443	+	IGR	DEL	T	-	-	rs34194179		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194158977	194158977	+	IGR	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208493211	208493211	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208621690	208621690	+	IGR	DEL	T	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219481255	219481255	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228822323	228822323	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	232717996	232717996	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233680353	233680353	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96912693	96912693	+	IGR	DEL	G	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10367139	10367139	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	1075929	1075929	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18225859	18225859	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23635503	23635503	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23705578	23705578	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23762861	23762861	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29597167	29597167	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29600260	29600260	+	IGR	SNP	C	T	T	rs142253187	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29604023	29604023	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37884627	37884627	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38003471	38003471	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49947725	49947726	+	IGR	INS	-	G	G	rs149719026	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10886264	10886264	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	43612440	43612440	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9848185	9848185	+	IGR	SNP	C	T	T	rs78913844	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16405711	16405711	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16943523	16943523	+	IGR	SNP	G	A	A	rs138786390	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	24187006	24187006	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122059002	122059002	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132775578	132775578	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133058518	133058518	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140498158	140498158	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143875098	143875098	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	149621268	149621268	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	19989605	19989605	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	236396936	236396936	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36129707	36129707	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72058610	72058610	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90458780	90458780	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91662763	91662763	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92028720	92028720	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92258490	92258490	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	139618523	139618523	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140632615	140632615	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140910189	140910189	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146845989	146845989	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149935563	149935563	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	158638365	158638365	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192922572	192922573	+	IGR	INS	-	G	G	rs151299437	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	19620347	19620347	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	21346971	21346972	+	IGR	INS	-	A	A	rs144803897	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40538610	40538613	+	IGR	DEL	GCGC	-	-	rs71618941		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166585536	166585536	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17460279	17460279	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190680795	190680795	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191027776	191027776	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191030877	191030877	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43882525	43882525	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49261917	49261917	+	IGR	SNP	C	T	T	rs111541462		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49261957	49261957	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	80521805	80521805	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9404948	9404948	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9404950	9404950	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	109379351	109379351	+	IGR	DEL	T	-	-	rs112368629		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110898417	110898417	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	146522507	146522507	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15220045	15220045	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152423549	152423549	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16420407	16420407	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174350861	174350861	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24786973	24786973	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2542160	2542160	+	IGR	DEL	G	-	-	rs34517067		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44119407	44119407	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50711890	50711890	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	65741972	65741972	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	66570109	66570109	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8903785	8903785	+	IGR	DEL	G	-	-	rs150816561		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	105114698	105114698	+	IGR	DEL	C	-	-	rs141510133		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	12665894	12665895	+	IGR	INS	-	T	T	rs143903935	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	14395029	14395030	+	IGR	INS	-	C	C	rs151158867	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	169690521	169690521	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25272623	25272623	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25732180	25732180	+	IGR	SNP	A	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	26342686	26342687	+	IGR	DEL	AG	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28283521	28283521	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	4465566	4465566	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	47797980	47797980	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58575018	58575018	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	62033629	62033629	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63554257	63554258	+	IGR	INS	-	AAA	AAA			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	68890698	68890699	+	IGR	DEL	AG	-	-	rs144531004		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82988039	82988039	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98418797	98418797	+	IGR	DEL	T	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140916539	140916539	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143744044	143744044	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15157206	15157206	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25526234	25526234	+	IGR	DEL	C	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36838381	36838381	+	IGR	SNP	C	T	T	rs80166272	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53224588	53224588	+	IGR	SNP	A	C	C	rs149413585	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61825504	61825504	+	IGR	SNP	G	A	A	rs140085033	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61825824	61825824	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76688408	76688408	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105956212	105956212	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108596866	108596866	+	IGR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	122066831	122066831	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126657347	126657347	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134338545	134338545	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134416163	134416163	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134741180	134741180	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	135063438	135063438	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23508469	23508469	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	32729649	32729649	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50752294	50752294	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98457055	98457055	+	IGR	DEL	A	-	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98468869	98468869	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	102044519	102044519	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	110803790	110803790	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122169958	122169958	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13021883	13021883	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1346180	1346180	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25902817	25902818	+	IGR	DNP	GG	TT	TT			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26273875	26273875	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32087834	32087834	+	IGR	DEL	G	-	-	rs150321195		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44114905	44114905	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	59270	59270	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357313	68357313	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68405913	68405913	+	IGR	SNP	G	T	T	rs150595338	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68424525	68424525	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68468587	68468587	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68473466	68473466	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68484402	68484402	+	IGR	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78436557	78436557	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92848724	92848724	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115239389	115239389	+	IGR	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124461183	124461183	+	IGR	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133656919	133656919	+	IGR	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137077972	137077972	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150269037	150269037	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	42201047	42201047	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63643017	63643017	+	IGR	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84919033	84919033	+	IGR	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97126106	97126106	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	99502735	99502735	+	IGR	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13446563	13446563	+	IGR	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9934778	9934778	+	IGR	SNP	A	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155163239	155163239	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR1	7433	broad.mit.edu	37	3	42577577	42577577	+	Intron	SNP	C	T	T	rs116429753	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6122594	6122594	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177061070	177061070	+	Missense_Mutation	SNP	G	C	C	rs138006002	byFrequency	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241959664	241959664	+	Missense_Mutation	SNP	C	A	A	rs142269497		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141408496	141408496	+	5'UTR	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141414021	141414021	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108604279	108604279	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31604603	31604603	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56378673	56378673	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28145144	28145144	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180800104	180800104	+	Intron	DEL	A	-	-	rs35823570		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100363097	100363097	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114069589	114069589	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP1	162239	broad.mit.edu	37	16	75200864	75200864	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286884	57286884	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF202	7753	broad.mit.edu	37	11	123598271	123598271	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154763	22154763	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF222	7673	broad.mit.edu	37	19	44530046	44530046	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81582794	81582794	+	Silent	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84519528	84519528	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF721	170960	broad.mit.edu	37	4	436825	436825	+	Silent	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185801643	185801643	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZUFSP	221302	broad.mit.edu	37	6	116964537	116964537	+	Intron	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3952950	3952950	+	Intron	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30942243	30942243	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22421734	22421734	+	Intron	SNP	T	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20602750	20602751	+	Intron	INS	-	A	A	rs141852156		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20806089	20806089	+	RNA	SNP	C	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35379085	35379085	+	5'Flank	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142648438	142648438	+	Intron	SNP	A	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142790778	142790778	+	Intron	SNP	G	A	A	rs77132230		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143128127	143128127	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159402168	159402168	+	Intron	SNP	C	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16890195	16890195	+	5'Flank	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89384823	89384823	+	RNA	SNP	C	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89416835	89416835	+	RNA	SNP	G	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90258823	90258823	+	Intron	SNP	G	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90420082	90420082	+	Intron	SNP	G	A	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190845788	190845788	+	Intron	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9241843	9241843	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	1513882	1513882	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66461584	66461584	+	Intron	SNP	T	C	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
