Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
RERE	473	broad.mit.edu	37	1	8416169	8416169	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:8416169G>T	uc001ape.2	-	22	5287	c.4477C>A	c.(4477-4479)CCA>ACA	p.P1493T	RERE_uc001apf.2_Missense_Mutation_p.P1493T|RERE_uc001apd.2_Missense_Mutation_p.P939T	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1493	Pro-rich.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		CCGAAAACTGGGTGGCGAAGC	0.587													6	85	---	---	---	---	PASS
PRAMEF12	390999	broad.mit.edu	37	1	12835767	12835767	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:12835767C>A	uc001aui.2	+	2	396	c.369C>A	c.(367-369)TCC>TCA	p.S123S		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	123										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGCACTCTCCCCAGAGGCCC	0.537													6	109	---	---	---	---	PASS
PIK3R3	8503	broad.mit.edu	37	1	46511683	46511683	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:46511683C>A	uc001cpb.3	-	9	1850	c.1094G>T	c.(1093-1095)CGA>CTA	p.R365L	PIK3R3_uc009vyb.2_Missense_Mutation_p.R306L|PIK3R3_uc009vyc.2_Missense_Mutation_p.R382L|PIK3R3_uc001cpc.3_Missense_Mutation_p.R365L|PIK3R3_uc010olw.1_Missense_Mutation_p.R411L|PIK3R3_uc010olv.1_Missense_Mutation_p.R155L	NM_003629	NP_003620	Q92569	P55G_HUMAN	phosphoinositide-3-kinase, regulatory subunit 3	365	SH2 2.				insulin receptor signaling pathway|platelet activation|T cell costimulation		1-phosphatidylinositol-3-kinase activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					TGCTTGTACTCGATTGATATC	0.373													4	81	---	---	---	---	PASS
SLC5A9	200010	broad.mit.edu	37	1	48701497	48701497	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:48701497T>C	uc001cro.2	+	10	1290	c.1238T>C	c.(1237-1239)GTG>GCG	p.V413A	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Missense_Mutation_p.V438A|SLC5A9_uc010omt.1_Missense_Mutation_p.V427A|SLC5A9_uc001crp.2_Missense_Mutation_p.V80A|SLC5A9_uc010omu.1_Missense_Mutation_p.V80A	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	413	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						ACCATTGATGTGTGGCAGCGC	0.617													15	34	---	---	---	---	PASS
PRPF38A	84950	broad.mit.edu	37	1	52870481	52870481	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:52870481G>T	uc001ctv.3	+	1	263	c.60G>T	c.(58-60)CTG>CTT	p.L20L	ORC1L_uc001ctt.2_5'Flank|ORC1L_uc010oni.1_5'Flank|ORC1L_uc001ctu.2_5'Flank|ORC1L_uc009vzd.2_5'Flank|PRPF38A_uc001ctw.3_5'UTR	NM_032864	NP_116253	Q8NAV1	PR38A_HUMAN	PRP38 pre-mRNA processing factor 38 (yeast)	20					mRNA processing|RNA splicing	spliceosomal complex					0						CTCAATATCTGGTGGAGAAGA	0.483											OREG0013487	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	115	---	---	---	---	PASS
USP24	23358	broad.mit.edu	37	1	55572963	55572963	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:55572963G>A	uc001cyg.3	-	37	4231	c.4231C>T	c.(4231-4233)CGC>TGC	p.R1411C		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1571					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						TTGATGAGGCGTAAGTGCCCT	0.453													19	46	---	---	---	---	PASS
GBP2	2634	broad.mit.edu	37	1	89579960	89579960	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:89579960C>T	uc001dmz.1	-	7	1159	c.888G>A	c.(886-888)CTG>CTA	p.L296L	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	296					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		TGACGTAGGTCAGCACCAGGC	0.483													8	48	---	---	---	---	PASS
GLMN	11146	broad.mit.edu	37	1	92733508	92733508	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:92733508G>T	uc001dor.2	-	11	1175	c.1060C>A	c.(1060-1062)CAG>AAG	p.Q354K	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Missense_Mutation_p.Q354K	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	354					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		TCTAAGTACTGGTAAAGTAGA	0.313									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				5	68	---	---	---	---	PASS
SORT1	6272	broad.mit.edu	37	1	109883449	109883449	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:109883449G>A	uc001dxm.1	-	10	1210	c.1161C>T	c.(1159-1161)TCC>TCT	p.S387S	SORT1_uc010ovi.1_Silent_p.S250S	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	387	BNR 6.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		CCAAAGACTTGGAATAGACAA	0.483													8	42	---	---	---	---	PASS
ATXN7L2	127002	broad.mit.edu	37	1	110033990	110033990	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:110033990C>T	uc001dxr.2	+	10	1820	c.1805C>T	c.(1804-1806)TCG>TTG	p.S602L	ATXN7L2_uc001dxs.2_Missense_Mutation_p.S229L|ATXN7L2_uc001dxt.2_Missense_Mutation_p.S105L|CYB561D1_uc010ovl.1_5'Flank|CYB561D1_uc010ovm.1_5'Flank|CYB561D1_uc001dxu.2_5'Flank|CYB561D1_uc001dxw.2_5'Flank|CYB561D1_uc010ovn.1_5'Flank|CYB561D1_uc010ovo.1_5'Flank|CYB561D1_uc009wfd.2_5'Flank|CYB561D1_uc010ovp.1_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	602										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		AGGGGCCTCTCGGCCAAAACT	0.587													10	45	---	---	---	---	PASS
KCNA3	3738	broad.mit.edu	37	1	111216270	111216270	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:111216270C>G	uc001dzv.1	-	1	1386	c.1162G>C	c.(1162-1164)GGG>CGG	p.G388R		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	388						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGCGTTTGCCCGAGGATCTGC	0.587													13	71	---	---	---	---	PASS
C1orf88	128344	broad.mit.edu	37	1	111891246	111891246	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:111891246C>A	uc001eaw.2	+	4	447	c.367C>A	c.(367-369)CCA>ACA	p.P123T	C1orf88_uc001eax.2_Missense_Mutation_p.P90T|C1orf88_uc009wge.1_Intron|C1orf88_uc001eay.2_Missense_Mutation_p.P36T	NM_181643	NP_857594	Q8TCI5	CA088_HUMAN	hypothetical protein LOC128344	123										ovary(1)|skin(1)	2		all_cancers(81;3.21e-05)|all_epithelial(167;1.19e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0239)|Colorectal(144;0.0301)|all cancers(265;0.0677)|Epithelial(280;0.0897)|COAD - Colon adenocarcinoma(174;0.116)|LUSC - Lung squamous cell carcinoma(189;0.135)		TAAGAACTACCCAAAGGACAC	0.403													9	255	---	---	---	---	PASS
ANKRD35	148741	broad.mit.edu	37	1	145562806	145562806	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:145562806C>A	uc001eob.1	+	10	2602	c.2494C>A	c.(2494-2496)CTA>ATA	p.L832I	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.L675I	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	832										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGCAGCCAGCCTACGGCAACA	0.602													4	8	---	---	---	---	PASS
PLEKHO1	51177	broad.mit.edu	37	1	150131510	150131510	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:150131510G>C	uc001ett.2	+	6	1300	c.1022G>C	c.(1021-1023)CGG>CCG	p.R341P	PLEKHO1_uc001etr.2_Missense_Mutation_p.R169P|PLEKHO1_uc001ets.2_Missense_Mutation_p.R158P|PLEKHO1_uc001etu.2_Missense_Mutation_p.R169P	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	341	Negative regulator of AP-1 activity.					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GACCCCCCTCGGTCTCCGCCG	0.602													6	28	---	---	---	---	PASS
GOLPH3L	55204	broad.mit.edu	37	1	150634405	150634405	+	Splice_Site	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:150634405C>A	uc001evj.2	-	4	533	c.316_splice	c.e4-1	p.V106_splice	GOLPH3L_uc010pci.1_Splice_Site_p.V62_splice	NM_018178	NP_060648	Q9H4A5	GLP3L_HUMAN	Golgi phosphoprotein 3-like							Golgi cisterna membrane				ovary(1)	1	all_cancers(9;3.09e-52)|all_epithelial(9;4.47e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000615)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;1.2e-23)|all cancers(9;4.81e-23)|OV - Ovarian serous cystadenocarcinoma(6;1.93e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			TTAGCAGTACCTTTGAGAAAA	0.363													5	60	---	---	---	---	PASS
PSMB4	5692	broad.mit.edu	37	1	151372089	151372089	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:151372089C>T	uc001eyc.1	+	1	49	c.26C>T	c.(25-27)TCC>TTC	p.S9F	PSMB4_uc010pda.1_Missense_Mutation_p.S9F|PSMB4_uc001eyb.1_Missense_Mutation_p.S9F	NM_002796	NP_002787	P28070	PSB4_HUMAN	proteasome beta 4 subunit	9					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GGGTCGCGGTCCGGACTTTGG	0.552													12	67	---	---	---	---	PASS
FLG	2312	broad.mit.edu	37	1	152276145	152276145	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:152276145G>A	uc001ezu.1	-	3	11253	c.11217C>T	c.(11215-11217)CAC>CAT	p.H3739H		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3739	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGCCTGCTCGTGGCGGGATC	0.602									Ichthyosis				87	127	---	---	---	---	PASS
FLG2	388698	broad.mit.edu	37	1	152326835	152326835	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:152326835G>C	uc001ezw.3	-	3	3500	c.3427C>G	c.(3427-3429)CAG>GAG	p.Q1143E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1143	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TACTCATGCTGTGCAAAGCCA	0.527													23	147	---	---	---	---	PASS
IQGAP3	128239	broad.mit.edu	37	1	156503909	156503909	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:156503909C>T	uc001fpf.2	-	30	3840	c.3765G>A	c.(3763-3765)CAG>CAA	p.Q1255Q		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1255					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCTCTGGCACCTGGCAGGCTC	0.592													7	52	---	---	---	---	PASS
FCRL1	115350	broad.mit.edu	37	1	157771327	157771327	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:157771327G>T	uc001frg.2	-	6	1040	c.927C>A	c.(925-927)GTC>GTA	p.V309V	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Silent_p.V309V|FCRL1_uc001fri.2_Intron|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	309	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCCCCTCAATGACTCCTGAGG	0.507													17	37	---	---	---	---	PASS
OR10J1	26476	broad.mit.edu	37	1	159409868	159409868	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:159409868G>T	uc010piv.1	+	1	320	c.320G>T	c.(319-321)GGG>GTG	p.G107V	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	107	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TCATTGGCAGGGTGTGCCACA	0.493													5	34	---	---	---	---	PASS
FCGR3A	2214	broad.mit.edu	37	1	161518412	161518412	+	Nonsense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:161518412T>A	uc001gat.3	-	4	255	c.118A>T	c.(118-120)AAG>TAG	p.K40*	FCGR3A_uc001gar.2_Nonsense_Mutation_p.K76*|FCGR3A_uc001gas.2_Nonsense_Mutation_p.K75*|FCGR3A_uc009wuh.2_Nonsense_Mutation_p.K39*|FCGR3A_uc009wui.2_Nonsense_Mutation_p.K40*	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	40	Ig-like C2-type 1.|Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	ACACTGTCCTTCTCGAGCACC	0.552													17	66	---	---	---	---	PASS
BLZF1	8548	broad.mit.edu	37	1	169356240	169356240	+	Silent	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:169356240A>G	uc001gfx.1	+	7	1460	c.1023A>G	c.(1021-1023)CTA>CTG	p.L341L	BLZF1_uc001gfy.2_Silent_p.L341L|BLZF1_uc009wvp.1_Silent_p.*245*	NM_003666	NP_003657	Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	341					cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			skin(1)	1	all_hematologic(923;0.208)					CTTAGGTTCTAAGAATTTTAG	0.328													4	36	---	---	---	---	PASS
C1orf125	126859	broad.mit.edu	37	1	179503957	179503957	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:179503957A>T	uc001gmo.2	+	25	3018	c.2891A>T	c.(2890-2892)GAG>GTG	p.E964V	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E890V|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	964	Glu-rich.										0						AAAGATCTAGAGGAATTAGTC	0.244													6	46	---	---	---	---	PASS
CEP350	9857	broad.mit.edu	37	1	179966093	179966093	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:179966093C>A	uc001gnt.2	+	6	1184	c.801C>A	c.(799-801)TCC>TCA	p.S267S	CEP350_uc001gnr.1_Silent_p.S241S|CEP350_uc009wxl.2_Silent_p.S266S|CEP350_uc001gnu.2_Silent_p.S101S	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	267						centrosome|nucleus|spindle				ovary(4)	4						CTTCTAATTCCCAAAGATTAG	0.378													7	84	---	---	---	---	PASS
PRG4	10216	broad.mit.edu	37	1	186276847	186276847	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:186276847C>A	uc001gru.3	+	7	2047	c.1996C>A	c.(1996-1998)CCC>ACC	p.P666T	PRG4_uc001grt.3_Missense_Mutation_p.P625T|PRG4_uc009wyl.2_Missense_Mutation_p.P573T|PRG4_uc009wym.2_Missense_Mutation_p.P532T|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	666	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|38; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GGAGCCTGCTCCCACCACTCC	0.667													5	52	---	---	---	---	PASS
ATP6V1G3	127124	broad.mit.edu	37	1	198509707	198509707	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:198509707G>C	uc001gup.2	-	2	180	c.74C>G	c.(73-75)GCC>GGC	p.A25G	ATP6V1G3_uc009wzd.2_Missense_Mutation_p.A25G|ATP6V1G3_uc001guo.2_Missense_Mutation_p.A25G	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	25	Potential.				cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						ACTCTTCTTGGCTTCCTCTAG	0.378													18	59	---	---	---	---	PASS
LAX1	54900	broad.mit.edu	37	1	203741202	203741202	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:203741202A>G	uc001haa.2	+	4	727	c.317A>G	c.(316-318)CAT>CGT	p.H106R	LAX1_uc010pql.1_Missense_Mutation_p.H90R|LAX1_uc001hab.2_Missense_Mutation_p.H30R	NM_017773	NP_060243	Q8IWV1	LAX1_HUMAN	lymphocyte transmembrane adaptor 1 isoform a	106	Cytoplasmic (Potential).				B cell activation|immune response|inactivation of MAPK activity|intracellular signal transduction|negative regulation of T cell activation	Golgi apparatus|integral to membrane|plasma membrane	protein kinase binding|SH2 domain binding			central_nervous_system(2)	2	all_cancers(21;0.0915)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TCAGGGAGACATGAGTCGAGG	0.493													23	41	---	---	---	---	PASS
IARS2	55699	broad.mit.edu	37	1	220287687	220287687	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:220287687G>T	uc001hmc.2	+	12	1615	c.1511G>T	c.(1510-1512)GGA>GTA	p.G504V		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	504					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TTTATTCCTGGATCAGCACTG	0.373													34	71	---	---	---	---	PASS
HHIPL2	79802	broad.mit.edu	37	1	222717191	222717191	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:222717191G>C	uc001hnh.1	-	2	720	c.662C>G	c.(661-663)TCC>TGC	p.S221C		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	221					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		ATGGACCATGGAGACGGGGTT	0.637													13	32	---	---	---	---	PASS
KIAA1804	84451	broad.mit.edu	37	1	233497839	233497839	+	Missense_Mutation	SNP	T	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:233497839T>G	uc001hvt.3	+	5	1613	c.1352T>G	c.(1351-1353)CTG>CGG	p.L451R	KIAA1804_uc001hvs.1_Missense_Mutation_p.L451R	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	451					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CGGGCGGCTCTGCAGCAGAAG	0.582													4	8	---	---	---	---	PASS
RGS7	6000	broad.mit.edu	37	1	240966246	240966246	+	Silent	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:240966246T>A	uc001hyv.2	-	16	1647	c.1317A>T	c.(1315-1317)ATA>ATT	p.I439I	RGS7_uc010pyh.1_Silent_p.I413I|RGS7_uc010pyj.1_Silent_p.I355I|RGS7_uc001hyu.2_Silent_p.I439I|RGS7_uc009xgn.1_Silent_p.I386I|RGS7_uc001hyw.2_Silent_p.I439I|RGS7_uc001hyt.2_Silent_p.I271I	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	439	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CACTGGATCTTATAAAACGTG	0.348													36	59	---	---	---	---	PASS
RGS7	6000	broad.mit.edu	37	1	241033393	241033393	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:241033393G>T	uc001hyv.2	-	7	742	c.412C>A	c.(412-414)CAA>AAA	p.Q138K	RGS7_uc010pyh.1_Missense_Mutation_p.Q112K|RGS7_uc010pyj.1_Missense_Mutation_p.Q54K|RGS7_uc001hyu.2_Missense_Mutation_p.Q138K|RGS7_uc009xgn.1_Missense_Mutation_p.Q85K|RGS7_uc001hyw.2_Missense_Mutation_p.Q138K|RGS7_uc001hyt.2_5'Flank	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	138					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GCCTTGTTTTGCATTGTTCTC	0.428													32	60	---	---	---	---	PASS
SMYD3	64754	broad.mit.edu	37	1	246078937	246078937	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:246078937G>T	uc001ibl.2	-	8	803	c.708C>A	c.(706-708)ACC>ACA	p.T236T	SMYD3_uc001ibk.2_Silent_p.T177T|SMYD3_uc001ibi.2_Silent_p.T47T|SMYD3_uc001ibj.2_Silent_p.T47T	NM_022743	NP_073580	Q9H7B4	SMYD3_HUMAN	SET and MYND domain containing 3	236	SET.					cytoplasm|nucleus	histone-lysine N-methyltransferase activity|protein binding|zinc ion binding				0	all_cancers(71;0.000291)|all_epithelial(71;0.000174)|Ovarian(71;0.0377)|all_lung(81;0.0568)|Lung NSC(105;0.0804)|Breast(184;0.173)|Melanoma(84;0.242)	all_cancers(173;0.0496)|Acute lymphoblastic leukemia(190;0.164)	OV - Ovarian serous cystadenocarcinoma(106;0.0129)	all cancers(4;0.028)|GBM - Glioblastoma multiforme(49;0.0537)		GGTAGCAGATGGTGAGCTGTG	0.473													6	53	---	---	---	---	PASS
NLRP3	114548	broad.mit.edu	37	1	247588746	247588746	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:247588746C>A	uc001icr.2	+	5	2139	c.2001C>A	c.(1999-2001)TCC>TCA	p.S667S	NLRP3_uc001ics.2_Silent_p.S667S|NLRP3_uc001icu.2_Silent_p.S667S|NLRP3_uc001icw.2_Silent_p.S667S|NLRP3_uc001icv.2_Silent_p.S667S|NLRP3_uc010pyw.1_Silent_p.S665S|NLRP3_uc001ict.1_Silent_p.S665S	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	667					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGGTTTCTTCCTTTTGCATTG	0.512													5	36	---	---	---	---	PASS
OR14A16	284532	broad.mit.edu	37	1	247978831	247978831	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:247978831C>A	uc001idm.1	-	1	201	c.201G>T	c.(199-201)TTG>TTT	p.L67F		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGCAGAGATCCAAGAAAGATA	0.433													5	76	---	---	---	---	PASS
OR2L13	284521	broad.mit.edu	37	1	248263099	248263099	+	Missense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:248263099T>A	uc001ids.2	+	3	759	c.422T>A	c.(421-423)GTG>GAG	p.V141E		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			ATGATGTGTGTGAAGATGATT	0.488													41	132	---	---	---	---	PASS
OR2M3	127062	broad.mit.edu	37	1	248367107	248367107	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:248367107G>T	uc010pzg.1	+	1	738	c.738G>T	c.(736-738)TTG>TTT	p.L246F		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTCACCTCTTGGTGGTGGGAA	0.483													18	128	---	---	---	---	PASS
OR2T1	26696	broad.mit.edu	37	1	248570351	248570351	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:248570351G>T	uc010pzm.1	+	1	1056	c.1056G>T	c.(1054-1056)AAG>AAT	p.K352N		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	352	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAGCTCTGAAGAGGGCCTTGG	0.517													7	132	---	---	---	---	PASS
OR2T27	403239	broad.mit.edu	37	1	248814146	248814146	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr1:248814146G>A	uc010pzo.1	-	1	40	c.40C>T	c.(40-42)CTT>TTT	p.L14F		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AAACCCAGAAGGATAAAGTCG	0.448													8	41	---	---	---	---	PASS
TSSC1	7260	broad.mit.edu	37	2	3197910	3197910	+	Missense_Mutation	SNP	G	T	T	rs148611386	by1000genomes	TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:3197910G>T	uc002qxj.2	-	7	874	c.681C>A	c.(679-681)CAC>CAA	p.H227Q	TSSC1_uc002qxi.2_RNA	NM_003310	NP_003301	Q53HC9	TSSC1_HUMAN	tumor suppressing subtransferable candidate 1	227	WD 3.						protein binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.212)		OV - Ovarian serous cystadenocarcinoma(76;0.00877)|Epithelial(75;0.0283)|all cancers(51;0.0464)		CCAGCTGTCCGTGGGCATTCT	0.507													4	87	---	---	---	---	PASS
DDX1	1653	broad.mit.edu	37	2	15770902	15770902	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:15770902G>T	uc002rce.2	+	26	2383	c.2095G>T	c.(2095-2097)GGA>TGA	p.G699*		NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	699	Necessary for interaction with HNRNPK.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		TGATGCAGGTGGAAGCTATAA	0.403													7	175	---	---	---	---	PASS
APOB	338	broad.mit.edu	37	2	21255260	21255260	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:21255260C>A	uc002red.2	-	10	1446	c.1318G>T	c.(1318-1320)GCC>TCC	p.A440S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	440	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TACAAGGTGGCTCGGCTGCGC	0.562													31	48	---	---	---	---	PASS
C2orf71	388939	broad.mit.edu	37	2	29296003	29296003	+	Silent	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:29296003T>C	uc002rmt.1	-	1	1125	c.1125A>G	c.(1123-1125)CCA>CCG	p.P375P		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	375					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTTCGGGCTCTGGTGCAAGGT	0.577													12	39	---	---	---	---	PASS
NLRC4	58484	broad.mit.edu	37	2	32449823	32449823	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:32449823C>A	uc002roi.2	-	9	3040	c.2794G>T	c.(2794-2796)GGA>TGA	p.G932*	NLRC4_uc002roj.1_Nonsense_Mutation_p.G932*|NLRC4_uc010ezt.1_Nonsense_Mutation_p.G267*	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	932	LRR 11.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GGGTTCTTTCCAAAAAATGCA	0.328													5	55	---	---	---	---	PASS
LTBP1	4052	broad.mit.edu	37	2	33246006	33246006	+	Missense_Mutation	SNP	G	T	T	rs148571124		TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:33246006G>T	uc002ros.2	+	3	596	c.596G>T	c.(595-597)GGG>GTG	p.G199V		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	199	EGF-like 1.				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CAGAATGGAGGGATGTGTCTC	0.488													9	259	---	---	---	---	PASS
HEATR5B	54497	broad.mit.edu	37	2	37283723	37283723	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:37283723C>A	uc002rpp.1	-	16	2355	c.2259G>T	c.(2257-2259)CTG>CTT	p.L753L		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	753							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GATCATGCTCCAGAGCCCCAC	0.448													6	139	---	---	---	---	PASS
GALM	130589	broad.mit.edu	37	2	38956735	38956735	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:38956735G>T	uc002rqy.2	+	5	924	c.672G>T	c.(670-672)CTG>CTT	p.L224L		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	224					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				CATTCGACCTGAGAAAGCCAG	0.443													6	110	---	---	---	---	PASS
C2orf61	285051	broad.mit.edu	37	2	47357337	47357337	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:47357337G>T	uc002rvs.2	-	4	589	c.462C>A	c.(460-462)TCC>TCA	p.S154S	C2orf61_uc010fbd.2_RNA|C2orf61_uc010yog.1_Silent_p.S154S	NM_173649	NP_775920	Q8N801	CB061_HUMAN	hypothetical protein LOC285051 isoform 2	154											0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			ATAATTACCTGGAAGCATATT	0.403													6	60	---	---	---	---	PASS
NRXN1	9378	broad.mit.edu	37	2	50318467	50318467	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:50318467G>T	uc010fbp.2	-	3	1414	c.607C>A	c.(607-609)CCT>ACT	p.P203T	NRXN1_uc002rxb.3_Missense_Mutation_p.P910T|NRXN1_uc010fbq.2_Missense_Mutation_p.P1278T|NRXN1_uc002rxe.3_Missense_Mutation_p.P1238T	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	203	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TTACCTGCAGGGTAGCGCTCG	0.448													9	176	---	---	---	---	PASS
ERLEC1	27248	broad.mit.edu	37	2	54036405	54036405	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:54036405C>A	uc002rxl.2	+	10	1376	c.1096C>A	c.(1096-1098)CAT>AAT	p.H366N	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Missense_Mutation_p.H366N|ERLEC1_uc002rxn.2_Missense_Mutation_p.H312N	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	366	PRKCSH 2.				ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						ACATCAATACCATGAGGTATA	0.318													5	78	---	---	---	---	PASS
PUS10	150962	broad.mit.edu	37	2	61194650	61194650	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:61194650G>T	uc010fci.2	-	6	662	c.602C>A	c.(601-603)CCC>CAC	p.P201H	PUS10_uc002sao.2_Missense_Mutation_p.P201H|PUS10_uc010ypk.1_5'UTR	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10	201					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			TCCATCAATGGGAACACCCAG	0.383													7	153	---	---	---	---	PASS
PUS10	150962	broad.mit.edu	37	2	61194689	61194689	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:61194689C>A	uc010fci.2	-	6	623	c.563G>T	c.(562-564)TGG>TTG	p.W188L	PUS10_uc002sao.2_Missense_Mutation_p.W188L|PUS10_uc010ypk.1_5'UTR	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10	188					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			GTGAGTTATCCATTTGTAGGC	0.363													8	208	---	---	---	---	PASS
ALMS1	7840	broad.mit.edu	37	2	73678881	73678881	+	Nonsense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:73678881C>T	uc002sje.1	+	10	5341	c.5230C>T	c.(5230-5232)CAA>TAA	p.Q1744*	ALMS1_uc002sjf.1_Nonsense_Mutation_p.Q1700*|ALMS1_uc002sjg.2_Nonsense_Mutation_p.Q1130*|ALMS1_uc002sjh.1_Nonsense_Mutation_p.Q1130*	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1742	34 X 47 AA approximate tandem repeat.|26.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AGCTGTTCCTCAACCAGCTGA	0.428													12	133	---	---	---	---	PASS
ALMS1	7840	broad.mit.edu	37	2	73717021	73717021	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:73717021C>A	uc002sje.1	+	12	8049	c.7938C>A	c.(7936-7938)TCC>TCA	p.S2646S	ALMS1_uc002sjf.1_Silent_p.S2602S|ALMS1_uc002sjg.2_Silent_p.S2032S|ALMS1_uc002sjh.1_Silent_p.S2032S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2644					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TTTGGAATTCCTTGCAGTTAA	0.423													6	79	---	---	---	---	PASS
DNAH6	1768	broad.mit.edu	37	2	84775477	84775477	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:84775477G>T	uc010fgb.2	+	8	1389	c.1252G>T	c.(1252-1254)GAC>TAC	p.D418Y	DNAH6_uc002soo.2_5'UTR|DNAH6_uc002sop.2_5'UTR	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	418	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						CACTTATGGAGACTCTGAGAA	0.368													24	51	---	---	---	---	PASS
USP39	10713	broad.mit.edu	37	2	85850862	85850862	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:85850862C>A	uc002sqe.2	+	4	563	c.527C>A	c.(526-528)CCA>CAA	p.P176Q	USP39_uc002sqb.2_5'UTR|USP39_uc010ysu.1_Missense_Mutation_p.P98Q|USP39_uc010ysv.1_Missense_Mutation_p.P73Q|USP39_uc010fgn.1_Missense_Mutation_p.P176Q|USP39_uc002sqf.2_Missense_Mutation_p.P176Q|USP39_uc002sqg.2_Missense_Mutation_p.P176Q|USP39_uc010fgo.2_Missense_Mutation_p.P176Q	NM_006590	NP_006581	Q53GS9	SNUT2_HUMAN	ubiquitin specific protease 39	176	UBP-type.				spliceosome assembly|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)	1						TACTGCCTTCCAGACAACTAT	0.493													8	151	---	---	---	---	PASS
EIF2AK3	9451	broad.mit.edu	37	2	88885387	88885387	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:88885387C>T	uc002stc.3	-	9	1824	c.1622G>A	c.(1621-1623)CGC>CAC	p.R541H		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	541	Cytoplasmic (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GAAAAGCCTGCGCACAATAAA	0.308													16	41	---	---	---	---	PASS
TMEM131	23505	broad.mit.edu	37	2	98412760	98412760	+	Missense_Mutation	SNP	A	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:98412760A>C	uc002syh.3	-	28	3350	c.3121T>G	c.(3121-3123)TGT>GGT	p.C1041G		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1041						integral to membrane				ovary(4)|central_nervous_system(2)	6						TATCCTTCACATGAGTATCCA	0.303													4	7	---	---	---	---	PASS
IMP4	92856	broad.mit.edu	37	2	131103469	131103469	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:131103469T>C	uc002tra.1	+	6	574	c.557T>C	c.(556-558)CTC>CCC	p.L186P		NM_033416	NP_219484	Q96G21	IMP4_HUMAN	IMP4, U3 small nucleolar ribonucleoprotein,	186	Brix.				rRNA processing|translation	nucleolus|ribonucleoprotein complex	aminoacyl-tRNA ligase activity|ATP binding|protein binding			central_nervous_system(2)	2	Colorectal(110;0.1)					AAGCCCCACCTCATCACACAC	0.637													5	25	---	---	---	---	PASS
IMP4	92856	broad.mit.edu	37	2	131103470	131103470	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:131103470C>T	uc002tra.1	+	6	575	c.558C>T	c.(556-558)CTC>CTT	p.L186L		NM_033416	NP_219484	Q96G21	IMP4_HUMAN	IMP4, U3 small nucleolar ribonucleoprotein,	186	Brix.				rRNA processing|translation	nucleolus|ribonucleoprotein complex	aminoacyl-tRNA ligase activity|ATP binding|protein binding			central_nervous_system(2)	2	Colorectal(110;0.1)					AGCCCCACCTCATCACACACG	0.637													5	26	---	---	---	---	PASS
LRP1B	53353	broad.mit.edu	37	2	141081591	141081591	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:141081591A>T	uc002tvj.1	-	81	13357	c.12385T>A	c.(12385-12387)TAT>AAT	p.Y4129N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4129	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTGCTCCATATATATAATCT	0.294										TSP Lung(27;0.18)			34	36	---	---	---	---	PASS
TANK	10010	broad.mit.edu	37	2	162087607	162087607	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:162087607G>T	uc002ubr.1	+	7	804	c.646G>T	c.(646-648)GGA>TGA	p.G216*	TANK_uc002ubs.2_Nonsense_Mutation_p.G216*	NM_004180	NP_004171	Q92844	TANK_HUMAN	TRAF interacting protein TANK isoform a	216						cytosol	metal ion binding|protein binding			ovary(1)	1						CACACCAAGAGGACTGTGCAG	0.403													6	91	---	---	---	---	PASS
GORASP2	26003	broad.mit.edu	37	2	171822450	171822450	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:171822450C>G	uc002ugk.2	+	10	1309	c.1169C>G	c.(1168-1170)ACC>AGC	p.T390S	GORASP2_uc002ugj.2_Missense_Mutation_p.T322S|GORASP2_uc010zdl.1_Missense_Mutation_p.T402S|GORASP2_uc010zdm.1_Missense_Mutation_p.T346S|GORASP2_uc002ugl.2_Missense_Mutation_p.T322S|GORASP2_uc002ugm.2_Missense_Mutation_p.T172S	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	390						Golgi membrane				breast(1)|central_nervous_system(1)	2						CTCCCGCCCACCAGCAACGCA	0.637													8	38	---	---	---	---	PASS
SP3	6670	broad.mit.edu	37	2	174777852	174777852	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:174777852C>A	uc002uig.2	-	6	2139	c.1975G>T	c.(1975-1977)GGT>TGT	p.G659C	SP3_uc002uie.2_Missense_Mutation_p.G591C|SP3_uc002uif.2_Missense_Mutation_p.G606C|SP3_uc010zel.1_Missense_Mutation_p.G656C	NM_003111	NP_003102	Q02447	SP3_HUMAN	Sp3 transcription factor isoform 1	659	C2H2-type 2.				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	protein binding|zinc ion binding		EWSR1/SP3(3)	soft_tissue(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.185)			AATCTTTTACCACAGTACATC	0.398													5	67	---	---	---	---	PASS
NFE2L2	4780	broad.mit.edu	37	2	178098957	178098957	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:178098957G>A	uc002ulh.3	-	2	643	c.88C>T	c.(88-90)CTT>TTT	p.L30F	NFE2L2_uc002ulg.3_Missense_Mutation_p.L14F|NFE2L2_uc010zfa.1_Missense_Mutation_p.L14F|NFE2L2_uc002uli.3_Missense_Mutation_p.L14F|NFE2L2_uc010fra.2_Missense_Mutation_p.L14F|NFE2L2_uc010frb.2_Missense_Mutation_p.L14F	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	30					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			CTTACTCCAAGATCTATATCT	0.368			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			11	102	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179407938	179407938	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:179407938G>T	uc010zfg.1	-	296	89282	c.89058C>A	c.(89056-89058)ACC>ACA	p.T29686T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T23381T|TTN_uc010zfi.1_Silent_p.T23314T|TTN_uc010zfj.1_Silent_p.T23189T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30613							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGGTTTTAAGGTGACAACCT	0.448													14	504	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179416982	179416982	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:179416982G>T	uc010zfg.1	-	284	83165	c.82941C>A	c.(82939-82941)GTC>GTA	p.V27647V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V21342V|TTN_uc010zfi.1_Silent_p.V21275V|TTN_uc010zfj.1_Silent_p.V21150V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28574							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTAATGGGGACTGCAATTC	0.408													22	233	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179438954	179438954	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:179438954C>A	uc010zfg.1	-	275	64425	c.64201G>T	c.(64201-64203)GGA>TGA	p.G21401*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.G15096*|TTN_uc010zfi.1_Nonsense_Mutation_p.G15029*|TTN_uc010zfj.1_Nonsense_Mutation_p.G14904*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22328							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCCACCGTCCATTAGGAAGG	0.413													18	102	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179604870	179604870	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:179604870C>T	uc010zfh.1	-	46	12801	c.12577G>A	c.(12577-12579)GTG>ATG	p.V4193M	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.V4126M|TTN_uc010zfj.1_Missense_Mutation_p.V4001M|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTATTGCCACGGGCTCTCTT	0.448													33	163	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179611618	179611618	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:179611618G>T	uc002unb.2	-	46	15733	c.15509C>A	c.(15508-15510)CCC>CAC	p.P5170H	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTTCATTGGGTGTACCAAA	0.408													8	184	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179614291	179614291	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:179614291C>A	uc002unb.2	-	46	13060	c.12836G>T	c.(12835-12837)GGA>GTA	p.G4279V	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACAGATTCTCCCTGGTCTTG	0.373													21	93	---	---	---	---	PASS
CCDC141	285025	broad.mit.edu	37	2	179736207	179736207	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:179736207G>T	uc002unf.1	-	4	484	c.427C>A	c.(427-429)CAG>AAG	p.Q143K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	143							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			AAAATGAACTGGAGGCTCCCT	0.388													10	289	---	---	---	---	PASS
COL5A2	1290	broad.mit.edu	37	2	189927594	189927594	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:189927594C>A	uc002uqk.2	-	29	2249	c.1974G>T	c.(1972-1974)CCG>CCT	p.P658P	COL5A2_uc010frx.2_Silent_p.P234P	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	658					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CACATACCGGCGGGCCCACAG	0.398													4	66	---	---	---	---	PASS
HIBCH	26275	broad.mit.edu	37	2	191117026	191117026	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:191117026G>T	uc002uru.2	-	8	608	c.525C>A	c.(523-525)TTC>TTA	p.F175L	HIBCH_uc002urv.2_Missense_Mutation_p.F175L	NM_014362	NP_055177	Q6NVY1	HIBCH_HUMAN	3-hydroxyisobutyryl-Coenzyme A hydrolase isoform	175					branched chain family amino acid catabolic process	mitochondrial matrix	3-hydroxyisobutyryl-CoA hydrolase activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000586)|Epithelial(96;0.0286)|all cancers(119;0.0814)			CCACATCAGGGAACAGTCCTG	0.363													13	22	---	---	---	---	PASS
DNAH7	56171	broad.mit.edu	37	2	196636525	196636525	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:196636525G>A	uc002utj.3	-	61	11393	c.11292C>T	c.(11290-11292)TTC>TTT	p.F3764F	DNAH7_uc002uti.3_Silent_p.F247F	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3764					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCTCGATGTCGAAGTTGTTTG	0.448													16	150	---	---	---	---	PASS
CCDC150	284992	broad.mit.edu	37	2	197541356	197541356	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:197541356G>A	uc002utp.1	+	12	1476	c.1341G>A	c.(1339-1341)GAG>GAA	p.E447E	CCDC150_uc010zgq.1_RNA|CCDC150_uc010zgr.1_RNA|CCDC150_uc010zgs.1_Silent_p.E115E	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	447	Potential.										0						TGCAAAAAGAGCTGCTAGAAT	0.428													23	68	---	---	---	---	PASS
PLCL1	5334	broad.mit.edu	37	2	198948853	198948853	+	Silent	SNP	T	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:198948853T>G	uc010fsp.2	+	2	903	c.612T>G	c.(610-612)GTT>GTG	p.V204V	PLCL1_uc002uuv.3_Silent_p.V125V	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	204	PH.|Interaction with PPP1C.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TGGACCTAGTTGCCAATTCAG	0.478													12	79	---	---	---	---	PASS
SPATS2L	26010	broad.mit.edu	37	2	201337626	201337626	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:201337626G>T	uc002uvn.3	+	12	1484	c.1132G>T	c.(1132-1134)GCA>TCA	p.A378S	SPATS2L_uc010fst.2_Missense_Mutation_p.A378S|SPATS2L_uc002uvo.3_Missense_Mutation_p.A318S|SPATS2L_uc002uvp.3_Missense_Mutation_p.A378S|SPATS2L_uc002uvq.3_Missense_Mutation_p.A309S|SPATS2L_uc002uvr.3_Missense_Mutation_p.A378S|SPATS2L_uc010zhc.1_Missense_Mutation_p.A408S	NM_015535	NP_056350	Q9NUQ6	SPS2L_HUMAN	SPATS2-like protein isoform a	378						cytoplasm|nucleolus				ovary(2)|pancreas(1)	3						GAATGCGCACGCAGCAACCTC	0.478													6	62	---	---	---	---	PASS
AOX1	316	broad.mit.edu	37	2	201507519	201507519	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:201507519G>C	uc002uvx.2	+	25	2943	c.2842G>C	c.(2842-2844)GAG>CAG	p.E948Q	AOX1_uc010zhf.1_Missense_Mutation_p.E504Q|AOX1_uc010fsu.2_Missense_Mutation_p.E314Q	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	948					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	ACTATCCCCTGAGAAGGTAAT	0.323													7	43	---	---	---	---	PASS
MAP2	4133	broad.mit.edu	37	2	210557999	210557999	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:210557999G>A	uc002vde.1	+	7	1353	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	MAP2_uc002vdc.1_Missense_Mutation_p.E369K|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.E365K	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	369					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TTTTAAAATTGAAGAGCCCCA	0.458													9	48	---	---	---	---	PASS
ERBB4	2066	broad.mit.edu	37	2	212251789	212251789	+	Missense_Mutation	SNP	T	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:212251789T>G	uc002veg.1	-	27	3368	c.3270A>C	c.(3268-3270)GAA>GAC	p.E1090D	ERBB4_uc002veh.1_Missense_Mutation_p.E1074D|ERBB4_uc010zji.1_Missense_Mutation_p.E1080D|ERBB4_uc010zjj.1_Missense_Mutation_p.E1064D	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	1090	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CCACAGGAGCTTCTGGAATTG	0.502										TSP Lung(8;0.080)			9	112	---	---	---	---	PASS
FN1	2335	broad.mit.edu	37	2	216274800	216274800	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr2:216274800G>T	uc002vfa.2	-	14	2245	c.1979C>A	c.(1978-1980)CCA>CAA	p.P660Q	FN1_uc002vfb.2_Missense_Mutation_p.P660Q|FN1_uc002vfc.2_Missense_Mutation_p.P660Q|FN1_uc002vfd.2_Missense_Mutation_p.P660Q|FN1_uc002vfe.2_Missense_Mutation_p.P660Q|FN1_uc002vff.2_Missense_Mutation_p.P660Q|FN1_uc002vfg.2_Missense_Mutation_p.P660Q|FN1_uc002vfh.2_Missense_Mutation_p.P660Q|FN1_uc002vfi.2_Missense_Mutation_p.P660Q|FN1_uc002vfj.2_Missense_Mutation_p.P660Q	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	660	Fibronectin type-III 1.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TAAGTGGCCTGGTATGGTAGC	0.403													5	17	---	---	---	---	PASS
THUMPD3	25917	broad.mit.edu	37	3	9406810	9406810	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:9406810C>A	uc003bro.3	+	2	206	c.58C>A	c.(58-60)CAG>AAG	p.Q20K	LOC440944_uc003brm.2_Intron|THUMPD3_uc003brn.3_Missense_Mutation_p.Q20K	NM_001114092	NP_001107564	Q9BV44	THUM3_HUMAN	THUMP domain containing 3	20							methyltransferase activity|protein binding|RNA binding			ovary(1)	1	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.101)		TCATGAGAACCAGAAGTCTGT	0.453													5	78	---	---	---	---	PASS
ZFYVE20	64145	broad.mit.edu	37	3	15116107	15116107	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:15116107C>T	uc003bzm.1	-	14	2151	c.1537G>A	c.(1537-1539)GAG>AAG	p.E513K	ZFYVE20_uc010hek.1_Missense_Mutation_p.E513K	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	513	UIM.|Potential.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						TCCTCCTCCTCAGCCTGCCTC	0.612													30	34	---	---	---	---	PASS
CADPS	8618	broad.mit.edu	37	3	62452069	62452069	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:62452069A>G	uc003dll.2	-	25	3857	c.3497T>C	c.(3496-3498)ATA>ACA	p.I1166T	CADPS_uc003dlj.1_Missense_Mutation_p.I121T|CADPS_uc003dlk.1_Missense_Mutation_p.I614T|CADPS_uc003dlm.2_Missense_Mutation_p.I1127T|CADPS_uc003dln.2_Missense_Mutation_p.I1087T	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1166					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TAGTTCGTCTATTTTTGAATG	0.358													12	19	---	---	---	---	PASS
SUCLG2	8801	broad.mit.edu	37	3	67426195	67426195	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:67426195C>A	uc003dna.3	-	11	1300	c.1272G>T	c.(1270-1272)AAG>AAT	p.K424N	SUCLG2_uc010hob.2_Missense_Mutation_p.K171N	NM_003848	NP_003839	Q96I99	SUCB2_HUMAN	succinate-CoA ligase, GDP-forming beta subunit	424					succinyl-CoA metabolic process|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|GTP binding|succinate-CoA ligase (GDP-forming) activity			central_nervous_system(1)|skin(1)	2		Renal(2;0.00294)|Lung NSC(201;0.012)|Hepatocellular(537;0.121)		BRCA - Breast invasive adenocarcinoma(55;3.53e-05)|Epithelial(33;0.000153)	Succinic acid(DB00139)	TGGCCACAGCCTTCTTGGCTG	0.488													12	15	---	---	---	---	PASS
GXYLT2	727936	broad.mit.edu	37	3	72971411	72971411	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:72971411C>T	uc003dpg.2	+	3	525	c.525C>T	c.(523-525)ATC>ATT	p.I175I		NM_001080393	NP_001073862	A0PJZ3	GXLT2_HUMAN	glycosyltransferase 8 domain containing 4	175	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						TCTACCCCATCACATTTTCTG	0.453													58	118	---	---	---	---	PASS
EPHA3	2042	broad.mit.edu	37	3	89521662	89521662	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:89521662C>T	uc003dqy.2	+	16	2964	c.2739C>T	c.(2737-2739)TTC>TTT	p.F913F	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	913	Cytoplasmic (Potential).|SAM.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TCACTACCTTCCGCACAACAG	0.468										TSP Lung(6;0.00050)			23	77	---	---	---	---	PASS
BBX	56987	broad.mit.edu	37	3	107429440	107429440	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:107429440G>T	uc010hpr.2	+	4	460	c.133G>T	c.(133-135)GAG>TAG	p.E45*	BBX_uc003dwk.3_Nonsense_Mutation_p.E45*|BBX_uc003dwl.3_Nonsense_Mutation_p.E45*|BBX_uc010hps.1_Nonsense_Mutation_p.E66*|BBX_uc003dwm.3_Nonsense_Mutation_p.E45*	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	45	Poly-Glu.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			agaggaagaagaggaagacga	0.294													5	47	---	---	---	---	PASS
CASR	846	broad.mit.edu	37	3	121973103	121973103	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:121973103G>A	uc003eev.3	+	2	439	c.67G>A	c.(67-69)GAC>AAC	p.D23N	CASR_uc003eew.3_Missense_Mutation_p.D23N	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	23	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTACGGGCCAGACCAGCGAGC	0.537													34	117	---	---	---	---	PASS
TOPBP1	11073	broad.mit.edu	37	3	133362168	133362168	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:133362168G>A	uc003eps.2	-	12	2029	c.1897C>T	c.(1897-1899)CTC>TTC	p.L633F		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	633	BRCT 4.				DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						GGTGTGAAGAGAGGATTCGAC	0.373								Other_conserved_DNA_damage_response_genes					5	66	---	---	---	---	PASS
TMEM44	93109	broad.mit.edu	37	3	194309345	194309345	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr3:194309345G>T	uc010hzn.2	-	11	1510	c.1341C>A	c.(1339-1341)CTC>CTA	p.L447L	TMEM44_uc010hzm.2_3'UTR|TMEM44_uc003fuc.2_Silent_p.L132L|TMEM44_uc003fue.2_Silent_p.L400L|TMEM44_uc003fud.2_Silent_p.L411L|TMEM44_uc003fuf.2_3'UTR|TMEM44_uc011bsv.1_Silent_p.L410L|uc003fug.2_5'Flank	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	447	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		TGCTGCCTTCGAGGTTCACAT	0.507													6	124	---	---	---	---	PASS
HTT	3064	broad.mit.edu	37	4	3105586	3105586	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:3105586C>A	uc011bvq.1	+	5	655	c.510C>A	c.(508-510)CTC>CTA	p.L170L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	168					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GGTTACAGCTCGAGCTCTATA	0.294													4	92	---	---	---	---	PASS
PSAPL1	768239	broad.mit.edu	37	4	7435209	7435209	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:7435209C>A	uc011bwj.1	-	1	1492	c.1398G>T	c.(1396-1398)GTG>GTT	p.V466V	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	466	Saposin B-type 4.				sphingolipid metabolic process	extracellular region|lysosome					0						GGCAGGCCCCCACCTTCTTGC	0.632													3	3	---	---	---	---	PASS
BOD1L	259282	broad.mit.edu	37	4	13604824	13604824	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:13604824C>G	uc003gmz.1	-	10	3817	c.3700G>C	c.(3700-3702)GAT>CAT	p.D1234H	BOD1L_uc010idr.1_Missense_Mutation_p.D571H	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1234							DNA binding			ovary(5)|breast(1)	6						GTTTCAGAATCTATATTCACT	0.393													25	68	---	---	---	---	PASS
LDB2	9079	broad.mit.edu	37	4	16900050	16900050	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:16900050C>G	uc003goz.2	-	1	375	c.59G>C	c.(58-60)AGG>ACG	p.R20T	LDB2_uc003gpa.2_Missense_Mutation_p.R20T|LDB2_uc003gpb.2_Missense_Mutation_p.R20T|LDB2_uc011bxh.1_Missense_Mutation_p.R20T|LDB2_uc010iee.2_Missense_Mutation_p.R20T	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	20							LIM domain binding|transcription cofactor activity				0						TGGTGTATGCCTCCTATAAAA	0.453													8	48	---	---	---	---	PASS
CORIN	10699	broad.mit.edu	37	4	47667122	47667122	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:47667122G>T	uc003gxm.2	-	11	1609	c.1516C>A	c.(1516-1518)CTC>ATC	p.L506I	CORIN_uc011bzf.1_Missense_Mutation_p.L367I|CORIN_uc011bzg.1_Missense_Mutation_p.L439I|CORIN_uc011bzh.1_Missense_Mutation_p.L469I|CORIN_uc011bzi.1_Missense_Mutation_p.L469I	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	506	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						AAGAACATGAGGTATTTATAA	0.423													6	100	---	---	---	---	PASS
AFP	174	broad.mit.edu	37	4	74301996	74301996	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:74301996C>T	uc003hgz.1	+	1	64	c.17C>T	c.(16-18)TCA>TTA	p.S6L	AFP_uc003hha.1_Missense_Mutation_p.S6L|AFP_uc003hgy.1_Intron	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	6					transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGGGTGGAATCAATTTTTTTA	0.318									Alpha-Fetoprotein_Hereditary_Persistence_of				7	40	---	---	---	---	PASS
AFP	174	broad.mit.edu	37	4	74302032	74302032	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:74302032C>G	uc003hgz.1	+	1	100	c.53C>G	c.(52-54)TCC>TGC	p.S18C	AFP_uc003hha.1_Missense_Mutation_p.S18C|AFP_uc003hgy.1_Intron	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	18					transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTTACTGAATCCAGAACACTG	0.284									Alpha-Fetoprotein_Hereditary_Persistence_of				6	33	---	---	---	---	PASS
AREG	374	broad.mit.edu	37	4	75312365	75312365	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:75312365C>T	uc011cbl.1	+	2	386	c.176C>T	c.(175-177)TCA>TTA	p.S59L		NM_001657	NP_001648	P15514	AREG_HUMAN	amphiregulin preproprotein	59					cell proliferation|cell-cell signaling|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|positive regulation of DNA replication	cell surface|extracellular space|integral to membrane	cytokine activity|growth factor activity				0			Lung(101;0.196)			GAGATGTCTTCAGGGAGTGAG	0.483													47	33	---	---	---	---	PASS
COPS4	51138	broad.mit.edu	37	4	83996472	83996472	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:83996472G>T	uc003hoa.2	+	10	1249	c.1110G>T	c.(1108-1110)TGG>TGT	p.W370C	COPS4_uc003hob.2_Nonsense_Mutation_p.G420*|COPS4_uc010ijw.2_Missense_Mutation_p.W402C|COPS4_uc010ijx.2_Missense_Mutation_p.G342V	NM_016129	NP_057213	Q9BT78	CSN4_HUMAN	COP9 signalosome subunit 4	370					cullin deneddylation	cytoplasm|signalosome	protein binding			kidney(1)	1		Hepatocellular(203;0.114)				TGCCAACGTGGGATAAGCAGA	0.383													5	41	---	---	---	---	PASS
PTPN13	5783	broad.mit.edu	37	4	87690984	87690984	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:87690984G>A	uc003hpz.2	+	29	5032	c.4552G>A	c.(4552-4554)GAA>AAA	p.E1518K	PTPN13_uc003hpy.2_Missense_Mutation_p.E1523K|PTPN13_uc003hqa.2_Missense_Mutation_p.E1499K|PTPN13_uc003hqb.2_Missense_Mutation_p.E1327K|PTPN13_uc003hqc.1_5'UTR	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1518	PDZ 3.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TTTTTCTCGAGAAGATAATCT	0.318													6	57	---	---	---	---	PASS
AFF1	4299	broad.mit.edu	37	4	87967424	87967424	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:87967424G>T	uc003hqj.3	+	2	531	c.124G>T	c.(124-126)GGA>TGA	p.G42*	AFF1_uc011ccx.1_Intron|AFF1_uc003hqh.1_Nonsense_Mutation_p.G49*|AFF1_uc011ccy.1_Nonsense_Mutation_p.G49*|AFF1_uc011ccz.1_Nonsense_Mutation_p.G49*|AFF1_uc003hqk.3_Nonsense_Mutation_p.G42*|AFF1_uc011cda.1_Intron	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	42						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		TCCCCTTTTTGGAGAGCCCTA	0.408													7	130	---	---	---	---	PASS
HERC6	55008	broad.mit.edu	37	4	89317227	89317227	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:89317227C>A	uc011cdi.1	+	6	1003	c.820C>A	c.(820-822)CCT>ACT	p.P274T	HERC6_uc003hrp.1_RNA|HERC6_uc011cdj.1_Missense_Mutation_p.P274T|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	274	RCC1 5.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		CAGCCCCACTCCTGAGAAGAG	0.428													21	53	---	---	---	---	PASS
TBCK	93627	broad.mit.edu	37	4	107229955	107229955	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:107229955G>T	uc010ilv.2	-	2	528	c.163C>A	c.(163-165)CAG>AAG	p.Q55K	TBCK_uc003hye.2_Missense_Mutation_p.Q55K|TBCK_uc003hyc.2_Missense_Mutation_p.Q55K|TBCK_uc003hyd.2_5'UTR|TBCK_uc003hyf.2_Missense_Mutation_p.Q55K	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	55	Protein kinase.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						TCCACATACTGGCAGAGTCTG	0.363													5	65	---	---	---	---	PASS
C4orf31	79625	broad.mit.edu	37	4	121966917	121966917	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:121966917C>T	uc003idq.1	-	2	603	c.76G>A	c.(76-78)GAT>AAT	p.D26N		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	26											0						AGTTCCTCATCCCGGGTGGGT	0.478													13	18	---	---	---	---	PASS
BBS7	55212	broad.mit.edu	37	4	122782823	122782823	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:122782823C>A	uc003ied.2	-	4	351	c.177G>T	c.(175-177)AAG>AAT	p.K59N	BBS7_uc003iee.1_Missense_Mutation_p.K59N|BBS7_uc010inq.1_Missense_Mutation_p.K15N	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	59					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						CGGGTAAAGTCTTGAACACTG	0.373									Bardet-Biedl_syndrome				7	14	---	---	---	---	PASS
KIAA1109	84162	broad.mit.edu	37	4	123246404	123246404	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:123246404G>A	uc003ieh.2	+	63	10969	c.10924G>A	c.(10924-10926)GAA>AAA	p.E3642K	KIAA1109_uc003iel.1_Missense_Mutation_p.E1577K|KIAA1109_uc003iem.2_Missense_Mutation_p.E12K	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3642					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGGAGAAACTGAAGAGCTCCC	0.338													6	38	---	---	---	---	PASS
TKTL2	84076	broad.mit.edu	37	4	164393214	164393214	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:164393214C>G	uc003iqp.3	-	1	1834	c.1673G>C	c.(1672-1674)GGC>GCC	p.G558A		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	558						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GATAACTCGGCCGCCTGTGGC	0.507													15	27	---	---	---	---	PASS
TKTL2	84076	broad.mit.edu	37	4	164393215	164393215	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:164393215C>A	uc003iqp.3	-	1	1833	c.1672G>T	c.(1672-1674)GGC>TGC	p.G558C		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	558						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATAACTCGGCCGCCTGTGGCT	0.507													15	31	---	---	---	---	PASS
FBXO8	26269	broad.mit.edu	37	4	175160165	175160165	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:175160165C>A	uc003itp.2	-	5	1602	c.752G>T	c.(751-753)CGA>CTA	p.R251L	FBXO8_uc003itq.2_Missense_Mutation_p.R210L	NM_012180	NP_036312	Q9NRD0	FBX8_HUMAN	F-box only protein 8	251	SEC7.				regulation of ARF protein signal transduction|ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ARF guanyl-nucleotide exchange factor activity			breast(2)	2		Prostate(90;0.00201)|Melanoma(52;0.012)|Renal(120;0.0183)|all_neural(102;0.0887)|all_hematologic(60;0.107)		all cancers(43;7.29e-18)|Epithelial(43;1.85e-15)|OV - Ovarian serous cystadenocarcinoma(60;5.62e-09)|GBM - Glioblastoma multiforme(59;0.00115)|STAD - Stomach adenocarcinoma(60;0.00299)|LUSC - Lung squamous cell carcinoma(193;0.1)		GCCAAGTTCTCGCATTAAATC	0.388													4	20	---	---	---	---	PASS
ADAM29	11086	broad.mit.edu	37	4	175899083	175899083	+	Nonsense_Mutation	SNP	C	T	T	rs141115697		TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:175899083C>T	uc003iuc.2	+	5	3077	c.2407C>T	c.(2407-2409)CAG>TAG	p.Q803*	ADAM29_uc003iud.2_Nonsense_Mutation_p.Q803*|ADAM29_uc010irr.2_Nonsense_Mutation_p.Q803*|ADAM29_uc011cki.1_Nonsense_Mutation_p.Q803*	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	803	8.|Cytoplasmic (Potential).|9 X 9 AA approximate repeats.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GACACCCTCCCAGAGGCAACC	0.567													16	49	---	---	---	---	PASS
ADAM29	11086	broad.mit.edu	37	4	175899130	175899130	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:175899130G>A	uc003iuc.2	+	5	3124	c.2454G>A	c.(2452-2454)ACG>ACA	p.T818T	ADAM29_uc003iud.2_Silent_p.T818T|ADAM29_uc010irr.2_Silent_p.T818T|ADAM29_uc011cki.1_Silent_p.T818T	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	818	Cytoplasmic (Potential).|9 X 9 AA approximate repeats.|9.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CTCCTGTGACGCCCTCCTAGA	0.587													11	44	---	---	---	---	PASS
SORBS2	8470	broad.mit.edu	37	4	186545420	186545420	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr4:186545420C>A	uc003iyl.2	-	13	2009	c.1151G>T	c.(1150-1152)TGT>TTT	p.C384F	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.C484F|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.C288F|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.C498F|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	384						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		GAGATCGTCACAGCTCCGGGA	0.537													5	12	---	---	---	---	PASS
SLC45A2	51151	broad.mit.edu	37	5	33947345	33947345	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:33947345A>G	uc003jid.2	-	6	1383	c.1291T>C	c.(1291-1293)TTT>CTT	p.F431L	SLC45A2_uc003jie.2_Missense_Mutation_p.F431L	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	431	Helical; Name=10; (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						ATTACACCAAACAGGCTGCAC	0.512													47	247	---	---	---	---	PASS
SLC1A3	6507	broad.mit.edu	37	5	36677103	36677103	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:36677103G>A	uc003jkj.3	+	6	1153	c.677G>A	c.(676-678)CGA>CAA	p.R226Q	SLC1A3_uc011cox.1_Missense_Mutation_p.R119Q|SLC1A3_uc010iuy.2_Missense_Mutation_p.R226Q	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	226	Extracellular (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	ACTCTTACCCGAATCACAGAG	0.488													10	87	---	---	---	---	PASS
NIPBL	25836	broad.mit.edu	37	5	37017247	37017247	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:37017247G>A	uc003jkl.3	+	24	5402	c.4903G>A	c.(4903-4905)GAA>AAA	p.E1635K	NIPBL_uc003jkk.3_Missense_Mutation_p.E1635K	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1635					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGGATCTATAGAACGCATTTT	0.333													10	49	---	---	---	---	PASS
OSMR	9180	broad.mit.edu	37	5	38881856	38881856	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:38881856G>T	uc003jln.1	+	4	775	c.408G>T	c.(406-408)GAG>GAT	p.E136D	OSMR_uc003jlm.1_Missense_Mutation_p.E136D	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	136	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GTTCCTGGGAGGAAGTCAGTG	0.418													7	121	---	---	---	---	PASS
CARD6	84674	broad.mit.edu	37	5	40843654	40843654	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:40843654G>T	uc003jmg.2	+	2	759	c.684G>T	c.(682-684)GTG>GTT	p.V228V		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	228	Asp/Glu-rich.				apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						AAGCCACTGTGGAAGAGGAGG	0.433													5	66	---	---	---	---	PASS
FBXO4	26272	broad.mit.edu	37	5	41927172	41927172	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:41927172G>T	uc003jmq.2	+	2	303	c.247G>T	c.(247-249)GGA>TGA	p.G83*	FBXO4_uc003jmp.2_Nonsense_Mutation_p.G83*|FBXO4_uc003jmr.2_Nonsense_Mutation_p.G83*	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	83	F-box.				positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				GTGTCAGTTGGGAAGTACAAA	0.373													7	134	---	---	---	---	PASS
NNT	23530	broad.mit.edu	37	5	43659273	43659273	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:43659273G>T	uc003joe.2	+	17	2710	c.2455G>T	c.(2455-2457)GGT>TGT	p.G819C	NNT_uc003jof.2_Missense_Mutation_p.G819C	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	819	Helical; (Potential).				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	GTTGTTCTAGGGTGTGACTTT	0.413													7	160	---	---	---	---	PASS
HCN1	348980	broad.mit.edu	37	5	45461983	45461983	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:45461983G>T	uc003jok.2	-	3	1001	c.976C>A	c.(976-978)CCA>ACA	p.P326T		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	326	Extracellular (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CAATCTGGTGGGAAGTCCTGC	0.408													42	27	---	---	---	---	PASS
VCAN	1462	broad.mit.edu	37	5	82850838	82850838	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:82850838G>C	uc003kii.3	+	12	10072	c.9716G>C	c.(9715-9717)TGG>TCG	p.W3239S	VCAN_uc003kij.3_Missense_Mutation_p.W2252S|VCAN_uc010jau.2_Missense_Mutation_p.W1485S|VCAN_uc003kik.3_Missense_Mutation_p.W498S|VCAN_uc003kil.3_Missense_Mutation_p.W1903S	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3239	C-type lectin.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GACTTCCGTTGGACTGATGGC	0.413													6	18	---	---	---	---	PASS
MEGF10	84466	broad.mit.edu	37	5	126734484	126734484	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:126734484G>T	uc003kuh.3	+	8	1138	c.776G>T	c.(775-777)TGG>TTG	p.W259L	MEGF10_uc010jdc.1_Missense_Mutation_p.W259L|MEGF10_uc010jdd.1_Missense_Mutation_p.W259L|MEGF10_uc003kui.3_Missense_Mutation_p.W259L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	259	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 4.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CCTTCTGGCTGGATGGTAAGC	0.507													19	19	---	---	---	---	PASS
MEGF10	84466	broad.mit.edu	37	5	126769147	126769147	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:126769147G>T	uc003kuh.3	+	15	2148	c.1786G>T	c.(1786-1788)GAT>TAT	p.D596Y	MEGF10_uc003kui.3_Missense_Mutation_p.D596Y	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	596	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 11.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		ATGCTCCCCTGATGATGGCAT	0.562													14	24	---	---	---	---	PASS
PCDHA3	56145	broad.mit.edu	37	5	140181452	140181452	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:140181452G>A	uc003lhf.2	+	1	670	c.670G>A	c.(670-672)GGC>AGC	p.G224S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.G224S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	224	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAGCTCACTGGCACGACTCA	0.403													15	31	---	---	---	---	PASS
PCDHA12	56137	broad.mit.edu	37	5	140255775	140255775	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:140255775C>T	uc003lic.2	+	1	845	c.718C>T	c.(718-720)CCG>TCG	p.P240S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.P240S	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	240	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACAATGGTCCGGCGTTTGA	0.428													18	51	---	---	---	---	PASS
SH3RF2	153769	broad.mit.edu	37	5	145428766	145428766	+	Missense_Mutation	SNP	G	T	T	rs146377978		TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:145428766G>T	uc003lnt.2	+	7	1518	c.1280G>T	c.(1279-1281)CGA>CTA	p.R427L	SH3RF2_uc011dbl.1_Missense_Mutation_p.R427L|SH3RF2_uc011dbm.1_5'Flank|SH3RF2_uc003lnu.2_5'Flank	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	427	SH3 3.						ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCACCGGGCGAGTCGGCATC	0.612											OREG0016895	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	23	---	---	---	---	PASS
JAKMIP2	9832	broad.mit.edu	37	5	147023671	147023671	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:147023671G>C	uc003loq.1	-	7	1556	c.1174C>G	c.(1174-1176)CTA>GTA	p.L392V	JAKMIP2_uc011dbx.1_Missense_Mutation_p.L350V|JAKMIP2_uc003lor.1_Missense_Mutation_p.L392V|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.L392V	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	392	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAAGTTTTAGAAACTCTGTT	0.393													13	24	---	---	---	---	PASS
TRIM38	10475	broad.mit.edu	37	6	25983517	25983517	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:25983517C>T	uc003nfm.2	+	8	1435	c.1000C>T	c.(1000-1002)CCC>TCC	p.P334S	TRIM38_uc003nfn.2_Missense_Mutation_p.P316S|TRIM38_uc010jqd.2_5'UTR	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	334	B30.2/SPRY.				positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						TACTGCCTTCCCCTGTGTCTT	0.478													5	81	---	---	---	---	PASS
HIST1H1C	3006	broad.mit.edu	37	6	26056651	26056651	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:26056651G>A	uc003nfw.2	-	1	49	c.6C>T	c.(4-6)TCC>TCT	p.S2S		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	2					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						GAGCAGTCTCGGACATGTTGA	0.612													9	10	---	---	---	---	PASS
BTN2A2	10385	broad.mit.edu	37	6	26390287	26390287	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:26390287C>T	uc003nhq.2	+	5	865	c.779C>T	c.(778-780)ACC>ATC	p.T260I	BTN2A2_uc011dkf.1_Missense_Mutation_p.T144I|BTN2A2_uc011dkg.1_Missense_Mutation_p.T166I|BTN2A2_uc003nhr.2_Missense_Mutation_p.T144I|BTN2A2_uc011dkh.1_Missense_Mutation_p.T50I|BTN2A2_uc003nhs.2_Missense_Mutation_p.T260I|BTN2A2_uc003nht.2_Missense_Mutation_p.T260I|BTN2A2_uc011dki.1_Missense_Mutation_p.T9I	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	260	Extracellular (Potential).				negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						GTCATCCTGACCGCATCTCCC	0.468													14	77	---	---	---	---	PASS
BTN3A3	10384	broad.mit.edu	37	6	26448623	26448623	+	Missense_Mutation	SNP	G	T	T	rs140949337		TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:26448623G>T	uc003nhz.2	+	6	1043	c.863G>T	c.(862-864)CGA>CTA	p.R288L	BTN3A3_uc003nia.2_Missense_Mutation_p.R246L|BTN3A3_uc011dkn.1_Missense_Mutation_p.R246L	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	288	Cytoplasmic (Potential).					integral to membrane					0						GAAAGAGAGCGAGAGATGAAA	0.493													5	58	---	---	---	---	PASS
OR14J1	442191	broad.mit.edu	37	6	29274478	29274478	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:29274478G>C	uc011dln.1	+	1	12	c.12G>C	c.(10-12)TTG>TTC	p.L4F		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGGTCAATTTGACTTCAATGA	0.398													32	74	---	---	---	---	PASS
TUBB	203068	broad.mit.edu	37	6	30691668	30691668	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:30691668G>T	uc003nrl.2	+	4	956	c.829G>T	c.(829-831)GGA>TGA	p.G277*	TUBB_uc003nrk.1_Nonsense_Mutation_p.G277*|TUBB_uc011dmq.1_Nonsense_Mutation_p.G205*	NM_178014	NP_821133	P07437	TBB5_HUMAN	tubulin, beta	277					cellular component movement|G2/M transition of mitotic cell cycle|microtubule-based movement|natural killer cell mediated cytotoxicity|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|MHC class I protein binding			ovary(1)	1					Colchicine(DB01394)|Vinblastine(DB00570)|Vincristine(DB00541)|Vinorelbine(DB00361)	CACCAGCCGTGGAAGCCAGCA	0.587													6	66	---	---	---	---	PASS
SYNGAP1	8831	broad.mit.edu	37	6	33411229	33411229	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:33411229G>A	uc011dri.1	+	15	3095	c.2900G>A	c.(2899-2901)CGA>CAA	p.R967Q	SYNGAP1_uc010juy.2_Missense_Mutation_p.R938Q|SYNGAP1_uc010juz.2_Missense_Mutation_p.R679Q	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	967					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						caccaccaccGAGGTGGAGAG	0.562													18	71	---	---	---	---	PASS
PACSIN1	29993	broad.mit.edu	37	6	34498116	34498116	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:34498116G>A	uc003ojo.2	+	7	1091	c.885G>A	c.(883-885)ATG>ATA	p.M295I	PACSIN1_uc003ojp.2_Missense_Mutation_p.M295I	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	295					endocytosis		protein kinase activity				0						GCCCCGGCATGCCCATGAACT	0.617													12	13	---	---	---	---	PASS
CPNE5	57699	broad.mit.edu	37	6	36714347	36714347	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:36714347G>A	uc003omr.1	-	16	1093	c.1026C>T	c.(1024-1026)CCC>CCT	p.P342P	CPNE5_uc003omp.1_Silent_p.P50P|CPNE5_uc010jwn.1_5'UTR|CPNE5_uc003omq.1_5'UTR	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	342	VWFA.									skin(1)	1						TGGACTGTGAGGGGTTCCCTG	0.592													7	20	---	---	---	---	PASS
KCNK17	89822	broad.mit.edu	37	6	39271746	39271746	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:39271746G>T	uc003ooo.2	-	4	815	c.675C>A	c.(673-675)GGC>GGA	p.G225G	KCNK17_uc003oop.2_Silent_p.G225G	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	225						integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						TCACGTAGTCGCCGAAGCCCA	0.622													4	66	---	---	---	---	PASS
PEX6	5190	broad.mit.edu	37	6	42937458	42937458	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:42937458C>A	uc003otf.2	-	5	1408	c.1315G>T	c.(1315-1317)GAG>TAG	p.E439*	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	439					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			ACCAAGGCCTCCAGGCCTGGA	0.547													5	61	---	---	---	---	PASS
CUL7	9820	broad.mit.edu	37	6	43008367	43008367	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:43008367C>A	uc003otq.2	-	21	4227	c.3924G>T	c.(3922-3924)CTG>CTT	p.L1308L	CUL7_uc010jyg.2_Silent_p.L587L|CUL7_uc011dvb.1_Silent_p.L1392L|CUL7_uc010jyh.2_Silent_p.L301L|KLC4_uc003otr.1_5'Flank	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1308					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TAGAGGTGCTCAGGCTCTGCA	0.612													5	75	---	---	---	---	PASS
XPO5	57510	broad.mit.edu	37	6	43534990	43534990	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:43534990G>T	uc003ovp.2	-	7	961	c.750C>A	c.(748-750)CTC>CTA	p.L250L		NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	250					gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			GTATCTCCAGGAGTTTACAGT	0.453													12	49	---	---	---	---	PASS
GPR111	222611	broad.mit.edu	37	6	47649797	47649797	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:47649797G>T	uc010jzj.1	+	6	1503	c.1502G>T	c.(1501-1503)TGG>TTG	p.W501L	GPR111_uc010jzk.1_Missense_Mutation_p.W433L|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	501	Helical; Name=2; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GCAGATGTGTGGTTCATTGTG	0.438													4	30	---	---	---	---	PASS
BAI3	577	broad.mit.edu	37	6	69349136	69349136	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:69349136G>T	uc003pev.3	+	3	1017	c.569G>T	c.(568-570)GGG>GTG	p.G190V	BAI3_uc010kak.2_Missense_Mutation_p.G190V	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	190	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GAATCATGTGGGATCATGTAT	0.448													6	42	---	---	---	---	PASS
BAI3	577	broad.mit.edu	37	6	69949100	69949100	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:69949100G>T	uc003pev.3	+	20	3244	c.2796G>T	c.(2794-2796)CAG>CAT	p.Q932H	BAI3_uc010kak.2_Missense_Mutation_p.Q932H|BAI3_uc011dxx.1_Missense_Mutation_p.Q138H|BAI3_uc003pex.1_Missense_Mutation_p.Q62H	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	932	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TGGTTGGACAGACTCAGACAC	0.333													5	62	---	---	---	---	PASS
CD109	135228	broad.mit.edu	37	6	74440235	74440235	+	Missense_Mutation	SNP	C	T	T	rs137899447	by1000genomes	TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:74440235C>T	uc003php.2	+	4	870	c.445C>T	c.(445-447)CGC>TGC	p.R149C	CD109_uc010kaz.2_Missense_Mutation_p.R149C|CD109_uc003phq.2_Missense_Mutation_p.R149C|CD109_uc010kba.2_Intron	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	149						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						AGTGAAGTTTCGCATTGTTAC	0.373													7	38	---	---	---	---	PASS
TPBG	7162	broad.mit.edu	37	6	83075567	83075567	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:83075567G>A	uc003pjn.3	+	3	1825	c.889G>A	c.(889-891)GTC>ATC	p.V297I	TPBG_uc010kbj.2_Missense_Mutation_p.V297I|TPBG_uc003pjo.2_Missense_Mutation_p.V297I	NM_006670	NP_006661	Q13641	TPBG_HUMAN	trophoblast glycoprotein precursor	297	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane				central_nervous_system(1)	1		all_cancers(76;0.000805)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.0897)		BRCA - Breast invasive adenocarcinoma(397;0.107)		CAATCCCTGGGTCTGCGACTG	0.547													15	46	---	---	---	---	PASS
ME1	4199	broad.mit.edu	37	6	84108236	84108236	+	Splice_Site	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:84108236C>A	uc003pjy.2	-	3	319	c.213_splice	c.e3-1	p.R71_splice	ME1_uc011dzb.1_Splice_Site|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1						carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	GAGAAGATACCTGTAAAAATT	0.294													5	39	---	---	---	---	PASS
ZNF292	23036	broad.mit.edu	37	6	87967475	87967475	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:87967475C>A	uc003plm.3	+	8	4169	c.4128C>A	c.(4126-4128)ATC>ATA	p.I1376I		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1376	C2H2-type 8; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		GGAAATTTATCTGTAGCAGGT	0.458													9	23	---	---	---	---	PASS
GABRR1	2569	broad.mit.edu	37	6	89888538	89888538	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:89888538G>T	uc003pna.2	-	10	1846	c.1391C>A	c.(1390-1392)CCA>CAA	p.P464Q	GABRR1_uc011dzv.1_Missense_Mutation_p.P441Q	NM_002042	NP_002033	P24046	GBRR1_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 1	464	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			pancreas(1)	1		all_cancers(76;9.49e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.46e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00917)	Picrotoxin(DB00466)	GTATGCTGCTGGAAAGATGAT	0.398													5	50	---	---	---	---	PASS
MDN1	23195	broad.mit.edu	37	6	90428724	90428724	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:90428724C>A	uc003pnn.1	-	42	6199	c.6083G>T	c.(6082-6084)GGG>GTG	p.G2028V		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2028					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AACACAGCTCCCACGGGAAAG	0.517													7	36	---	---	---	---	PASS
SLC22A16	85413	broad.mit.edu	37	6	110763720	110763720	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:110763720C>T	uc003puf.2	-	4	977	c.910G>A	c.(910-912)GCA>ACA	p.A304T	SLC22A16_uc003pue.2_Missense_Mutation_p.A285T	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	304					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		ATTTTTTGTGCTTCTTCATAT	0.468													11	44	---	---	---	---	PASS
NKAIN2	154215	broad.mit.edu	37	6	124604269	124604269	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:124604269G>T	uc003pzo.2	+	2	450	c.173G>T	c.(172-174)AGA>ATA	p.R58I	NKAIN2_uc003pzn.1_Missense_Mutation_p.R58I|NKAIN2_uc003pzp.2_Missense_Mutation_p.R57I|NKAIN2_uc010keq.2_Missense_Mutation_p.R58I|NKAIN2_uc010ker.2_5'UTR|NKAIN2_uc010kep.1_RNA	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	58						integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		ATTCAATATAGACCTCGTTAC	0.333													10	306	---	---	---	---	PASS
NCOA7	135112	broad.mit.edu	37	6	126206305	126206305	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:126206305G>T	uc010kes.2	+	10	1149	c.700G>T	c.(700-702)GGT>TGT	p.G234C	NCOA7_uc003qae.3_Missense_Mutation_p.G234C|NCOA7_uc003qah.2_Missense_Mutation_p.G234C|NCOA7_uc003qai.2_Missense_Mutation_p.G234C|NCOA7_uc010ket.2_Missense_Mutation_p.G130C|NCOA7_uc003qag.2_Missense_Mutation_p.G234C	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1	234					cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		TCTCCTGCAGGGTGTGGTTGG	0.443													15	805	---	---	---	---	PASS
TRMT11	60487	broad.mit.edu	37	6	126329537	126329537	+	Splice_Site	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:126329537G>T	uc003qam.2	+	8	801	c.680_splice	c.e8-1	p.G227_splice	TRMT11_uc003qan.2_Splice_Site|TRMT11_uc010kev.2_Splice_Site_p.G227_splice	NM_001031712	NP_001026882	Q7Z4G4	TRM11_HUMAN	tRNA methyltransferase 11						tRNA processing		methyltransferase activity|nucleic acid binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0356)		TGATTTTTCAGGTGGCCTGCT	0.423													12	576	---	---	---	---	PASS
ARHGAP18	93663	broad.mit.edu	37	6	129929122	129929122	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:129929122C>G	uc003qbr.2	-	9	1287	c.1198G>C	c.(1198-1200)GCC>CCC	p.A400P	ARHGAP18_uc011ebw.1_Missense_Mutation_p.A400P	NM_033515	NP_277050	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18	400	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			ovary(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		AGCAGGCTGGCGGCATCATGC	0.453													10	49	---	---	---	---	PASS
EPB41L2	2037	broad.mit.edu	37	6	131277400	131277400	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:131277400G>T	uc003qch.2	-	2	408	c.226C>A	c.(226-228)CGG>AGG	p.R76R	EPB41L2_uc003qcg.1_Silent_p.R76R|EPB41L2_uc011eby.1_Silent_p.R76R|EPB41L2_uc003qci.2_Silent_p.R76R|EPB41L2_uc010kfk.2_Silent_p.R76R|EPB41L2_uc010kfl.1_Silent_p.R76R	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	76					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		GGTATGAACCGAGAAATACCC	0.348													6	92	---	---	---	---	PASS
SLC35D3	340146	broad.mit.edu	37	6	137245753	137245753	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:137245753C>A	uc003qhe.2	+	2	1335	c.1170C>A	c.(1168-1170)CTC>CTA	p.L390L		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	390					carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		ATGCTTACCTCGAGGTATGGA	0.532													4	49	---	---	---	---	PASS
CCDC28A	25901	broad.mit.edu	37	6	139094876	139094876	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:139094876C>A	uc003qie.2	+	1	220	c.65C>A	c.(64-66)GCA>GAA	p.A22E	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	22											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		CCGCTTGGGGCATGGAGGCTG	0.617													10	38	---	---	---	---	PASS
SYNE1	23345	broad.mit.edu	37	6	152861157	152861157	+	Splice_Site	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:152861157C>A	uc010kiw.2	-	4	670	c.68_splice	c.e4-1	p.D23_splice	SYNE1_uc003qot.3_Splice_Site_p.D23_splice|SYNE1_uc003qou.3_Splice_Site_p.D23_splice|SYNE1_uc010kjb.1_Splice_Site_p.D23_splice|SYNE1_uc003qpa.1_Splice_Site_p.D23_splice	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1						cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCTTGCTCATCTAGAAGGAAA	0.343										HNSCC(10;0.0054)			17	46	---	---	---	---	PASS
LPA	4018	broad.mit.edu	37	6	161007644	161007644	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr6:161007644G>T	uc003qtl.2	-	26	4086	c.3966C>A	c.(3964-3966)TAC>TAA	p.Y1322*		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3830	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GATTCCTGCAGTAGTTCCTGG	0.483													7	49	---	---	---	---	PASS
GPER	2852	broad.mit.edu	37	7	1131687	1131687	+	Missense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:1131687T>A	uc010ksd.1	+	2	712	c.323T>A	c.(322-324)CTG>CAG	p.L108Q	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPER_uc003sjz.1_Missense_Mutation_p.L108Q|GPER_uc003ska.1_Missense_Mutation_p.L108Q|GPER_uc003skb.2_Missense_Mutation_p.L108Q	NM_001098201	NP_001091671	Q99527	GPER_HUMAN	G protein-coupled receptor 30	108	Helical; Name=2; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;2.32e-16)		GACCTCATCCTGGTGGCCGAC	0.577													9	76	---	---	---	---	PASS
KIAA0415	9907	broad.mit.edu	37	7	4831000	4831000	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:4831000G>A	uc003sne.2	+	17	2491	c.2408G>A	c.(2407-2409)GGC>GAC	p.G803D	KIAA0415_uc010ksp.2_RNA|KIAA0415_uc003snf.2_Missense_Mutation_p.G280D	NM_014855	NP_055670	O43299	K0415_HUMAN	hypothetical protein LOC9907	803					cell death|double-strand break repair via homologous recombination	cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.091)|OV - Ovarian serous cystadenocarcinoma(56;8.35e-15)		AGGGAGGCCGGCCTCATGCCA	0.677													5	8	---	---	---	---	PASS
AIMP2	7965	broad.mit.edu	37	7	6054848	6054848	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:6054848G>C	uc003spo.2	+	2	320	c.207G>C	c.(205-207)TTG>TTC	p.L69F		NM_006303	NP_006294	Q13155	AIMP2_HUMAN	aminoacyl tRNA synthetase complex-interacting	69					apoptosis|cell differentiation|multicellular organismal development|tRNA aminoacylation for protein translation	cytosol|nucleus	protein binding			ovary(1)	1						TGTATGAGTTGAAAGCTGCAG	0.433													28	111	---	---	---	---	PASS
TWIST1	7291	broad.mit.edu	37	7	19156538	19156538	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:19156538G>T	uc003sum.2	-	1	758	c.407C>A	c.(406-408)CCC>CAC	p.P136H		NM_000474	NP_000465	Q15672	TWST1_HUMAN	twist	136	Helix-loop-helix motif.				aortic valve morphogenesis|cellular response to hypoxia|embryonic camera-type eye formation|embryonic cranial skeleton morphogenesis|eyelid development in camera-type eye|muscle organ development|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of histone phosphorylation|negative regulation of osteoblast differentiation|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of cell motility|positive regulation of epithelial to mesenchymal transition|positive regulation of fatty acid beta-oxidation|positive regulation of monocyte chemotactic protein-1 production|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of tumor necrosis factor production|regulation of bone mineralization	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding RNA polymerase II transcription factor activity				0						GGGCAGCGTGGGGATGATCTT	0.647									Saethre-Chotzen_syndrome				21	34	---	---	---	---	PASS
NPC1L1	29881	broad.mit.edu	37	7	44556482	44556482	+	Silent	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:44556482G>C	uc003tlb.2	-	17	3476	c.3420C>G	c.(3418-3420)CTC>CTG	p.L1140L	NPC1L1_uc003tlc.2_Silent_p.L1113L|NPC1L1_uc011kbw.1_Silent_p.L1067L|NPC1L1_uc003tla.2_Intron	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1140	Helical; Name=10; (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	TGAGCATGAAGAGCCCCTCAG	0.607													7	27	---	---	---	---	PASS
CCM2	83605	broad.mit.edu	37	7	45112369	45112369	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:45112369G>T	uc003tmo.2	+	7	936	c.790G>T	c.(790-792)GAA>TAA	p.E264*	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Nonsense_Mutation_p.E206*|CCM2_uc003tmq.2_Intron|CCM2_uc003tmr.2_Nonsense_Mutation_p.E173*|CCM2_uc011kcc.1_3'UTR|CCM2_uc003tms.2_Nonsense_Mutation_p.E285*	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	264					endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						CTACGAGGTGGAAGCCAGCAC	0.522									Familial_Cerebral_Cavernous_Angioma				17	44	---	---	---	---	PASS
KCTD7	154881	broad.mit.edu	37	7	66103967	66103967	+	Silent	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:66103967C>G	uc003tve.2	+	4	780	c.618C>G	c.(616-618)CTC>CTG	p.L206L	RABGEF1_uc003tvf.2_Intron|KCTD7_uc003tvd.3_Silent_p.L206L	NM_153033	NP_694578	Q96MP8	KCTD7_HUMAN	potassium channel tetramerisation domain	206						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)	3						AGTGTCCGCTCCTCAACTCCC	0.602													239	29	---	---	---	---	PASS
SEMA3D	223117	broad.mit.edu	37	7	84666276	84666276	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:84666276C>A	uc003uic.2	-	10	1160	c.1120G>T	c.(1120-1122)GCT>TCT	p.A374S	SEMA3D_uc010led.2_Missense_Mutation_p.A374S|SEMA3D_uc003uib.2_Missense_Mutation_p.A13S	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	374	Sema.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						TCCTTATGAGCATATGGACCA	0.403													8	42	---	---	---	---	PASS
CCDC132	55610	broad.mit.edu	37	7	92935226	92935226	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:92935226G>T	uc003umo.2	+	18	1667	c.1539G>T	c.(1537-1539)TTG>TTT	p.L513F	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.L483F|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.L233F	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	513											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			CAGTGACCTTGTTTGAGCAGT	0.403													15	31	---	---	---	---	PASS
DLX6	1750	broad.mit.edu	37	7	96639256	96639256	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:96639256C>T	uc003uom.2	+	4	695	c.695C>T	c.(694-696)TCG>TTG	p.S232L	DLX6AS_uc003uol.2_Intron|DLX6AS_uc010lfo.1_Intron	NM_005222	NP_005213	P56179	DLX6_HUMAN	distal-less homeobox 6	142					nervous system development|skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					GTTTCTGCCTCGGCCAAGGGT	0.617													9	8	---	---	---	---	PASS
TRIM56	81844	broad.mit.edu	37	7	100731192	100731192	+	Missense_Mutation	SNP	A	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:100731192A>C	uc003uxq.2	+	3	830	c.599A>C	c.(598-600)CAC>CCC	p.H200P	TRIM56_uc003uxr.2_Missense_Mutation_p.H200P	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	200	B box-type 2.				defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					CACCTGGACCACCCCTGCCTG	0.692													4	3	---	---	---	---	PASS
HBP1	26959	broad.mit.edu	37	7	106836436	106836436	+	Missense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:106836436T>A	uc003vdy.2	+	9	1411	c.1225T>A	c.(1225-1227)TCT>ACT	p.S409T	HBP1_uc011klv.1_Missense_Mutation_p.S419T|HBP1_uc003vdz.2_Missense_Mutation_p.S409T|HBP1_uc003vea.2_Missense_Mutation_p.S409T|HBP1_uc003veb.1_Missense_Mutation_p.S409T	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	409					cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						ATCACAGCTCTCTTCCAATTC	0.458													22	35	---	---	---	---	PASS
IQUB	154865	broad.mit.edu	37	7	123109370	123109370	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:123109370G>A	uc003vkn.2	-	9	2056	c.1479C>T	c.(1477-1479)ATC>ATT	p.I493I	IQUB_uc003vko.2_Silent_p.I493I|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Silent_p.I493I	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	493										ovary(3)|large_intestine(1)	4						CTCTGGCTCTGATGGTGAACT	0.353													22	33	---	---	---	---	PASS
ATP6V0A4	50617	broad.mit.edu	37	7	138429990	138429990	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:138429990G>A	uc003vuf.2	-	13	1594	c.1356C>T	c.(1354-1356)ATC>ATT	p.I452I	ATP6V0A4_uc003vug.2_Silent_p.I452I|ATP6V0A4_uc003vuh.2_Silent_p.I452I	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	452	Helical; (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CCATAAGTAGGATCAGATAGC	0.507													33	62	---	---	---	---	PASS
OR6B1	135946	broad.mit.edu	37	7	143701805	143701805	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr7:143701805G>A	uc003wdt.1	+	1	716	c.716G>A	c.(715-717)TGT>TAT	p.C239Y		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TTCTCCACTTGTGCCTCCCAT	0.433													25	69	---	---	---	---	PASS
PPP1R3B	79660	broad.mit.edu	37	8	8998583	8998583	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:8998583G>T	uc003wsn.3	-	2	744	c.579C>A	c.(577-579)TCC>TCA	p.S193S	PPP1R3B_uc003wso.3_Silent_p.S192S	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	193	CBM21.				glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		TGATGTCGAAGGAGAACGTGT	0.478													6	79	---	---	---	---	PASS
ADAM7	8756	broad.mit.edu	37	8	24324415	24324415	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:24324415G>T	uc003xeb.2	+	6	606	c.493G>T	c.(493-495)GGT>TGT	p.G165C	ADAM7_uc003xea.1_Missense_Mutation_p.G165C	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	165	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GGTGCCGTATGGTGCCAATTA	0.368													5	82	---	---	---	---	PASS
WRN	7486	broad.mit.edu	37	8	31015003	31015003	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:31015003G>C	uc003xio.3	+	33	4727	c.3939G>C	c.(3937-3939)CAG>CAC	p.Q1313H	WRN_uc010lvk.2_Missense_Mutation_p.Q780H	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1313					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		CAGAGGTTCAGAAGATTATTG	0.502			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				15	18	---	---	---	---	PASS
UNC5D	137970	broad.mit.edu	37	8	35608161	35608161	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:35608161G>T	uc003xjr.1	+	13	2325	c.1997G>T	c.(1996-1998)TGT>TTT	p.C666F	UNC5D_uc003xjs.1_Missense_Mutation_p.C661F|UNC5D_uc003xju.1_Missense_Mutation_p.C242F	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	666	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CCCTTTGCGTGTCATGTGCTC	0.488													149	63	---	---	---	---	PASS
UNC5D	137970	broad.mit.edu	37	8	35624481	35624481	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:35624481T>C	uc003xjr.1	+	15	2703	c.2375T>C	c.(2374-2376)CTG>CCG	p.L792P	UNC5D_uc003xjs.1_Missense_Mutation_p.L787P|UNC5D_uc003xju.1_Missense_Mutation_p.L368P	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	792	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GCCTTCTCCCTGGAGCGTTAT	0.582													14	122	---	---	---	---	PASS
ADAM18	8749	broad.mit.edu	37	8	39495087	39495087	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:39495087T>C	uc003xni.2	+	9	692	c.692T>C	c.(691-693)CTG>CCG	p.L231P	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.L207P	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	231	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ACTGTTATACTGTCTTCCTTG	0.313													8	33	---	---	---	---	PASS
MYST3	7994	broad.mit.edu	37	8	41804152	41804152	+	Silent	SNP	A	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:41804152A>C	uc010lxb.2	-	13	2497	c.1953T>G	c.(1951-1953)CCT>CCG	p.P651P	MYST3_uc010lxc.2_Silent_p.P651P|MYST3_uc003xon.3_Silent_p.P651P|MYST3_uc010lxd.2_Silent_p.P651P	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	651	Mediates interaction with BRPF1, required for histone H3 acetyltransferase activity.|Catalytic.|Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GCTGGTATTGAGGAAGAATCA	0.378													7	38	---	---	---	---	PASS
PXDNL	137902	broad.mit.edu	37	8	52387662	52387662	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:52387662C>T	uc003xqu.3	-	7	665	c.564G>A	c.(562-564)CTG>CTA	p.L188L		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	188	LRRCT.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCAGCCACATCAGATCACAGT	0.517													5	34	---	---	---	---	PASS
PREX2	80243	broad.mit.edu	37	8	69002947	69002947	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:69002947G>T	uc003xxv.1	+	20	2274	c.2247G>T	c.(2245-2247)ACG>ACT	p.T749T	PREX2_uc003xxu.1_Silent_p.T749T|PREX2_uc011lez.1_Silent_p.T684T	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	749	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GGCGGCCAACGAAGGTAAGTG	0.473													10	32	---	---	---	---	PASS
PREX2	80243	broad.mit.edu	37	8	69002948	69002948	+	Nonsense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:69002948A>T	uc003xxv.1	+	20	2275	c.2248A>T	c.(2248-2250)AAG>TAG	p.K750*	PREX2_uc003xxu.1_Nonsense_Mutation_p.K750*|PREX2_uc011lez.1_Nonsense_Mutation_p.K685*	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	750	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GCGGCCAACGAAGGTAAGTGG	0.468													9	31	---	---	---	---	PASS
CNGB3	54714	broad.mit.edu	37	8	87751931	87751931	+	Missense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:87751931T>A	uc003ydx.2	-	2	209	c.163A>T	c.(163-165)ACC>TCC	p.T55S		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	55	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding	p.T55P(1)		ovary(2)|pancreas(1)	3						GTTGACTTGGTTTTGAGAGAT	0.313													13	35	---	---	---	---	PASS
CNBD1	168975	broad.mit.edu	37	8	87917412	87917412	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:87917412G>T	uc003ydy.2	+	3	310	c.262G>T	c.(262-264)GAG>TAG	p.E88*		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	88										ovary(3)	3						TTTCAAACAGGAGGAACAAAG	0.368													8	17	---	---	---	---	PASS
RBM12B	389677	broad.mit.edu	37	8	94747128	94747128	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:94747128C>A	uc003yfz.2	-	3	1704	c.1511G>T	c.(1510-1512)CGA>CTA	p.R504L		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	504							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			ATGGTCACCTCGCTCACGTGA	0.403													6	93	---	---	---	---	PASS
TRHR	7201	broad.mit.edu	37	8	110100339	110100339	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:110100339T>C	uc003ymz.3	+	1	614	c.598T>C	c.(598-600)TAT>CAT	p.Y200H		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	200	Helical; Name=5; (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TGGTGTCTTTTATGTTGTGCC	0.388													11	39	---	---	---	---	PASS
SYBU	55638	broad.mit.edu	37	8	110588198	110588198	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:110588198C>A	uc003ynj.3	-	7	1092	c.929G>T	c.(928-930)CGA>CTA	p.R310L	SYBU_uc003yni.3_Missense_Mutation_p.R307L|SYBU_uc003ynk.3_Missense_Mutation_p.R191L|SYBU_uc010mco.2_Missense_Mutation_p.R309L|SYBU_uc003ynl.3_Missense_Mutation_p.R309L|SYBU_uc010mcp.2_Missense_Mutation_p.R310L|SYBU_uc010mcq.2_Missense_Mutation_p.R310L|SYBU_uc003yno.3_Missense_Mutation_p.R191L|SYBU_uc010mcr.2_Missense_Mutation_p.R310L|SYBU_uc003ynm.3_Missense_Mutation_p.R309L|SYBU_uc003ynn.3_Missense_Mutation_p.R309L|SYBU_uc010mcs.2_Missense_Mutation_p.R191L|SYBU_uc010mct.2_Missense_Mutation_p.R310L|SYBU_uc010mcu.2_Missense_Mutation_p.R309L|SYBU_uc003ynp.3_Missense_Mutation_p.R242L|SYBU_uc010mcv.2_Missense_Mutation_p.R310L|SYBU_uc003ynh.3_Missense_Mutation_p.R104L|SYBU_uc011lhw.1_Missense_Mutation_p.R180L	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	310	Sufficient for interaction with STX1A.|Potential.|Sufficient for interaction with KIF5B.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						CCAGTCCTCTCGCATGCGGGC	0.443													4	47	---	---	---	---	PASS
CSMD3	114788	broad.mit.edu	37	8	113303805	113303805	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:113303805A>T	uc003ynu.2	-	56	9067	c.8908T>A	c.(8908-8910)TTT>ATT	p.F2970I	CSMD3_uc003yns.2_Missense_Mutation_p.F2172I|CSMD3_uc003ynt.2_Missense_Mutation_p.F2930I|CSMD3_uc011lhx.1_Missense_Mutation_p.F2801I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2970	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GAAGATCCAAATAAAAAATAT	0.333										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			14	49	---	---	---	---	PASS
PHF20L1	51105	broad.mit.edu	37	8	133816985	133816985	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:133816985G>T	uc003ytt.2	+	8	1172	c.847G>T	c.(847-849)GGT>TGT	p.G283C	PHF20L1_uc003ytr.2_Missense_Mutation_p.G257C|PHF20L1_uc010mdv.2_Missense_Mutation_p.G257C|PHF20L1_uc003yts.2_Missense_Mutation_p.G283C|PHF20L1_uc011lja.1_Missense_Mutation_p.G257C|PHF20L1_uc003ytu.1_RNA|PHF20L1_uc003ytv.2_Missense_Mutation_p.G122C	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	283							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			CAAGATTACTGGTAAACTACA	0.338													8	108	---	---	---	---	PASS
PTK2	5747	broad.mit.edu	37	8	141678480	141678480	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:141678480T>C	uc003yvu.2	-	30	2983	c.2753A>G	c.(2752-2754)GAC>GGC	p.D918G	PTK2_uc011ljp.1_Missense_Mutation_p.D226G|PTK2_uc003yvo.2_Missense_Mutation_p.D546G|PTK2_uc011ljq.1_Missense_Mutation_p.D616G|PTK2_uc003yvp.2_Missense_Mutation_p.D586G|PTK2_uc003yvq.2_Missense_Mutation_p.D423G|PTK2_uc003yvr.2_Missense_Mutation_p.D861G|PTK2_uc003yvs.2_Missense_Mutation_p.D872G|PTK2_uc003yvt.2_Missense_Mutation_p.D940G|PTK2_uc003yvv.2_Missense_Mutation_p.D821G|PTK2_uc011ljr.1_Missense_Mutation_p.D931G	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	918	Interaction with TGFB1I1.|Interaction with RGNEF (By similarity).				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			ATTCGACCGGTCCAGGTTGGC	0.542											OREG0019022	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	43	---	---	---	---	PASS
NFKBIL2	4796	broad.mit.edu	37	8	145667759	145667759	+	Silent	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr8:145667759G>C	uc011llg.1	-	6	630	c.615C>G	c.(613-615)CGC>CGG	p.R205R		NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	205	TPR 5.				cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			CCAGGTTGTAGCGGGCGCGGA	0.647													5	21	---	---	---	---	PASS
C9orf123	90871	broad.mit.edu	37	9	7799633	7799633	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:7799633C>A	uc003zki.2	-	1	146	c.102G>T	c.(100-102)GCG>GCT	p.A34A	C9orf123_uc003zkj.2_Silent_p.A34A			Q96GE9	CI123_HUMAN	Homo sapiens cDNA FLJ46908 fis, clone FEBRA2004867.	34						integral to membrane					0		all_cancers(3;0.0539)|Lung NSC(3;3.36e-05)|all_lung(3;0.000156)|all_epithelial(3;0.0356)		GBM - Glioblastoma multiforme(50;0.0561)		GGGAGGTCGGCGCTCCGGGTG	0.672													6	11	---	---	---	---	PASS
PLIN2	123	broad.mit.edu	37	9	19120960	19120960	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:19120960G>T	uc003zno.2	-	5	692	c.513C>A	c.(511-513)CTC>CTA	p.L171L	PLIN2_uc011lna.1_Silent_p.L143L|PLIN2_uc011lnb.1_Intron	NM_001122	NP_001113	Q99541	PLIN2_HUMAN	adipose differentiation-related protein	171					cellular lipid metabolic process	endoplasmic reticulum|extracellular region|lipid particle				ovary(2)	2						CACTGCTCACGAGCTGCATCA	0.498													4	74	---	---	---	---	PASS
CDKN2A	1029	broad.mit.edu	37	9	21971065	21971065	+	Missense_Mutation	SNP	T	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:21971065T>G	uc003zpk.2	-	2	505	c.293A>C	c.(292-294)CAC>CCC	p.H98P	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.A153A	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	98	ANK 3.		H -> P (in CMM2).|H -> Q (in CMM2).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(13)|p.H98R(2)|p.H83fs*2(2)|p.H98Y(1)|p.H98H(1)|p.H98P(1)|p.L97fs*21(1)|p.T93_D105del(1)|p.A68fs*3(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CCCGGCCCGGTGCAGCACCAC	0.746		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			4	3	---	---	---	---	PASS
C9orf128	392307	broad.mit.edu	37	9	35825821	35825821	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:35825821C>A	uc010mlc.2	-	2	623	c.338G>T	c.(337-339)CGA>CTA	p.R113L	C9orf128_uc003zyj.2_RNA|C9orf128_uc011lpg.1_Missense_Mutation_p.R113L	NM_001012446	NP_001012448	A6H8Z2	CI128_HUMAN	hypothetical protein LOC392307	113											0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			GACATAGTCTCGTGATTGGGG	0.493											OREG0019180	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	281	---	---	---	---	PASS
RECK	8434	broad.mit.edu	37	9	36087870	36087870	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:36087870C>A	uc003zyv.2	+	9	903	c.817C>A	c.(817-819)CCT>ACT	p.P273T	RECK_uc003zyw.2_Missense_Mutation_p.P145T|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	273	5 X Knot repeats.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			ATCTGTTCACCCTGGAGTCAC	0.453													6	90	---	---	---	---	PASS
RECK	8434	broad.mit.edu	37	9	36118794	36118794	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:36118794G>T	uc003zyv.2	+	18	2380	c.2294G>T	c.(2293-2295)GGT>GTT	p.G765V	RECK_uc003zyw.2_Missense_Mutation_p.G637V|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	765	Kazal-like 3.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			GGGCACAATGGTGAGACCTAC	0.542													35	34	---	---	---	---	PASS
TDRD7	23424	broad.mit.edu	37	9	100232913	100232913	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:100232913G>A	uc004axj.2	+	9	1928	c.1703G>A	c.(1702-1704)TGT>TAT	p.C568Y	TDRD7_uc011lux.1_Missense_Mutation_p.C494Y|TDRD7_uc010msp.1_Intron|TDRD7_uc011luy.1_5'UTR	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	568	Tudor 1.				lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				CCGAAGTTTTGTTCACTCTCA	0.318													20	31	---	---	---	---	PASS
ZNF618	114991	broad.mit.edu	37	9	116812065	116812065	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:116812065A>T	uc004bid.2	+	15	2582	c.2483A>T	c.(2482-2484)AAG>ATG	p.K828M	ZNF618_uc004bic.2_Missense_Mutation_p.K735M|ZNF618_uc011lxi.1_Missense_Mutation_p.K795M|ZNF618_uc011lxj.1_Missense_Mutation_p.K796M|ZNF618_uc010mvb.2_Missense_Mutation_p.K418M	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	828					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATCATCGGCAAGGTCTGTGAG	0.642													11	49	---	---	---	---	PASS
TRIM32	22954	broad.mit.edu	37	9	119461418	119461418	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:119461418G>T	uc004bjx.2	+	2	1555	c.1397G>T	c.(1396-1398)AGG>ATG	p.R466M	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Missense_Mutation_p.R466M	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	466	NHL 3.				fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						GCCTGTCACAGGAGCCAGCTG	0.512									Bardet-Biedl_syndrome				6	75	---	---	---	---	PASS
OR1L6	392390	broad.mit.edu	37	9	125512589	125512589	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:125512589C>A	uc011lzc.1	+	1	571	c.571C>A	c.(571-573)CTA>ATA	p.L191I		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	191	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATCTCCCACCTACATTCCCT	0.507													6	87	---	---	---	---	PASS
GARNL3	84253	broad.mit.edu	37	9	130098406	130098406	+	Splice_Site	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:130098406G>T	uc011mae.1	+	11	1275	c.874_splice	c.e11-1	p.V292_splice	GARNL3_uc011mad.1_Splice_Site_p.V270_splice|GARNL3_uc004bqt.1_Splice_Site_p.V73_splice	NM_032293	NP_115669	Q5VVW2	GARL3_HUMAN	GTPase activating Rap/RanGAP domain-like 3						regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity|small GTPase regulator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTCACTACAGGTGGAAAGGA	0.423													5	68	---	---	---	---	PASS
RAPGEF1	2889	broad.mit.edu	37	9	134471736	134471736	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:134471736C>G	uc004cbc.2	-	14	2210	c.2080G>C	c.(2080-2082)GGA>CGA	p.G694R	RAPGEF1_uc004cbb.2_Missense_Mutation_p.G712R|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Missense_Mutation_p.G869R|RAPGEF1_uc004cbd.2_Missense_Mutation_p.G699R	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	694	N-terminal Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		CCAGATCCTCCGCGGACGTCC	0.552													30	19	---	---	---	---	PASS
RXRA	6256	broad.mit.edu	37	9	137293518	137293518	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:137293518G>T	uc004cfb.2	+	2	231	c.69G>T	c.(67-69)ACG>ACT	p.T23T	RXRA_uc004cfa.1_Missense_Mutation_p.G74W	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	23	Modulating (By similarity).				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	CCTCCCCGACGGGGCGAGGCT	0.657													28	24	---	---	---	---	PASS
EHMT1	79813	broad.mit.edu	37	9	140637893	140637893	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr9:140637893G>T	uc011mfc.1	+	5	931	c.894G>T	c.(892-894)CTG>CTT	p.L298L	EHMT1_uc004coa.2_Silent_p.L298L|EHMT1_uc004cob.1_Silent_p.L267L|EHMT1_uc010ncn.1_RNA	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	298					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		CCTATAGCCTGGTTCCTAAGA	0.318													5	48	---	---	---	---	PASS
FBXO18	84893	broad.mit.edu	37	10	5959446	5959446	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:5959446G>A	uc001iis.2	+	11	1947	c.1852G>A	c.(1852-1854)GAG>AAG	p.E618K	FBXO18_uc001iir.2_Missense_Mutation_p.E544K|FBXO18_uc009xig.2_Missense_Mutation_p.E544K|FBXO18_uc001iit.2_Missense_Mutation_p.E669K	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	618					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GTGCACAGAAGAGGCGCACCA	0.562													7	15	---	---	---	---	PASS
PFKFB3	5209	broad.mit.edu	37	10	6263484	6263484	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:6263484C>T	uc001ije.2	+	9	1356	c.972C>T	c.(970-972)ATC>ATT	p.I324I	PFKFB3_uc001ijd.2_Silent_p.I304I|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Silent_p.I338I|PFKFB3_uc001ijf.2_Silent_p.I324I|PFKFB3_uc001ijg.2_5'Flank|PFKFB3_uc009xij.2_5'Flank|PFKFB3_uc009xik.2_5'Flank|PFKFB3_uc009xil.2_5'Flank	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	324	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						TCAATGAGATCGACGCGGTGA	0.662													6	11	---	---	---	---	PASS
ITIH5	80760	broad.mit.edu	37	10	7679270	7679270	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:7679270G>T	uc001ijq.2	-	5	652	c.573C>A	c.(571-573)ATC>ATA	p.I191I	ITIH5_uc001ijr.1_Silent_p.I191I	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	191					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CGCTCTCCAGGATATTCACGT	0.652													14	34	---	---	---	---	PASS
OLAH	55301	broad.mit.edu	37	10	15107717	15107717	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:15107717C>T	uc001inu.2	+	6	791	c.537C>T	c.(535-537)ATC>ATT	p.I179I	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Silent_p.I232I	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	179					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						GTAGTCCCATCATAAGGGCAG	0.353													6	49	---	---	---	---	PASS
STAM	8027	broad.mit.edu	37	10	17730044	17730044	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:17730044G>T	uc001ipj.1	+	5	532	c.316G>T	c.(316-318)GAA>TAA	p.E106*	STAM_uc010qcf.1_5'UTR	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	106	VHS.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						TAAAGTATGTGAAAAATTAAA	0.303													5	84	---	---	---	---	PASS
SLC39A12	221074	broad.mit.edu	37	10	18284589	18284589	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:18284589G>T	uc001ipo.2	+	10	1811	c.1538G>T	c.(1537-1539)AGC>ATC	p.S513I	SLC39A12_uc001ipn.2_Missense_Mutation_p.S476I|SLC39A12_uc001ipp.2_Missense_Mutation_p.S512I|SLC39A12_uc010qck.1_Missense_Mutation_p.S379I	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	513	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						AAATAGAAAAGCCCAGAAGAT	0.353													7	63	---	---	---	---	PASS
NEBL	10529	broad.mit.edu	37	10	21108409	21108409	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:21108409C>A	uc001iqi.2	-	20	2396	c.1999G>T	c.(1999-2001)GTA>TTA	p.V667L	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	667	Nebulin 19.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GTCATGCTTACCGGAGTGGCC	0.438													22	115	---	---	---	---	PASS
SLC25A16	8034	broad.mit.edu	37	10	70253288	70253288	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:70253288A>T	uc001joi.2	-	5	913	c.461T>A	c.(460-462)GTT>GAT	p.V154D	SLC25A16_uc010qix.1_Missense_Mutation_p.V20D|SLC25A16_uc010qiy.1_Missense_Mutation_p.V56D|SLC25A16_uc001joj.2_Missense_Mutation_p.V56D	NM_152707	NP_689920	P16260	GDC_HUMAN	solute carrier family 25, member 16	154	Helical; Name=3; (Potential).|Solcar 2.				coenzyme biosynthetic process|pantothenate metabolic process	integral to membrane|mitochondrial inner membrane	binding|solute:solute antiporter activity				0						GCGGACCCTAACCATGTCAAG	0.353													15	53	---	---	---	---	PASS
C10orf54	64115	broad.mit.edu	37	10	73521605	73521605	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:73521605C>T	uc001jsd.2	-	2	402	c.261G>A	c.(259-261)CGG>CGA	p.R87R	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_5'UTR|C10orf54_uc009xqm.2_Intron|C10orf54_uc001jsf.1_Silent_p.R87R	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	87	Ig-like.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TGCGGATGGGCCGGCGCTCTG	0.652													10	38	---	---	---	---	PASS
LCOR	84458	broad.mit.edu	37	10	98715105	98715105	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:98715105A>G	uc001kms.1	+	8	1249	c.728A>G	c.(727-729)AAG>AGG	p.K243R	LCOR_uc001kmr.2_Missense_Mutation_p.K243R|C10orf12_uc009xvg.1_Intron|LCOR_uc001kmt.1_Missense_Mutation_p.K243R|LCOR_uc001kmu.1_Missense_Mutation_p.K243R	NM_032440	NP_115816	Q96JN0	LCOR_HUMAN	ligand dependent nuclear receptor corepressor	243						nucleus	DNA binding			ovary(3)	3		Colorectal(252;0.162)		Epithelial(162;4.43e-09)|all cancers(201;2.96e-07)		GATGGAAAAAAGGATGTGAGC	0.433													19	33	---	---	---	---	PASS
SCD	6319	broad.mit.edu	37	10	102120670	102120670	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:102120670G>C	uc001kqy.2	+	6	1550	c.1060G>C	c.(1060-1062)GGA>CGA	p.G354R		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	354	Cytoplasmic (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		AACCGGAGATGGAAACTACAA	0.473													12	27	---	---	---	---	PASS
SCD	6319	broad.mit.edu	37	10	102120671	102120671	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:102120671G>T	uc001kqy.2	+	6	1551	c.1061G>T	c.(1060-1062)GGA>GTA	p.G354V		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	354	Cytoplasmic (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		ACCGGAGATGGAAACTACAAG	0.473													12	27	---	---	---	---	PASS
COL17A1	1308	broad.mit.edu	37	10	105836091	105836091	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:105836091C>A	uc001kxr.2	-	5	468	c.299G>T	c.(298-300)AGG>ATG	p.R100M	COL17A1_uc010qqv.1_Missense_Mutation_p.R100M|COL17A1_uc009xxp.1_Missense_Mutation_p.R100M	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	100	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GTGAGTTTTCCTTTCAAAGGT	0.522													5	72	---	---	---	---	PASS
PNLIP	5406	broad.mit.edu	37	10	118321053	118321053	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:118321053G>A	uc001lcm.2	+	12	1282	c.1239G>A	c.(1237-1239)CAG>CAA	p.Q413Q		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	413	PLAT.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	GGGACTTGCAGATGGTTAAAT	0.373													17	33	---	---	---	---	PASS
CARS	833	broad.mit.edu	37	11	3050251	3050251	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:3050251G>T	uc001lxh.2	-	8	831	c.757C>A	c.(757-759)CAG>AAG	p.Q253K	CARS_uc001lxe.2_Missense_Mutation_p.Q243K|CARS_uc001lxf.2_Missense_Mutation_p.Q336K|CARS_uc001lxg.2_Missense_Mutation_p.Q253K|CARS_uc010qxo.1_Missense_Mutation_p.Q336K|CARS_uc010qxp.1_Missense_Mutation_p.Q266K|uc001lxi.1_5'Flank	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	253					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	ACAATCTTCTGGACAAAGTTC	0.527			T	ALK	ALCL								6	89	---	---	---	---	PASS
STIM1	6786	broad.mit.edu	37	11	4104506	4104506	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:4104506G>T	uc001lyv.2	+	10	1820	c.1252G>T	c.(1252-1254)GAG>TAG	p.E418*	STIM1_uc009yef.2_Nonsense_Mutation_p.E418*|STIM1_uc009yeg.2_Nonsense_Mutation_p.E245*	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	418	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		AGCACTGAGCGAGGTGACAGC	0.542													4	52	---	---	---	---	PASS
NLRP10	338322	broad.mit.edu	37	11	7981752	7981752	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:7981752G>A	uc001mfv.1	-	2	1424	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	469	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AAAAGTCCTGGAAGCTGATGT	0.512													13	72	---	---	---	---	PASS
ANO3	63982	broad.mit.edu	37	11	26619981	26619981	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:26619981G>T	uc001mqt.3	+	15	1662	c.1517G>T	c.(1516-1518)TGG>TTG	p.W506L	ANO3_uc010rdr.1_Missense_Mutation_p.W490L|ANO3_uc010rds.1_Missense_Mutation_p.W345L|ANO3_uc010rdt.1_Missense_Mutation_p.W360L	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	506	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTTATCGAATGGGAAGAAGAG	0.403													24	61	---	---	---	---	PASS
CD44	960	broad.mit.edu	37	11	35250813	35250813	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:35250813C>A	uc001mvu.2	+	18	2596	c.2162C>A	c.(2161-2163)CCA>CAA	p.P721Q	CD44_uc001mvv.2_Missense_Mutation_p.P678Q|CD44_uc001mvw.2_Missense_Mutation_p.P472Q|CD44_uc001mvx.2_Missense_Mutation_p.P340Q|CD44_uc001mvy.2_Silent_p.S133S|CD44_uc001mwc.3_Missense_Mutation_p.P408Q|CD44_uc010rer.1_Missense_Mutation_p.P319Q|CD44_uc009ykh.2_RNA	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	721	Cytoplasmic (Potential).				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	TCAGAAACTCCAGACCAGTTT	0.478													7	168	---	---	---	---	PASS
SYT13	57586	broad.mit.edu	37	11	45274068	45274068	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:45274068G>A	uc001myq.2	-	4	876	c.750C>T	c.(748-750)TCC>TCT	p.S250S	SYT13_uc009yku.1_Silent_p.S106S	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	250	Cytoplasmic (Potential).|C2 1.					transport vesicle				ovary(1)	1						CGCTGTGACGGGAGAAGCGGT	0.687											OREG0020928	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	33	---	---	---	---	PASS
C11orf49	79096	broad.mit.edu	37	11	47073976	47073976	+	Nonsense_Mutation	SNP	C	T	T	rs14051		TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:47073976C>T	uc001ndp.2	+	3	293	c.187C>T	c.(187-189)CGA>TGA	p.R63*	C11orf49_uc001nds.2_Nonsense_Mutation_p.R63*|C11orf49_uc001ndq.2_Nonsense_Mutation_p.R63*|C11orf49_uc001ndr.2_Nonsense_Mutation_p.R63*|C11orf49_uc010rgx.1_5'UTR|C11orf49_uc010rgy.1_Nonsense_Mutation_p.R54*|C11orf49_uc010rgz.1_Intron	NM_024113	NP_077018	Q9H6J7	CK049_HUMAN	hypothetical protein LOC79096 isoform 3	63											0						CATTCTCTTTCGAGAATTCAG	0.453													28	60	---	---	---	---	PASS
OR4A15	81328	broad.mit.edu	37	11	55136361	55136361	+	Silent	SNP	A	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:55136361A>C	uc010rif.1	+	1	1002	c.1002A>C	c.(1000-1002)GTA>GTC	p.V334V		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	334	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTAAAAAAGTAAGCTTAGCTG	0.368													15	59	---	---	---	---	PASS
OR5D14	219436	broad.mit.edu	37	11	55563596	55563596	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:55563596G>C	uc010rim.1	+	1	565	c.565G>C	c.(565-567)GTG>CTG	p.V189L		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TCTCATCTCTGTGTCTGGCTC	0.448													19	84	---	---	---	---	PASS
OR5D18	219438	broad.mit.edu	37	11	55587562	55587562	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:55587562G>A	uc010rin.1	+	1	457	c.457G>A	c.(457-459)GGA>AGA	p.G153R		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CTATGCCTGGGGAGTCTCATG	0.478													12	84	---	---	---	---	PASS
UBE2L6	9246	broad.mit.edu	37	11	57319960	57319960	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:57319960C>A	uc001nkn.1	-	4	429	c.333G>T	c.(331-333)CTG>CTT	p.L111L	UBE2L6_uc001nko.1_Silent_p.L45L	NM_004223	NP_004214	O14933	UB2L6_HUMAN	ubiquitin-conjugating enzyme E2L 6 isoform 1	111					negative regulation of type I interferon production	cytosol	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						GTCTATTCACCAGCACATTGA	0.572													5	92	---	---	---	---	PASS
OR4D9	390199	broad.mit.edu	37	11	59282973	59282973	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:59282973G>T	uc010rkv.1	+	1	588	c.588G>T	c.(586-588)GAG>GAT	p.E196D		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCACTCTGGAGCTCCTGATGA	0.468													15	72	---	---	---	---	PASS
EIF1AD	84285	broad.mit.edu	37	11	65766854	65766854	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:65766854G>T	uc001ogm.1	-	5	605	c.320C>A	c.(319-321)TCT>TAT	p.S107Y	EIF1AD_uc001ogn.1_Missense_Mutation_p.S107Y|BANF1_uc001ogo.2_5'Flank|BANF1_uc001ogp.2_5'Flank	NM_032325	NP_115701	Q8N9N8	EIF1A_HUMAN	eukaryotic translation initiation factor 1A	107						nucleus	translation initiation factor activity				0						AGCCACTTCAGAGAAGGCCTC	0.498													9	290	---	---	---	---	PASS
C11orf80	79703	broad.mit.edu	37	11	66571479	66571479	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:66571479G>T	uc001ojf.2	+	9	863	c.856G>T	c.(856-858)GGT>TGT	p.G286C	C11orf80_uc001ojg.2_Missense_Mutation_p.G52C|C11orf80_uc001ojh.2_Missense_Mutation_p.G53C|C11orf80_uc001oji.2_Missense_Mutation_p.G53C|C11orf80_uc010rpk.1_Missense_Mutation_p.G121C	NM_024650	NP_078926	Q8N6T0	CK080_HUMAN	hypothetical protein LOC79703	131											0						ACCAAATTTTGGTACAATTGA	0.368													6	171	---	---	---	---	PASS
TPCN2	219931	broad.mit.edu	37	11	68840410	68840410	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:68840410C>T	uc001oos.2	+	13	1287	c.1171C>T	c.(1171-1173)CTC>TTC	p.L391F	TPCN2_uc009ysk.1_RNA|TPCN2_uc001oor.2_Missense_Mutation_p.L306F|TPCN2_uc010rqg.1_Missense_Mutation_p.L391F|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	391	Cytoplasmic (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CAGTGTTCTGCTCTCAGCTGA	0.607													9	27	---	---	---	---	PASS
CHRDL2	25884	broad.mit.edu	37	11	74413877	74413877	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:74413877G>T	uc001ovi.2	-	9	1335	c.1082C>A	c.(1081-1083)TCG>TAG	p.S361*	CHRDL2_uc001ovg.2_Nonsense_Mutation_p.S245*|CHRDL2_uc001ovh.2_Nonsense_Mutation_p.S361*|CHRDL2_uc001ovj.1_RNA|CHRDL2_uc001ovk.1_Nonsense_Mutation_p.S296*			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	361					cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					CACCAAGTCCGAGGCCTCGTG	0.632											OREG0021223	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	60	---	---	---	---	PASS
USP35	57558	broad.mit.edu	37	11	77921353	77921353	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:77921353A>T	uc009yva.1	+	10	2698	c.2452A>T	c.(2452-2454)ATG>TTG	p.M818L	USP35_uc001oze.2_Missense_Mutation_p.M574L|USP35_uc001ozc.2_Missense_Mutation_p.M386L|USP35_uc010rsp.1_Missense_Mutation_p.M250L|USP35_uc001ozd.2_Missense_Mutation_p.M429L|USP35_uc001ozf.2_Missense_Mutation_p.M549L	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	818					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			CCTGCGCACCATGCGGCGCCG	0.647													12	41	---	---	---	---	PASS
FAT3	120114	broad.mit.edu	37	11	92531931	92531931	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:92531931C>G	uc001pdj.3	+	9	5769	c.5752C>G	c.(5752-5754)CTG>GTG	p.L1918V		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1918	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACCCCCTGAACTGACATACAG	0.423										TCGA Ovarian(4;0.039)			17	39	---	---	---	---	PASS
FAT3	120114	broad.mit.edu	37	11	92533017	92533017	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:92533017G>T	uc001pdj.3	+	9	6855	c.6838G>T	c.(6838-6840)GTA>TTA	p.V2280L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2280	Cadherin 20.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGTTAATGATGTAAATGACAA	0.418										TCGA Ovarian(4;0.039)			11	35	---	---	---	---	PASS
SORL1	6653	broad.mit.edu	37	11	121460075	121460075	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:121460075G>C	uc001pxx.2	+	29	4134	c.4054G>C	c.(4054-4056)GAT>CAT	p.D1352H	SORL1_uc010rzp.1_Missense_Mutation_p.D198H|SORL1_uc010rzq.1_5'Flank	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1352	Extracellular (Potential).|LDL-receptor class A 7.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TGATTGCGGCGATTATTCTGA	0.483													31	92	---	---	---	---	PASS
GRAMD1B	57476	broad.mit.edu	37	11	123476185	123476185	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:123476185C>A	uc001pyx.2	+	9	1222	c.893C>A	c.(892-894)TCG>TAG	p.S298*	GRAMD1B_uc001pyw.2_Nonsense_Mutation_p.S305*|GRAMD1B_uc010rzw.1_Nonsense_Mutation_p.S258*|GRAMD1B_uc010rzx.1_Nonsense_Mutation_p.S258*|GRAMD1B_uc009zbe.1_Nonsense_Mutation_p.S294*|GRAMD1B_uc001pyy.2_5'Flank	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	298						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		GCCCCCGTCTCGGTATGGGCA	0.562													4	81	---	---	---	---	PASS
ARHGAP32	9743	broad.mit.edu	37	11	128839232	128839232	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:128839232G>A	uc009zcp.2	-	22	5834	c.5834C>T	c.(5833-5835)TCC>TTC	p.S1945F	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.S904F|ARHGAP32_uc001qez.2_Missense_Mutation_p.S1596F	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1945	Interaction with FYN.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CATCTCTTTGGAGAGCCTTAC	0.507													15	41	---	---	---	---	PASS
VPS26B	112936	broad.mit.edu	37	11	134114844	134114844	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr11:134114844C>T	uc001qhe.2	+	5	1190	c.734C>T	c.(733-735)CCG>CTG	p.P245L		NM_052875	NP_443107	Q4G0F5	VP26B_HUMAN	vacuolar protein sorting 26 homolog B	245					protein transport|vacuolar transport	cytosol|retromer complex					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;2.43e-10)|all cancers(11;2.94e-09)|BRCA - Breast invasive adenocarcinoma(10;9.57e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00164)|Lung(977;0.216)		GAGTCCATCCCGATCCGGCTC	0.582											OREG0021548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	28	---	---	---	---	PASS
VWF	7450	broad.mit.edu	37	12	6058963	6058963	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:6058963G>T	uc001qnn.1	-	51	8492	c.8242C>A	c.(8242-8244)CAC>AAC	p.H2748N	VWF_uc010set.1_3'UTR	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2748	CTCK.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TGGCAGTAGTGGATATCCACC	0.522													5	67	---	---	---	---	PASS
ITPR2	3709	broad.mit.edu	37	12	26780971	26780971	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:26780971G>T	uc001rhg.2	-	23	3476	c.3059C>A	c.(3058-3060)CCA>CAA	p.P1020Q		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1020	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GATACCTGATGGTAGTAAAGT	0.318													13	204	---	---	---	---	PASS
BICD1	636	broad.mit.edu	37	12	32490544	32490544	+	Silent	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:32490544C>G	uc001rku.2	+	7	2445	c.2364C>G	c.(2362-2364)CTC>CTG	p.L788L	BICD1_uc001rkv.2_Silent_p.L788L|BICD1_uc010skd.1_RNA|BICD1_uc001rkw.1_Silent_p.L70L	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	788	Potential.|Interacts with RAB6A.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			AGCAAAAACTCGCCCTGACCC	0.498													12	38	---	---	---	---	PASS
SLC2A13	114134	broad.mit.edu	37	12	40422151	40422151	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:40422151C>T	uc010skm.1	-	3	928	c.877G>A	c.(877-879)GAT>AAT	p.D293N	SLC2A13_uc001rmf.2_Missense_Mutation_p.D293N	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	293	Cytoplasmic (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				TTGATGCTATCATATTCCTCA	0.383										HNSCC(50;0.14)			30	83	---	---	---	---	PASS
TMEM106C	79022	broad.mit.edu	37	12	48360006	48360006	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:48360006G>T	uc001rqp.2	+	5	661	c.546G>T	c.(544-546)GAG>GAT	p.E182D	TMEM106C_uc001rqo.2_Intron|TMEM106C_uc001rqr.2_Missense_Mutation_p.E182D|TMEM106C_uc001rqq.2_Intron	NM_024056	NP_076961	Q9BVX2	T106C_HUMAN	transmembrane protein 106C isoform a	182						endoplasmic reticulum membrane|integral to membrane					0		Acute lymphoblastic leukemia(13;0.11)		GBM - Glioblastoma multiforme(48;0.241)		CTCGGAGTGAGCAACTGGTAT	0.493													8	33	---	---	---	---	PASS
MLL2	8085	broad.mit.edu	37	12	49420064	49420064	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:49420064G>T	uc001rta.3	-	48	15685	c.15685C>A	c.(15685-15687)CGC>AGC	p.R5229S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5229	FYR N-terminal.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ATAGAACAGCGATAGCAGCAG	0.582			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			4	53	---	---	---	---	PASS
MLL2	8085	broad.mit.edu	37	12	49446494	49446494	+	Splice_Site	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:49446494T>A	uc001rta.3	-	9	1113	c.1113_splice	c.e9-1	p.R371_splice		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2						chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGTGAAAATCTGCAGAGGGTA	0.597			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			6	14	---	---	---	---	PASS
LMBR1L	55716	broad.mit.edu	37	12	49491879	49491879	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:49491879C>A	uc001rth.3	-	16	1592	c.1250G>T	c.(1249-1251)CGC>CTC	p.R417L	LMBR1L_uc001rtg.3_Missense_Mutation_p.R412L|LMBR1L_uc001rti.3_Missense_Mutation_p.R397L	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	417	Extracellular (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						CAGGTCAAAGCGAGTGAGCCC	0.557											OREG0021783	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	52	132	---	---	---	---	PASS
KRT77	374454	broad.mit.edu	37	12	53091605	53091605	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:53091605C>A	uc001saw.2	-	2	648	c.619G>T	c.(619-621)GGA>TGA	p.G207*	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	207	Linker 1.|Rod.					keratin filament	structural molecule activity			ovary(1)	1						TTGTTGGTTCCAGTTGAGGTG	0.567													7	169	---	---	---	---	PASS
SOAT2	8435	broad.mit.edu	37	12	53516877	53516877	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:53516877C>T	uc001sbv.2	+	13	1337	c.1249C>T	c.(1249-1251)CGG>TGG	p.R417W	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	417					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						CCTTGGTGCCCGGGCCCGAGG	0.532													7	9	---	---	---	---	PASS
CSAD	51380	broad.mit.edu	37	12	53565707	53565707	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:53565707G>A	uc001sby.2	-	6	536	c.410C>T	c.(409-411)GCC>GTC	p.A137V	CSAD_uc001sbw.2_Intron|CSAD_uc009zmt.2_5'UTR|CSAD_uc010snx.1_Missense_Mutation_p.A164V|CSAD_uc001sbz.2_Missense_Mutation_p.A137V|CSAD_uc009zmu.2_Intron|CSAD_uc001sca.3_RNA|CSAD_uc010sny.1_Missense_Mutation_p.A137V	NM_015989	NP_057073	Q9Y600	CSAD_HUMAN	cysteine sulfinic acid decarboxylase	137					carboxylic acid metabolic process		pyridoxal phosphate binding|sulfinoalanine decarboxylase activity			ovary(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	GCCCACCAGGGCCCGCAGTTT	0.557									Hereditary_Prostate_Cancer				10	43	---	---	---	---	PASS
ITGA5	3678	broad.mit.edu	37	12	54792386	54792386	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:54792386G>T	uc001sga.2	-	28	3006	c.2938C>A	c.(2938-2940)CGT>AGT	p.R980S		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	980	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CTCACCTGACGCTCTTTTTGG	0.582													9	20	---	---	---	---	PASS
HELB	92797	broad.mit.edu	37	12	66725230	66725230	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:66725230C>T	uc001sti.2	+	12	2995	c.2967C>T	c.(2965-2967)GTC>GTT	p.V989V	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	989					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		TCCCTGTAGTCACAGACCACG	0.562													7	31	---	---	---	---	PASS
PTPRB	5787	broad.mit.edu	37	12	70928645	70928645	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:70928645C>T	uc001swb.3	-	28	5548	c.5518G>A	c.(5518-5520)GAG>AAG	p.E1840K	uc001svz.2_Intron|PTPRB_uc010sto.1_Missense_Mutation_p.E1750K|PTPRB_uc010stp.1_Missense_Mutation_p.E1750K|PTPRB_uc001swc.3_Missense_Mutation_p.E2058K|PTPRB_uc001swa.3_Missense_Mutation_p.E1970K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1840	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ATGGTCCACTCAGGCAGGACG	0.507													19	48	---	---	---	---	PASS
NAV3	89795	broad.mit.edu	37	12	78400703	78400703	+	Nonsense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:78400703T>A	uc001syp.2	+	8	1558	c.1385T>A	c.(1384-1386)TTG>TAG	p.L462*	NAV3_uc001syo.2_Nonsense_Mutation_p.L462*	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	462						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AAAAAGTCTTTGCTACAGCCA	0.418										HNSCC(70;0.22)			29	73	---	---	---	---	PASS
IKBIP	121457	broad.mit.edu	37	12	99007382	99007382	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:99007382T>C	uc001tfv.2	-	3	1144	c.1034A>G	c.(1033-1035)CAC>CGC	p.H345R	IKBIP_uc001tfw.2_3'UTR	NM_201612	NP_963906	Q70UQ0	IKIP_HUMAN	IKK interacting protein isoform 2	345					induction of apoptosis|response to X-ray	endoplasmic reticulum membrane|integral to membrane	protein binding				0						ATCTGAAATGTGTGCTATTTC	0.274													17	50	---	---	---	---	PASS
NUP37	79023	broad.mit.edu	37	12	102505967	102505967	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:102505967C>A	uc001tjc.2	-	2	265	c.200G>T	c.(199-201)CGA>CTA	p.R67L	NUP37_uc009zub.1_Missense_Mutation_p.R67L	NM_024057	NP_076962	Q8NFH4	NUP37_HUMAN	nucleoporin 37kDa	67					carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			ovary(1)	1						GTGAAATGTTCGAAGTGTTTT	0.368													4	66	---	---	---	---	PASS
CORO1C	23603	broad.mit.edu	37	12	109042780	109042780	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:109042780C>A	uc001tnj.2	-	9	1114	c.1018G>T	c.(1018-1020)GAG>TAG	p.E340*	CORO1C_uc009zva.2_Nonsense_Mutation_p.E393*|CORO1C_uc010sxf.1_Nonsense_Mutation_p.E303*	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	340					actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						CACTTTCTCTCATGAAGTTTG	0.328													5	44	---	---	---	---	PASS
HNF1A	6927	broad.mit.edu	37	12	121434449	121434449	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr12:121434449A>T	uc001tzg.2	+	6	1236	c.1213A>T	c.(1213-1215)ATG>TTG	p.M405L	HNF1A_uc001tze.1_Missense_Mutation_p.M405L|HNF1A_uc001tzf.2_Missense_Mutation_p.M405L|HNF1A_uc010szn.1_Missense_Mutation_p.M405L	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	405					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GAACCTCATCATGGCCTCACT	0.637									Hepatic_Adenoma_Familial_Clustering_of				5	15	---	---	---	---	PASS
XPO4	64328	broad.mit.edu	37	13	21436984	21436984	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:21436984C>A	uc001unq.3	-	3	225	c.189G>T	c.(187-189)GTG>GTT	p.V63V	XPO4_uc010tcr.1_5'UTR	NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	63					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		GGACATAGTCCACTTTACTAG	0.348													7	170	---	---	---	---	PASS
PABPC3	5042	broad.mit.edu	37	13	25670378	25670378	+	Nonsense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:25670378C>G	uc001upy.2	+	1	103	c.42C>G	c.(40-42)TAC>TAG	p.Y14*		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	14	RRM 1.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		CCTCGCTCTACGTGGGGGACC	0.637													11	20	---	---	---	---	PASS
SHISA2	387914	broad.mit.edu	37	13	26620919	26620919	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:26620919C>A	uc001uqm.1	-	2	705	c.620G>T	c.(619-621)TGC>TTC	p.C207F		NM_001007538	NP_001007539	Q6UWI4	SHSA2_HUMAN	shisa homolog 2 precursor	207	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2						TTCCGGCAAGCAACAGTTGGT	0.602													7	33	---	---	---	---	PASS
FLT1	2321	broad.mit.edu	37	13	28919617	28919617	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:28919617G>T	uc001usb.3	-	16	2605	c.2320C>A	c.(2320-2322)CTC>ATC	p.L774I	FLT1_uc001usa.3_5'UTR	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	774	Helical; (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GTTAATAGGAGCCAGAAGAGA	0.413													8	18	---	---	---	---	PASS
FRY	10129	broad.mit.edu	37	13	32709039	32709039	+	Splice_Site	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:32709039A>T	uc001utx.2	+	9	1382	c.886_splice	c.e9-2	p.E296_splice	FRY_uc010tdw.1_Splice_Site	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog						regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TCTGCTTCCCAGGAATGTGCA	0.393													22	57	---	---	---	---	PASS
PDS5B	23047	broad.mit.edu	37	13	33344601	33344601	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:33344601G>T	uc010abf.2	+	32	4125	c.3967G>T	c.(3967-3969)GCA>TCA	p.A1323S	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	1323					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		TGGACCTCCAGCACCAGAGGA	0.453													11	55	---	---	---	---	PASS
LECT1	11061	broad.mit.edu	37	13	53307398	53307398	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:53307398C>A	uc001vhf.2	-	3	421	c.310G>T	c.(310-312)GGA>TGA	p.G104*	LECT1_uc001vhg.2_Nonsense_Mutation_p.G104*|LECT1_uc001vhh.2_Nonsense_Mutation_p.G131*	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	104	BRICHOS.				cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		GCTCCACTTCCCATTTTAAAG	0.388													6	93	---	---	---	---	PASS
KLHL1	57626	broad.mit.edu	37	13	70681347	70681347	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:70681347C>G	uc001vip.2	-	1	1279	c.485G>C	c.(484-486)GGA>GCA	p.G162A	KLHL1_uc010thm.1_Missense_Mutation_p.G162A|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	162					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GTGTCCACATCCTTCACCTGT	0.517													25	40	---	---	---	---	PASS
CLDN10	9071	broad.mit.edu	37	13	96086185	96086185	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:96086185G>A	uc001vmg.2	+	1	333	c.98G>A	c.(97-99)CGA>CAA	p.R33Q	CLDN10_uc010tii.1_Missense_Mutation_p.R33Q	NM_182848	NP_878268	P78369	CLD10_HUMAN	claudin 10 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.18)			GTGACCACGCGAGCCTCCTCG	0.562													8	29	---	---	---	---	PASS
RASA3	22821	broad.mit.edu	37	13	114781703	114781703	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:114781703C>T	uc001vui.2	-	13	1382	c.1251G>A	c.(1249-1251)TTG>TTA	p.L417L	RASA3_uc010tkk.1_Silent_p.L385L|RASA3_uc001vuj.2_Silent_p.L34L	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	417	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			CTCCGTCTTTCAACTTCACAG	0.517													4	15	---	---	---	---	PASS
ZNF828	283489	broad.mit.edu	37	13	115091231	115091231	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr13:115091231A>T	uc010ahb.2	+	3	2243	c.1914A>T	c.(1912-1914)AAA>AAT	p.K638N	ZNF828_uc001vuv.2_Missense_Mutation_p.K638N|ZNF828_uc010tko.1_Missense_Mutation_p.K638N	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	638	Mediates localization to the chromosome and the spindle and negatively regulates chromosome alignment.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AGTACATAAAAACAGATTTGG	0.393													10	73	---	---	---	---	PASS
OR11H12	440153	broad.mit.edu	37	14	19378014	19378014	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:19378014A>G	uc010tkp.1	+	1	421	c.421A>G	c.(421-423)ATC>GTC	p.I141V		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	141	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTACCTTGCTATCTGCCGTCC	0.453													11	148	---	---	---	---	PASS
MYH7	4625	broad.mit.edu	37	14	23884304	23884304	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:23884304C>T	uc001wjx.2	-	37	5565	c.5459G>A	c.(5458-5460)CGG>CAG	p.R1820Q		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1820	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTCCAGCTCCCGCACCCGCGC	0.627													10	81	---	---	---	---	PASS
NOVA1	4857	broad.mit.edu	37	14	26917955	26917955	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:26917955G>T	uc001wpy.2	-	5	1052	c.734C>A	c.(733-735)CCA>CAA	p.P245Q	NOVA1_uc001wpz.2_Missense_Mutation_p.P221Q|NOVA1_uc001wqa.2_Missense_Mutation_p.P123Q	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	248					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GCCACTTTGTGGATCCTCTTG	0.453													5	52	---	---	---	---	PASS
NID2	22795	broad.mit.edu	37	14	52520558	52520558	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:52520558C>G	uc001wzo.2	-	5	1402	c.1168G>C	c.(1168-1170)GAG>CAG	p.E390Q	NID2_uc010tqs.1_Missense_Mutation_p.E390Q|NID2_uc010tqt.1_Missense_Mutation_p.E390Q|NID2_uc001wzp.2_Missense_Mutation_p.E390Q	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	390						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					CTTCTGGTCTCTCTCTCATCC	0.547													14	31	---	---	---	---	PASS
SAMD4A	23034	broad.mit.edu	37	14	55231189	55231189	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:55231189G>T	uc001xbb.2	+	7	1525	c.1524G>T	c.(1522-1524)TTG>TTT	p.L508F	SAMD4A_uc001xbc.2_Missense_Mutation_p.L420F|SAMD4A_uc001xbg.2_Missense_Mutation_p.L100F	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	509					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						CACAGCTCTTGGTCTCCAGAC	0.388													6	169	---	---	---	---	PASS
SYNE2	23224	broad.mit.edu	37	14	64599130	64599130	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:64599130G>T	uc001xgm.2	+	77	14718	c.14488G>T	c.(14488-14490)GGT>TGT	p.G4830C	SYNE2_uc001xgl.2_Missense_Mutation_p.G4830C|SYNE2_uc010apy.2_Missense_Mutation_p.G1215C|SYNE2_uc010apz.1_Missense_Mutation_p.G722C	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4830	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ACGCCAATGTGGTATGAAGCT	0.403													6	77	---	---	---	---	PASS
ZFYVE26	23503	broad.mit.edu	37	14	68220848	68220848	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:68220848G>T	uc001xka.2	-	38	7207	c.7068C>A	c.(7066-7068)ACC>ACA	p.T2356T	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkb.2_Silent_p.T202T	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	2356					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		GAGGCAAAGTGGTGATTTGAG	0.488													8	185	---	---	---	---	PASS
PTPN21	11099	broad.mit.edu	37	14	88945368	88945368	+	Missense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:88945368T>A	uc001xwv.3	-	13	2738	c.2407A>T	c.(2407-2409)ACG>TCG	p.T803S	PTPN21_uc010twc.1_Missense_Mutation_p.T599S	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	803						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						CGGCCTGACGTGGTGAGGTCG	0.652													9	22	---	---	---	---	PASS
KIAA1409	57578	broad.mit.edu	37	14	94008943	94008943	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr14:94008943G>A	uc001ybv.1	+	11	1208	c.1125G>A	c.(1123-1125)CTG>CTA	p.L375L	KIAA1409_uc001ybs.1_Silent_p.L375L	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	552						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGGAAAAGCTGAAGCCTCAGT	0.498													20	61	---	---	---	---	PASS
MKRN3	7681	broad.mit.edu	37	15	23811260	23811260	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:23811260G>T	uc001ywh.3	+	1	807	c.331G>T	c.(331-333)GAG>TAG	p.E111*	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Nonsense_Mutation_p.E111*	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	111	C3H1-type 1.					ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GCAGTGCAAGGAGGGGGAGAA	0.597													31	46	---	---	---	---	PASS
TGM5	9333	broad.mit.edu	37	15	43527770	43527770	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:43527770C>A	uc001zrd.1	-	10	1619	c.1611G>T	c.(1609-1611)AAG>AAT	p.K537N	TGM5_uc001zrc.1_Missense_Mutation_p.K194N|TGM5_uc001zre.1_Missense_Mutation_p.K455N	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	537					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	CTTTGAGGTCCTTGAACTGGG	0.557													12	23	---	---	---	---	PASS
TP53BP1	7158	broad.mit.edu	37	15	43707872	43707872	+	Nonsense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:43707872G>C	uc001zrs.2	-	23	5142	c.4994C>G	c.(4993-4995)TCA>TGA	p.S1665*	TP53BP1_uc010udp.1_Nonsense_Mutation_p.S1665*|TP53BP1_uc001zrq.3_Nonsense_Mutation_p.S1670*|TP53BP1_uc001zrr.3_Nonsense_Mutation_p.S1670*|TP53BP1_uc010udq.1_Nonsense_Mutation_p.S1670*|TP53BP1_uc001zrp.2_Nonsense_Mutation_p.S82*	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1665					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TCTTTTGCCTGAGAGAACTCC	0.537								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					4	91	---	---	---	---	PASS
GLDN	342035	broad.mit.edu	37	15	51676070	51676070	+	Silent	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:51676070T>C	uc002aba.2	+	4	691	c.522T>C	c.(520-522)AAT>AAC	p.N174N	GLDN_uc010bez.1_Missense_Mutation_p.M157T|GLDN_uc002abb.2_Silent_p.N50N	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	174	Extracellular (Potential).|Collagen-like 1.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		AAGGAGCAAATGGAAAAAGAG	0.468													7	12	---	---	---	---	PASS
WDR72	256764	broad.mit.edu	37	15	53889379	53889379	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:53889379G>T	uc002acj.2	-	18	3087	c.3045C>A	c.(3043-3045)TCC>TCA	p.S1015S		NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	1015										lung(1)|skin(1)	2				all cancers(107;0.0511)		TCTCTGCCATGGACACTGGTT	0.448													7	153	---	---	---	---	PASS
LRRC49	54839	broad.mit.edu	37	15	71302258	71302258	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:71302258A>G	uc002asw.2	+	13	1767	c.1520A>G	c.(1519-1521)AAT>AGT	p.N507S	LRRC49_uc002asu.2_Missense_Mutation_p.N497S|LRRC49_uc002asx.2_Missense_Mutation_p.N463S|LRRC49_uc010ukf.1_Missense_Mutation_p.N512S|LRRC49_uc002asy.2_Missense_Mutation_p.N213S|LRRC49_uc002asz.2_Missense_Mutation_p.N479S	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	507						cytoplasm|microtubule				ovary(1)	1						CCAGTTGTCAATTTTACACTC	0.373													21	44	---	---	---	---	PASS
SGK269	79834	broad.mit.edu	37	15	77471444	77471444	+	Missense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:77471444T>A	uc002bcm.2	-	3	3133	c.2825A>T	c.(2824-2826)GAC>GTC	p.D942V	SGK269_uc002bcn.2_Missense_Mutation_p.D942V	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	942					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TTTCTCTTTGTCATCCTCCTC	0.522													11	35	---	---	---	---	PASS
AKAP13	11214	broad.mit.edu	37	15	86122678	86122678	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:86122678C>T	uc002blv.1	+	7	1549	c.1379C>T	c.(1378-1380)TCC>TTC	p.S460F	AKAP13_uc002blt.1_Missense_Mutation_p.S460F|AKAP13_uc002blu.1_Missense_Mutation_p.S460F	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	460					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GCCCAGTATTCCTCTGGAGGT	0.522													7	114	---	---	---	---	PASS
AKAP13	11214	broad.mit.edu	37	15	86124952	86124952	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:86124952C>T	uc002blv.1	+	7	3823	c.3653C>T	c.(3652-3654)GCC>GTC	p.A1218V	AKAP13_uc002blt.1_Missense_Mutation_p.A1218V|AKAP13_uc002blu.1_Missense_Mutation_p.A1218V|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1218					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GTCATGCGAGCCCCGCCTTCA	0.612													6	34	---	---	---	---	PASS
AKAP13	11214	broad.mit.edu	37	15	86125189	86125189	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:86125189C>T	uc002blv.1	+	7	4060	c.3890C>T	c.(3889-3891)ACA>ATA	p.T1297I	AKAP13_uc002blt.1_Missense_Mutation_p.T1297I|AKAP13_uc002blu.1_Missense_Mutation_p.T1297I|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1297					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						AGTGCTTTTACAGAAAAAGTG	0.552													14	84	---	---	---	---	PASS
C15orf51	196968	broad.mit.edu	37	15	100332419	100332419	+	RNA	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr15:100332419C>A	uc010urx.1	-	5		c.1773G>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TATGGACCTCCTGGAGGAGAA	0.557													22	81	---	---	---	---	PASS
RHOT2	89941	broad.mit.edu	37	16	723528	723528	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:723528G>T	uc002cip.2	+	19	1846	c.1779G>T	c.(1777-1779)GGG>GGT	p.G593G	RHOT2_uc002ciq.2_Silent_p.G486G|RHOT2_uc010bqy.2_Silent_p.G372G|RHBDL1_uc002cir.1_5'Flank|RHBDL1_uc010uun.1_5'Flank|RHBDL1_uc002cis.1_5'Flank	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	593	Miro 2.|Helical; Anchor for type IV membrane protein; (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				GGCTCCGGGGGCTGCTGGGGG	0.622													12	46	---	---	---	---	PASS
HCFC1R1	54985	broad.mit.edu	37	16	3073520	3073520	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:3073520C>A	uc002csx.1	-	3	240	c.107G>T	c.(106-108)CGA>CTA	p.R36L	HCFC1R1_uc002csy.1_Missense_Mutation_p.R36L|HCFC1R1_uc002csz.1_Intron|THOC6_uc002ctb.2_5'Flank|THOC6_uc002ctd.2_5'Flank|THOC6_uc002ctc.2_5'Flank|THOC6_uc002cta.2_5'Flank	NM_001002018	NP_001002018	Q9NWW0	HPIP_HUMAN	host cell factor C1 regulator 1 (XPO1 dependant)	36						cytoplasm|nucleus					0						CACAGCTCCTCGGAGAGGGGA	0.632													3	11	---	---	---	---	PASS
GLYR1	84656	broad.mit.edu	37	16	4871572	4871572	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:4871572C>T	uc002cxx.3	-	8	745	c.708G>A	c.(706-708)ACG>ACA	p.T236T	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Intron|GLYR1_uc002cya.2_Silent_p.T236T|GLYR1_uc010uxv.1_Silent_p.T155T	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	236					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						TCAACTTCTTCGTGATTGCCT	0.448													7	38	---	---	---	---	PASS
PALB2	79728	broad.mit.edu	37	16	23614791	23614791	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:23614791G>T	uc002dlx.1	-	13	3750	c.3550C>A	c.(3550-3552)CAC>AAC	p.H1184N		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	1184	Interaction with RAD51 and BRCA2.|WD 7.				double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		TATGAATAGTGGTATACAAAT	0.358			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of				5	47	---	---	---	---	PASS
TAOK2	9344	broad.mit.edu	37	16	29997772	29997772	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:29997772G>T	uc002dva.1	+	16	2962	c.2179G>T	c.(2179-2181)GAG>TAG	p.E727*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Nonsense_Mutation_p.E727*|TAOK2_uc002dvc.1_Nonsense_Mutation_p.E727*|TAOK2_uc010bzm.1_Nonsense_Mutation_p.E734*|TAOK2_uc002dvd.1_Nonsense_Mutation_p.E554*	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	727					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GCGTGAGCAAGAGTTGCGGCA	0.677													7	56	---	---	---	---	PASS
STX1B	112755	broad.mit.edu	37	16	31008036	31008036	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:31008036C>G	uc010cad.2	-	7	617	c.505G>C	c.(505-507)GAG>CAG	p.E169Q	STX1B_uc010vfd.1_Missense_Mutation_p.E169Q	NM_052874	NP_443106	P61266	STX1B_HUMAN	syntaxin 1B	169	Cytoplasmic (Potential).				intracellular protein transport|neurotransmitter transport|synaptic transmission	integral to plasma membrane	extracellular-glutamate-gated ion channel activity|SNAP receptor activity				0						TTCCCGCTCTCCAGCATGTCT	0.607													8	35	---	---	---	---	PASS
ZNF423	23090	broad.mit.edu	37	16	49671724	49671724	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:49671724G>T	uc002efs.2	-	5	1637	c.1339C>A	c.(1339-1341)CTG>ATG	p.L447M	ZNF423_uc010vgn.1_Missense_Mutation_p.L330M	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	447	C2H2-type 10.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				ATGGAGTCCAGGCAGATCTGA	0.562													5	55	---	---	---	---	PASS
CHD9	80205	broad.mit.edu	37	16	53272410	53272410	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:53272410G>T	uc002ehb.2	+	11	2953	c.2789G>T	c.(2788-2790)TGG>TTG	p.W930L	CHD9_uc002egy.2_Missense_Mutation_p.W930L|CHD9_uc002eha.1_Missense_Mutation_p.W930L|CHD9_uc002ehc.2_Missense_Mutation_p.W930L|CHD9_uc002ehf.2_Missense_Mutation_p.W44L|CHD9_uc002ehd.2_Missense_Mutation_p.W456L|CHD9_uc002ehe.1_Missense_Mutation_p.W44L	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	930	Helicase ATP-binding.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				TTTCGTACGTGGACTGATATT	0.403													6	141	---	---	---	---	PASS
SLC9A5	6553	broad.mit.edu	37	16	67286512	67286512	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:67286512G>A	uc002esm.2	+	2	318	c.255G>A	c.(253-255)CTG>CTA	p.L85L	SLC9A5_uc010cee.2_5'UTR|SLC9A5_uc010vji.1_5'UTR	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	85	Helical; (Potential).				regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		TGCTGGGCCTGGTGCTAGGGG	0.522													28	57	---	---	---	---	PASS
FAM65A	79567	broad.mit.edu	37	16	67575630	67575630	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:67575630C>A	uc010vjp.1	+	12	1181	c.1085C>A	c.(1084-1086)TCC>TAC	p.S362Y	FAM65A_uc010cei.1_Missense_Mutation_p.S184Y|FAM65A_uc002eth.2_Missense_Mutation_p.S342Y|FAM65A_uc010cej.2_Missense_Mutation_p.S345Y|FAM65A_uc002eti.1_Missense_Mutation_p.S305Y|FAM65A_uc010vjq.1_Missense_Mutation_p.S356Y|FAM65A_uc002etj.1_Missense_Mutation_p.S341Y|FAM65A_uc002etk.2_Missense_Mutation_p.S341Y	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	346						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		AAGCGCTTCTCCACCTATAGC	0.592													5	50	---	---	---	---	PASS
ADAT1	23536	broad.mit.edu	37	16	75637051	75637051	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:75637051C>A	uc002feo.1	-	10	1410	c.1308G>T	c.(1306-1308)GTG>GTT	p.V436V	ADAT1_uc002fep.1_Silent_p.V287V	NM_012091	NP_036223	Q9BUB4	ADAT1_HUMAN	adenosine deaminase, tRNA-specific 1	436	A to I editase.				tRNA processing		metal ion binding|RNA binding|tRNA-specific adenosine deaminase activity			ovary(1)|skin(1)	2						TGAAGAGTTCCACTTTGCTGA	0.413													8	212	---	---	---	---	PASS
DPEP1	1800	broad.mit.edu	37	16	89702987	89702987	+	Silent	SNP	C	T	T	rs150009384	byFrequency	TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr16:89702987C>T	uc010cin.2	+	5	620	c.417C>T	c.(415-417)GGC>GGT	p.G139G	DPEP1_uc002fnr.3_Silent_p.G139G|DPEP1_uc002fns.3_Silent_p.G139G	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	139					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	GCCTGATCGGCGTGGAGGGCG	0.657													6	11	---	---	---	---	PASS
SUPT6H	6830	broad.mit.edu	37	17	27026896	27026896	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:27026896C>A	uc002hby.2	+	33	4636	c.4546C>A	c.(4546-4548)CAG>AAG	p.Q1516K	SUPT6H_uc010crt.2_Missense_Mutation_p.Q1516K	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1516					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GGATCACTACCAGGATCCTGT	0.527													6	114	---	---	---	---	PASS
KRTAP1-3	81850	broad.mit.edu	37	17	39190915	39190915	+	Silent	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:39190915A>G	uc002hvv.2	-	1	193	c.159T>C	c.(157-159)AGT>AGC	p.S53S		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	63			Missing (in allele KAP1.9).	GFPSFSTSGTCSS -> DFLASQLVDLQL (in Ref. 1).		extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			TGCAGGTCCCACTAGTTGAGA	0.627													16	28	---	---	---	---	PASS
NFE2L1	4779	broad.mit.edu	37	17	46135698	46135698	+	Silent	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:46135698T>C	uc002imz.3	+	6	1665	c.1014T>C	c.(1012-1014)AGT>AGC	p.S338S	NFE2L1_uc002ina.3_Silent_p.S308S|NFE2L1_uc002inb.3_Silent_p.S308S|NFE2L1_uc010wle.1_Silent_p.S150S|NFE2L1_uc010wlf.1_Silent_p.S182S	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	338					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						TCCTGTACAGTGCCCCTCCTG	0.582													19	56	---	---	---	---	PASS
TTLL6	284076	broad.mit.edu	37	17	46847099	46847099	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:46847099T>C	uc010wlo.1	-	15	2436	c.2401A>G	c.(2401-2403)AAC>GAC	p.N801D	TTLL6_uc002iob.2_Missense_Mutation_p.N494D|TTLL6_uc010dbi.2_Intron|TTLL6_uc002ioc.2_Missense_Mutation_p.N554D|TTLL6_uc002iod.2_Intron	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	753						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						CGTGACAGGTTATTCATCCCC	0.338													13	52	---	---	---	---	PASS
NGFR	4804	broad.mit.edu	37	17	47583905	47583905	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:47583905C>T	uc002ioz.3	+	3	578	c.453C>T	c.(451-453)GAC>GAT	p.D151D		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	151	Extracellular (Potential).|TNFR-Cys 4.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					AGTGCCCCGACGGCACGTATT	0.711													10	17	---	---	---	---	PASS
MBTD1	54799	broad.mit.edu	37	17	49281158	49281158	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:49281158G>T	uc002itr.3	-	8	1077	c.733C>A	c.(733-735)CCT>ACT	p.P245T	MBTD1_uc002itp.3_Missense_Mutation_p.P81T|MBTD1_uc002itq.3_Missense_Mutation_p.P245T	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	245	MBT 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			TTACTTCTAGGAGGAACAAGA	0.348													6	138	---	---	---	---	PASS
BRIP1	83990	broad.mit.edu	37	17	59821886	59821886	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:59821886T>C	uc002izk.1	-	15	2305	c.2164A>G	c.(2164-2166)ACA>GCA	p.T722A	BRIP1_uc002izl.1_Missense_Mutation_p.T103A	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	722					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						ACAATGACTGTCTTCACCAAC	0.353			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				26	92	---	---	---	---	PASS
MARCH10	162333	broad.mit.edu	37	17	60813646	60813646	+	Missense_Mutation	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:60813646T>C	uc010ddr.2	-	6	1821	c.1583A>G	c.(1582-1584)CAT>CGT	p.H528R	MARCH10_uc002jag.3_Missense_Mutation_p.H528R|MARCH10_uc010dds.2_Missense_Mutation_p.H566R|MARCH10_uc002jah.2_Missense_Mutation_p.H527R|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	528							ligase activity|zinc ion binding				0						GAAATAATTATGGTTTTCGGC	0.453													14	57	---	---	---	---	PASS
Unknown	0	broad.mit.edu	37	17	78282825	78282825	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:78282825G>T	uc002jyf.2	+	14	2652	c.2509G>T	c.(2509-2511)GAG>TAG	p.E837*	uc002jyg.1_Nonsense_Mutation_p.E568*	NM_020954	NP_066005			hypothetical protein LOC57714																		CAGGATTCCCGAGGAGGCCTT	0.478													5	95	---	---	---	---	PASS
RNF213	57674	broad.mit.edu	37	17	78348267	78348267	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:78348267C>A	uc002jyh.1	+	25	7394	c.7171C>A	c.(7171-7173)CAG>AAG	p.Q2391K	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.Q773K	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GGGGCTGCGGCAGGACCACCC	0.552													7	24	---	---	---	---	PASS
RNF213	57674	broad.mit.edu	37	17	78355400	78355400	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:78355400G>A	uc002jyh.1	+	32	8293	c.8070G>A	c.(8068-8070)CAG>CAA	p.Q2690Q	uc002jyi.1_Intron|RNF213_uc010dhw.1_Silent_p.Q1072Q	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GCTTTCTGCAGCAGCACATCC	0.572													21	46	---	---	---	---	PASS
RAB12	201475	broad.mit.edu	37	18	8609907	8609907	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:8609907G>A	uc002knp.2	+	1	465	c.182G>A	c.(181-183)CGC>CAC	p.R61H	RAB12_uc002kno.1_Missense_Mutation_p.R157H	NM_001025300	NP_001020471	Q6IQ22	RAB12_HUMAN	RAB12, member RAS oncogene family	61					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding				0						CTGATGGAGCGCTTCACCGAC	0.706													4	10	---	---	---	---	PASS
ASXL3	80816	broad.mit.edu	37	18	31323263	31323263	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:31323263A>G	uc010dmg.1	+	12	3506	c.3451A>G	c.(3451-3453)AAA>GAA	p.K1151E	ASXL3_uc002kxq.2_Missense_Mutation_p.K858E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1151					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CCCTGAAACAAAAATGGAAGG	0.502													7	21	---	---	---	---	PASS
ASXL3	80816	broad.mit.edu	37	18	31325671	31325671	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:31325671G>T	uc010dmg.1	+	12	5914	c.5859G>T	c.(5857-5859)AAG>AAT	p.K1953N	ASXL3_uc002kxq.2_Missense_Mutation_p.K1660N	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1953					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CCTCTTCCAAGACCCCAGTGG	0.527													11	61	---	---	---	---	PASS
ASXL3	80816	broad.mit.edu	37	18	31325735	31325735	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:31325735G>C	uc010dmg.1	+	12	5978	c.5923G>C	c.(5923-5925)GTT>CTT	p.V1975L	ASXL3_uc002kxq.2_Missense_Mutation_p.V1682L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1975					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATTGGGAGAGGTTAGTCTTTC	0.507													16	89	---	---	---	---	PASS
KIAA1632	57724	broad.mit.edu	37	18	43469849	43469849	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:43469849C>A	uc002lbm.2	-	28	4966	c.4866G>T	c.(4864-4866)AAG>AAT	p.K1622N	KIAA1632_uc010xcq.1_Missense_Mutation_p.K176N|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.K497N	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1622	Potential.				autophagy						0						GCTTCACTTCCTTCCGTAAAA	0.398													7	69	---	---	---	---	PASS
WDR7	23335	broad.mit.edu	37	18	54424511	54424511	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:54424511C>G	uc002lgk.1	+	15	2898	c.2687C>G	c.(2686-2688)TCT>TGT	p.S896C	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.S896C	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	896										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TCTATCATTTCTTTGGCAAAT	0.443													22	44	---	---	---	---	PASS
CCBE1	147372	broad.mit.edu	37	18	57103145	57103145	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:57103145G>T	uc002lib.2	-	11	1286	c.1216C>A	c.(1216-1218)CCA>ACA	p.P406T	CCBE1_uc010dpq.2_Missense_Mutation_p.P135T|CCBE1_uc002lia.2_Missense_Mutation_p.P259T	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	406					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				ATGTGCTATGGGTAGAAGTCT	0.493													10	218	---	---	---	---	PASS
CDH19	28513	broad.mit.edu	37	18	64172361	64172361	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:64172361C>G	uc002lkc.1	-	12	2145	c.2007G>C	c.(2005-2007)AAG>AAC	p.K669N	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_3'UTR	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	669	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				TTTTCCGAGTCTTGCGTTCCC	0.463													11	93	---	---	---	---	PASS
CBLN2	147381	broad.mit.edu	37	18	70205487	70205487	+	Missense_Mutation	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr18:70205487A>G	uc002lku.2	-	4	834	c.599T>C	c.(598-600)CTC>CCC	p.L200P	CBLN2_uc002lkv.2_Missense_Mutation_p.L200P	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	200	C1q.					integral to membrane					0		Esophageal squamous(42;0.131)				CTCAAGTTTGAGATGCACTTT	0.527													14	50	---	---	---	---	PASS
ABCA7	10347	broad.mit.edu	37	19	1058728	1058728	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:1058728G>T	uc002lqw.3	+	38	5492	c.5261G>T	c.(5260-5262)CGA>CTA	p.R1754L	ABCA7_uc002lqy.2_Missense_Mutation_p.R207L|ABCA7_uc010dsc.2_RNA	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1754					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCAGCACCGAAGCCAACTC	0.587													4	47	---	---	---	---	PASS
XAB2	56949	broad.mit.edu	37	19	7688675	7688675	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:7688675G>A	uc002mgx.2	-	8	1087	c.1061C>T	c.(1060-1062)CCA>CTA	p.P354L		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	354					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						CACGTGGTGTGGGTTTTGGCG	0.667								Direct_reversal_of_damage|NER					4	13	---	---	---	---	PASS
FBN3	84467	broad.mit.edu	37	19	8201158	8201158	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:8201158C>A	uc002mjf.2	-	11	1402	c.1381G>T	c.(1381-1383)GGT>TGT	p.G461C		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	461	EGF-like 4; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACGCAGTCACCGTGGTGGCAG	0.667													8	12	---	---	---	---	PASS
MUC16	94025	broad.mit.edu	37	19	9059671	9059671	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:9059671G>T	uc002mkp.2	-	3	27979	c.27775C>A	c.(27775-27777)CCC>ACC	p.P9259T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9261	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTCCTGTGGGGTAGGTGATA	0.468													6	80	---	---	---	---	PASS
MUC16	94025	broad.mit.edu	37	19	9070727	9070727	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:9070727C>T	uc002mkp.2	-	3	16923	c.16719G>A	c.(16717-16719)GGG>GGA	p.G5573G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5575	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGATGTAGCCCCAGGAGTAG	0.512													13	156	---	---	---	---	PASS
USE1	55850	broad.mit.edu	37	19	17327016	17327016	+	Silent	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:17327016G>T	uc002nfo.2	+	4	330	c.270G>T	c.(268-270)CTG>CTT	p.L90L	USE1_uc002nfn.2_Silent_p.L90L|USE1_uc010eal.1_Silent_p.L90L	NM_018467	NP_060937	Q9NZ43	USE1_HUMAN	unconventional SNARE in the ER 1 homolog	90	Cytoplasmic (Potential).				lysosomal transport|protein catabolic process|protein transport|secretion by cell|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane	protein binding				0						ACCAGTTCCTGGCCCCTGGCC	0.617													11	24	---	---	---	---	PASS
USE1	55850	broad.mit.edu	37	19	17327017	17327017	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:17327017G>T	uc002nfo.2	+	4	331	c.271G>T	c.(271-273)GCC>TCC	p.A91S	USE1_uc002nfn.2_Missense_Mutation_p.A91S|USE1_uc010eal.1_Missense_Mutation_p.A91S	NM_018467	NP_060937	Q9NZ43	USE1_HUMAN	unconventional SNARE in the ER 1 homolog	91	Cytoplasmic (Potential).				lysosomal transport|protein catabolic process|protein transport|secretion by cell|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane	protein binding				0						CCAGTTCCTGGCCCCTGGCCG	0.617													12	24	---	---	---	---	PASS
ZNF99	7652	broad.mit.edu	37	19	22940797	22940797	+	Silent	SNP	T	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:22940797T>C	uc010xrh.1	-	5	1641	c.1641A>G	c.(1639-1641)AAA>AAG	p.K547K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTATCTCATGTTTTCTAAGGG	0.368													11	36	---	---	---	---	PASS
ZNF91	7644	broad.mit.edu	37	19	23544231	23544231	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:23544231G>C	uc002nre.2	-	4	1663	c.1550C>G	c.(1549-1551)CCC>CGC	p.P517R	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.P485R	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	517						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				AAATTTGTAGGGTTTCTCTCC	0.353													8	44	---	---	---	---	PASS
ZNF91	7644	broad.mit.edu	37	19	23578154	23578154	+	Missense_Mutation	SNP	C	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:23578154C>G	uc002nre.2	-	1	116	c.3G>C	c.(1-3)ATG>ATC	p.M1I	ZNF91_uc010xrj.1_Missense_Mutation_p.M1I	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGGTTCCTGGCATCTTAGCTG	0.612													15	63	---	---	---	---	PASS
FFAR3	2865	broad.mit.edu	37	19	35849930	35849930	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:35849930C>T	uc002nzd.2	+	2	213	c.138C>T	c.(136-138)CGC>CGT	p.R46R	FFAR3_uc010xsu.1_RNA	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	46	Cytoplasmic.					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			TGCAGCGCCGCCCGGTGGCCG	0.642													14	132	---	---	---	---	PASS
PSMC4	5704	broad.mit.edu	37	19	40478439	40478439	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:40478439C>T	uc002omq.2	+	3	336	c.299C>T	c.(298-300)ACA>ATA	p.T100I	PSMC4_uc002omr.2_Missense_Mutation_p.T69I	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	100					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GATCAGAATACAGCCATCGTG	0.488													7	22	---	---	---	---	PASS
LYPD4	147719	broad.mit.edu	37	19	42342205	42342205	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:42342205G>A	uc002orp.1	-	4	1326	c.342C>T	c.(340-342)CTC>CTT	p.L114L	LYPD4_uc002orq.1_Silent_p.L79L	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	114						anchored to membrane|plasma membrane				ovary(1)	1						GGTTGTTGCAGAGATAAGACC	0.552													17	62	---	---	---	---	PASS
CIC	23152	broad.mit.edu	37	19	42794659	42794659	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:42794659G>C	uc002otf.1	+	10	1779	c.1739G>C	c.(1738-1740)GGT>GCT	p.G580A		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	580	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GGGGCTGGGGGTCCAGCGACA	0.677			T	DUX4	soft tissue sarcoma								15	31	---	---	---	---	PASS
IGFL1	374918	broad.mit.edu	37	19	46733753	46733753	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:46733753C>A	uc002pee.2	+	3	325	c.302C>A	c.(301-303)TCG>TAG	p.S101*		NM_198541	NP_940943	Q6UW32	IGFL1_HUMAN	IGF-like family member 1 precursor	101						extracellular space	protein binding				0		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.00242)|all cancers(93;0.0132)|GBM - Glioblastoma multiforme(486;0.0294)|Epithelial(262;0.201)		GCCCGGACCTCGGATGACAGG	0.587													5	102	---	---	---	---	PASS
C5AR1	728	broad.mit.edu	37	19	47823500	47823500	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:47823500G>T	uc002pgj.1	+	2	515	c.466G>T	c.(466-468)GCC>TCC	p.A156S		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	156	Helical; Name=4; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		GGCCTGGATCGCCTGTGCCGT	0.607													10	45	---	---	---	---	PASS
CARD8	22900	broad.mit.edu	37	19	48737714	48737714	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:48737714G>A	uc002pie.3	-	3	335	c.22C>T	c.(22-24)CAT>TAT	p.H8Y	CARD8_uc002pii.3_Missense_Mutation_p.P99L|CARD8_uc010xzi.1_Missense_Mutation_p.H8Y|CARD8_uc010els.2_5'Flank|CARD8_uc010xzj.1_Missense_Mutation_p.P99L|CARD8_uc010xzk.1_Missense_Mutation_p.H32Y|CARD8_uc002pif.3_Missense_Mutation_p.H8Y|CARD8_uc002pig.3_5'UTR|CARD8_uc002pih.3_Missense_Mutation_p.P49L|CARD8_uc010xzl.1_Missense_Mutation_p.P49L|CARD8_uc010xzm.1_Missense_Mutation_p.P99L	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	8					negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		GAACAATAATGGCTCTGCCTC	0.458													17	57	---	---	---	---	PASS
SLC6A16	28968	broad.mit.edu	37	19	49793961	49793961	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:49793961C>A	uc002pmz.2	-	11	2076	c.1842G>T	c.(1840-1842)TGG>TGT	p.W614C	SLC6A16_uc002pna.2_Missense_Mutation_p.W614C	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	614	Helical; Name=11; (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		ACAGATGGGGCCACAGCCAAC	0.537													3	9	---	---	---	---	PASS
ZNF761	388561	broad.mit.edu	37	19	53958064	53958064	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:53958064G>T	uc010eqp.2	+	7	761	c.303G>T	c.(301-303)TGG>TGT	p.W101C	ZNF761_uc010ydy.1_Missense_Mutation_p.W47C|ZNF761_uc002qbt.1_Missense_Mutation_p.W47C	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	101					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		AATTTCAATGGCAAGAAGATG	0.363													23	57	---	---	---	---	PASS
NLRP12	91662	broad.mit.edu	37	19	54313983	54313983	+	Nonsense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:54313983C>T	uc002qch.3	-	3	1150	c.930G>A	c.(928-930)TGG>TGA	p.W310*	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Nonsense_Mutation_p.W310*|NLRP12_uc002qcj.3_Nonsense_Mutation_p.W310*|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Nonsense_Mutation_p.W310*	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	310	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		AGCAGAGGCACCAGGGTCCCT	0.572													10	25	---	---	---	---	PASS
ZNF471	57573	broad.mit.edu	37	19	57037235	57037235	+	Missense_Mutation	SNP	A	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:57037235A>T	uc002qnh.2	+	5	1932	c.1799A>T	c.(1798-1800)CAG>CTG	p.Q600L		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	600	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		AGGCCCTATCAGTGTTTTGAA	0.423													22	42	---	---	---	---	PASS
PEG3	5178	broad.mit.edu	37	19	57328739	57328739	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:57328739C>A	uc002qnu.2	-	7	1422	c.1071G>T	c.(1069-1071)AGG>AGT	p.R357S	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.R328S|PEG3_uc002qnv.2_Missense_Mutation_p.R357S|PEG3_uc002qnw.2_Missense_Mutation_p.R233S|PEG3_uc002qnx.2_Missense_Mutation_p.R231S|PEG3_uc010etr.2_Missense_Mutation_p.R357S	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	357					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCACTGACTCCCTCTTGTTCA	0.458													20	47	---	---	---	---	PASS
USP29	57663	broad.mit.edu	37	19	57641512	57641512	+	Missense_Mutation	SNP	A	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:57641512A>C	uc002qny.2	+	4	1825	c.1469A>C	c.(1468-1470)AAG>ACG	p.K490T		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	490					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAGATGTGTAAGCAGAAGAGT	0.393													18	110	---	---	---	---	PASS
ZIK1	284307	broad.mit.edu	37	19	58099930	58099930	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr19:58099930C>A	uc002qpg.2	+	3	193	c.96C>A	c.(94-96)ATC>ATA	p.I32I	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_5'UTR|ZIK1_uc002qpi.2_Silent_p.I19I|ZIK1_uc002qpj.2_Intron	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	32	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TTGAGGACATCGCCATTTACT	0.522													25	63	---	---	---	---	PASS
TRPC4AP	26133	broad.mit.edu	37	20	33623108	33623108	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr20:33623108G>T	uc002xbk.2	-	8	903	c.869C>A	c.(868-870)GCC>GAC	p.A290D	TRPC4AP_uc010zuq.1_5'UTR|TRPC4AP_uc002xbl.2_Missense_Mutation_p.A290D|TRPC4AP_uc010zur.1_Missense_Mutation_p.A251D|TRPC4AP_uc002xbm.1_Missense_Mutation_p.A290D	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	TRPC4-associated protein isoform a	290	Interaction with TNFRSF1A (By similarity).				protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00936)			GCTGAGAAGGGCCGCTGCCAG	0.483													13	22	---	---	---	---	PASS
PTPRT	11122	broad.mit.edu	37	20	40710638	40710638	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr20:40710638C>A	uc002xkg.2	-	30	4340	c.4156G>T	c.(4156-4158)GGA>TGA	p.G1386*	PTPRT_uc010ggj.2_Nonsense_Mutation_p.G1405*|PTPRT_uc010ggi.2_Nonsense_Mutation_p.G589*	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1386	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAGAAGGTTCCACTACGGCCT	0.478													5	54	---	---	---	---	PASS
PTPRT	11122	broad.mit.edu	37	20	40713348	40713348	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr20:40713348C>A	uc002xkg.2	-	29	4294	c.4110G>T	c.(4108-4110)AGG>AGT	p.R1370S	PTPRT_uc010ggj.2_Missense_Mutation_p.R1389S|PTPRT_uc010ggi.2_Missense_Mutation_p.R573S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1370	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TACGTCCCTCCCTCCCGTCAT	0.607													4	17	---	---	---	---	PASS
NPBWR2	2832	broad.mit.edu	37	20	62737703	62737703	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr20:62737703C>T	uc011abt.1	-	1	482	c.482G>A	c.(481-483)CGG>CAG	p.R161Q		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	161	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CTTCGCCCCCCGGTAGGTGCG	0.632													7	8	---	---	---	---	PASS
TPTE	7179	broad.mit.edu	37	21	10920107	10920107	+	Nonsense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr21:10920107G>A	uc002yip.1	-	19	1515	c.1147C>T	c.(1147-1149)CAG>TAG	p.Q383*	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Nonsense_Mutation_p.Q365*|TPTE_uc002yir.1_Nonsense_Mutation_p.Q345*|TPTE_uc010gkv.1_Nonsense_Mutation_p.Q245*	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	383	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTACTCCCTGAAATTTTTCG	0.378													7	85	---	---	---	---	PASS
BRWD1	54014	broad.mit.edu	37	21	40570785	40570785	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr21:40570785G>T	uc002yxk.1	-	40	5696	c.5557C>A	c.(5557-5559)CCT>ACT	p.P1853T	BRWD1_uc010goc.1_Missense_Mutation_p.P496T|BRWD1_uc002yxl.2_Missense_Mutation_p.P1853T	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1853					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				ATAGCAATAGGGTCACAGTTC	0.363													8	106	---	---	---	---	PASS
C21orf57	54059	broad.mit.edu	37	21	47707005	47707005	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr21:47707005C>A	uc002ziv.2	+	2	607	c.178C>A	c.(178-180)CCA>ACA	p.P60T	C21orf57_uc002zit.1_Missense_Mutation_p.P60T|C21orf57_uc002ziu.1_Missense_Mutation_p.P60T|C21orf57_uc002ziw.2_Intron|C21orf57_uc002zix.2_Missense_Mutation_p.P60T|C21orf57_uc010gqh.2_Intron|C21orf57_uc002ziy.2_Missense_Mutation_p.P60T|MCM3AP_uc002zir.1_5'Flank	NM_058181	NP_478061	P58557	YBEY_HUMAN	hypothetical protein LOC54059 isoform 1	60							metal ion binding|metalloendopeptidase activity				0	Breast(49;0.112)			Colorectal(79;0.236)		TAGAAATGTCCCAACCGATGT	0.363													5	46	---	---	---	---	PASS
VPREB1	7441	broad.mit.edu	37	22	22599440	22599440	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:22599440G>A	uc002zvx.1	+	2	155	c.129G>A	c.(127-129)CTG>CTA	p.L43L	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	43	Ig-like V-type.|Complementarity-determining-1.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		CCTGCACCCTGAGGAACGACC	0.592													11	89	---	---	---	---	PASS
SLC2A11	66035	broad.mit.edu	37	22	24210776	24210776	+	Nonsense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:24210776G>T	uc002zyn.3	+	3	328	c.229G>T	c.(229-231)GGA>TGA	p.G77*	SLC2A11_uc002zyl.1_Nonsense_Mutation_p.G84*|SLC2A11_uc002zym.3_Nonsense_Mutation_p.G84*|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Nonsense_Mutation_p.G84*|SLC2A11_uc011ajd.1_Nonsense_Mutation_p.G71*|SLC2A11_uc002zyp.3_Nonsense_Mutation_p.G80*	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	77	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity			ovary(1)	1						GTATCCCCTGGGAGGCCTCTT	0.567													5	35	---	---	---	---	PASS
C22orf28	51493	broad.mit.edu	37	22	32802670	32802670	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:32802670G>T	uc003amm.2	-	4	450	c.319C>A	c.(319-321)CCT>ACT	p.P107T	C22orf28_uc011ama.1_RNA	NM_014306	NP_055121	Q9Y3I0	RTCB_HUMAN	hypothetical protein LOC51493	107					cell-matrix adhesion|substrate adhesion-dependent cell spreading|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|tRNA-splicing ligase complex	ATP binding|metal ion binding|RNA ligase (ATP) activity|vinculin binding				0						ACTGCTTCAGGGTCATTCATA	0.343													7	137	---	---	---	---	PASS
RBM9	23543	broad.mit.edu	37	22	36177730	36177730	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:36177730C>A	uc003aon.3	-	4	638	c.526G>T	c.(526-528)GAG>TAG	p.E176*	RBM9_uc003aog.3_Nonsense_Mutation_p.E86*|RBM9_uc003aol.3_Nonsense_Mutation_p.E105*|RBM9_uc003aoj.3_Nonsense_Mutation_p.E105*|RBM9_uc003aok.3_Nonsense_Mutation_p.E106*|RBM9_uc003aoh.3_Nonsense_Mutation_p.E105*|RBM9_uc003aom.3_Nonsense_Mutation_p.E105*|RBM9_uc010gwu.2_Nonsense_Mutation_p.E85*|RBM9_uc003aoo.3_Nonsense_Mutation_p.E175*|RBM9_uc003aop.3_Nonsense_Mutation_p.E105*	NM_001082578	NP_001076047	O43251	RFOX2_HUMAN	RNA binding motif protein 9 isoform 5	115					estrogen receptor signaling pathway|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of cell proliferation|RNA splicing	cytoplasm|nucleus	nucleotide binding|RNA binding|transcription corepressor activity|transcription factor binding				0						GATTTACTCTCTGAATTTTCA	0.453													8	176	---	---	---	---	PASS
MICALL1	85377	broad.mit.edu	37	22	38333762	38333762	+	Missense_Mutation	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:38333762G>T	uc003aui.2	+	15	2517	c.2433G>T	c.(2431-2433)GAG>GAT	p.E811D		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	811	Potential.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					GGGAGGAAGAGGAAGACAAGA	0.338													8	198	---	---	---	---	PASS
DMC1	11144	broad.mit.edu	37	22	38934604	38934604	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:38934604C>A	uc003avz.1	-	10	775	c.600G>T	c.(598-600)ATG>ATT	p.M200I	DMC1_uc011anv.1_Missense_Mutation_p.M145I	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	200					reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					CAAGTAGCTCCATCTGATGTT	0.383								Homologous_recombination					8	188	---	---	---	---	PASS
MCHR1	2847	broad.mit.edu	37	22	41077580	41077580	+	Missense_Mutation	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:41077580C>T	uc003ayz.2	+	2	1185	c.917C>T	c.(916-918)TCC>TTC	p.S306F	MCHR1_uc003aza.2_Missense_Mutation_p.S195F|uc003azb.1_RNA	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	306	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						CGCATGACGTCCTCAGTGGCC	0.602													7	51	---	---	---	---	PASS
CRELD2	79174	broad.mit.edu	37	22	50318061	50318061	+	Nonsense_Mutation	SNP	G	T	T	rs113168785	byFrequency	TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:50318061G>T	uc003bja.2	+	8	961	c.826G>T	c.(826-828)GAG>TAG	p.E276*	CRELD2_uc010haj.2_Nonsense_Mutation_p.E276*|CRELD2_uc010hal.2_Nonsense_Mutation_p.E325*|CRELD2_uc010hak.2_Nonsense_Mutation_p.E248*|CRELD2_uc010ham.2_Intron	NM_024324	NP_077300	Q6UXH1	CREL2_HUMAN	cysteine-rich with EGF-like domains 2 isoform b	276	FU 2.					endoplasmic reticulum|extracellular region	calcium ion binding				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.198)|LUAD - Lung adenocarcinoma(64;0.247)		AAACTGTAAAGAGTGTATCTC	0.602													4	13	---	---	---	---	PASS
SELO	83642	broad.mit.edu	37	22	50649059	50649059	+	Splice_Site	SNP	G	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:50649059G>T	uc011arr.1	+	5	1129	c.1071_splice	c.e5-1	p.R357_splice	SELO_uc010hap.2_Splice_Site_p.R168_splice|SELO_uc003bjy.2_Splice_Site_p.R37_splice|SELO_uc003bjz.2_Splice_Site_p.R37_splice	NM_031454	NP_113642	Q9BVL4	SELO_HUMAN	selenoprotein O												0		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		CCGTGTGGCAGGTACGACCCC	0.672											OREG0026676	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	19	---	---	---	---	PASS
MAPK8IP2	23542	broad.mit.edu	37	22	51040245	51040245	+	Silent	SNP	A	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:51040245A>G	uc003bmx.2	+	2	210	c.93A>G	c.(91-93)GAA>GAG	p.E31E	MAPK8IP2_uc003bmy.2_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	31	Asp/Glu-rich (acidic).				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCCTGGAAGAATTTGACGACG	0.587													4	76	---	---	---	---	PASS
STS	412	broad.mit.edu	37	X	7268042	7268042	+	Missense_Mutation	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:7268042G>A	uc004cry.3	+	10	1737	c.1492G>A	c.(1492-1494)GAC>AAC	p.D498N		NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	498	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	CACCCATCACGACCCACCTTT	0.493									Ichthyosis				15	19	---	---	---	---	PASS
TLR7	51284	broad.mit.edu	37	X	12905841	12905841	+	Silent	SNP	G	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:12905841G>A	uc004cvc.2	+	3	2353	c.2214G>A	c.(2212-2214)CTG>CTA	p.L738L		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	738	LRR 25.|Extracellular (Potential).			L -> P (in Ref. 2; AAF78035).	cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	TCAGGAGTCTGACGAAGTATT	0.423													20	50	---	---	---	---	PASS
TXLNG	55787	broad.mit.edu	37	X	16846272	16846272	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:16846272C>A	uc004cxq.1	+	4	605	c.554C>A	c.(553-555)GCC>GAC	p.A185D	TXLNG_uc010ney.1_Missense_Mutation_p.A53D	NM_018360	NP_060830	Q9NUQ3	TXLNG_HUMAN	gamma-taxilin	185	Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane				lung(1)	1						AAGAAGCAAGCCCAGATTGTG	0.418													21	42	---	---	---	---	PASS
KLF8	11279	broad.mit.edu	37	X	56295866	56295866	+	Missense_Mutation	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:56295866G>C	uc004dur.2	+	4	1648	c.702G>C	c.(700-702)GAG>GAC	p.E234D	KLF8_uc010nkg.2_3'UTR|KLF8_uc011mop.1_Missense_Mutation_p.E234D|KLF8_uc010nkh.2_RNA	NM_007250	NP_009181	O95600	KLF8_HUMAN	Kruppel-like factor 8 isoform 1	234					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACAGTGAGGAGAGTACAATTG	0.433													8	15	---	---	---	---	PASS
ZXDA	7789	broad.mit.edu	37	X	57935671	57935671	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:57935671C>A	uc004dve.2	-	1	1397	c.1184G>T	c.(1183-1185)GGC>GTC	p.G395V		NM_007156	NP_009087	P98168	ZXDA_HUMAN	zinc finger, X-linked, duplicated A	395	C2H2-type 5.|Required for interaction with ZXDC.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CTTCTTGCAGCCAGAAAACGC	0.572													16	32	---	---	---	---	PASS
AWAT2	158835	broad.mit.edu	37	X	69262236	69262236	+	Silent	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:69262236C>A	uc004dxt.1	-	6	654	c.648G>T	c.(646-648)GGG>GGT	p.G216G		NM_001002254	NP_001002254	Q6E213	AWAT2_HUMAN	wax synthase 2	216						endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity				0						TTAGAGGCACCCTGCAGAGCA	0.542													4	27	---	---	---	---	PASS
ATRX	546	broad.mit.edu	37	X	76763844	76763844	+	Missense_Mutation	SNP	T	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:76763844T>A	uc004ecp.3	-	35	7696	c.7464A>T	c.(7462-7464)CAA>CAT	p.Q2488H	ATRX_uc004ecq.3_Missense_Mutation_p.Q2450H|ATRX_uc004eco.3_Missense_Mutation_p.Q2273H	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2488					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTGATTTCCCTTGGGAAGGTC	0.398			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						31	62	---	---	---	---	PASS
BRWD3	254065	broad.mit.edu	37	X	79936891	79936891	+	Missense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:79936891C>A	uc004edt.2	-	40	4866	c.4603G>T	c.(4603-4605)GAC>TAC	p.D1535Y	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.D1131Y|BRWD3_uc004edp.2_Missense_Mutation_p.D1364Y|BRWD3_uc004edq.2_Missense_Mutation_p.D1131Y|BRWD3_uc010nmj.1_Missense_Mutation_p.D1131Y|BRWD3_uc004edr.2_Missense_Mutation_p.D1205Y|BRWD3_uc004eds.2_Missense_Mutation_p.D1131Y|BRWD3_uc004edu.2_Missense_Mutation_p.D1205Y|BRWD3_uc004edv.2_Missense_Mutation_p.D1131Y|BRWD3_uc004edw.2_Missense_Mutation_p.D1131Y|BRWD3_uc004edx.2_Missense_Mutation_p.D1131Y|BRWD3_uc004edy.2_Missense_Mutation_p.D1131Y|BRWD3_uc004edz.2_Missense_Mutation_p.D1205Y|BRWD3_uc004eea.2_Missense_Mutation_p.D1205Y|BRWD3_uc004eeb.2_Missense_Mutation_p.D1131Y	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1535										ovary(4)	4						TTCCCTGGGTCATGGCTATTT	0.393													24	60	---	---	---	---	PASS
BEX1	55859	broad.mit.edu	37	X	102317936	102317936	+	Silent	SNP	C	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:102317936C>T	uc004ejt.1	-	3	507	c.267G>A	c.(265-267)GTG>GTA	p.V89V		NM_018476	NP_060946	Q9HBH7	BEX1_HUMAN	brain expressed, X-linked 1	89					cell differentiation|nervous system development	cytoplasm|nucleus				ovary(1)	1						TCAGCTGTCTCACCTCCTCCC	0.512													33	73	---	---	---	---	PASS
DCAF12L1	139170	broad.mit.edu	37	X	125686327	125686327	+	Nonsense_Mutation	SNP	C	A	A			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:125686327C>A	uc004eul.2	-	1	516	c.265G>T	c.(265-267)GAG>TAG	p.E89*		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	89										skin(3)|ovary(1)	4						AGTTGGCGCTCCGTCAGCAGC	0.657													11	15	---	---	---	---	PASS
MST4	51765	broad.mit.edu	37	X	131206864	131206864	+	Silent	SNP	G	C	C			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:131206864G>C	uc004ewk.1	+	10	1351	c.1050G>C	c.(1048-1050)CTG>CTC	p.L350L	MST4_uc004ewl.1_Silent_p.L273L|MST4_uc011mux.1_Silent_p.L372L|MST4_uc010nrj.1_Intron|MST4_uc004ewm.1_Silent_p.L288L	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	350					cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					TGCAAACCCTGAGTTGTTTGT	0.284													15	40	---	---	---	---	PASS
SLC6A8	6535	broad.mit.edu	37	X	152959701	152959701	+	Missense_Mutation	SNP	C	G	G	rs3179358		TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:152959701C>G	uc004fib.3	+	9	1649	c.1371C>G	c.(1369-1371)ATC>ATG	p.I457M	SLC6A8_uc004fic.3_Missense_Mutation_p.I447M|SLC6A8_uc011myx.1_Missense_Mutation_p.I342M|SLC6A8_uc010nuj.2_RNA	NM_005629	NP_005620	P48029	SC6A8_HUMAN	solute carrier family 6 member 8 isoform 1	457	Helical; (Potential).				creatine metabolic process|muscle contraction	integral to plasma membrane	creatine:sodium symporter activity|neurotransmitter:sodium symporter activity			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Creatine(DB00148)	GCTTTGTCATCGATCTCTCCA	0.617													39	59	---	---	---	---	PASS
Unknown	0	broad.mit.edu	37	5	8387811	8387811	+	RNA	DEL	C	-	-			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr5:8387811delC	uc003jeh.1	-	3		c.180delG								Homo sapiens cDNA clone IMAGE:5297486.																		CTGCCTCCCACCAGGATGTAG	0.478													5	5	---	---	---	---	
ZNF37B	100129482	broad.mit.edu	37	10	43012142	43012143	+	RNA	DEL	CT	-	-	rs56062397		TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr10:43012142_43012143delCT	uc001jab.3	-	5		c.7057_7058delAG			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						TCTCCTCCCCCTGTCCCTTCCA	0.361													4	2	---	---	---	---	
KRT16	3868	broad.mit.edu	37	17	39768931	39768932	+	Frame_Shift_Ins	INS	-	G	G			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:39768931_39768932insG	uc002hxg.3	-	1	148_149	c.9_10insC	c.(7-12)ACCTGCfs	p.T3fs	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	3_4	Head.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				TGGCGGCTGCAGGTGGTCATGG	0.653													4	2	---	---	---	---	
RNF126P1	376412	broad.mit.edu	37	17	55123867	55123868	+	RNA	INS	-	GACT	GACT	rs147162599	by1000genomes	TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr17:55123867_55123868insGACT	uc002iuw.2	+	1		c.1029_1030insGACT				NR_002818				Homo sapiens ring finger protein 126 pseudogene 1, mRNA (cDNA clone IMAGE:5166840), with apparent retained intron.												0						GAAACCGCGGGGACTTTCCCAA	0.688													5	3	---	---	---	---	
Unknown	0	broad.mit.edu	37	20	23169414	23169417	+	RNA	DEL	TGTG	-	-			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr20:23169414_23169417delTGTG	uc002wsw.1	+	1		c.817_820delTGTG								Homo sapiens cDNA FLJ34446 fis, clone HLUNG2002050.																		tgtgcatttatgtgtgtgtggtgt	0.000													2	4	---	---	---	---	
C20orf199	441951	broad.mit.edu	37	20	47897440	47897441	+	RNA	INS	-	T	T			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr20:47897440_47897441insT	uc002xuj.2	+	4		c.412_413insT			ZNFX1_uc002xui.2_5'Flank|C20orf199_uc002xul.3_RNA|C20orf199_uc002xun.3_Intron|C20orf199_uc002xum.3_Intron|C20orf199_uc002xuo.2_Intron	NR_003605				Homo sapiens cDNA FLJ42181 fis, clone THYMU2031368.												0						CTTTCTATAGGTTGGGAGCCAC	0.436													4	4	---	---	---	---	
PPM1F	9647	broad.mit.edu	37	22	22288587	22288587	+	Frame_Shift_Del	DEL	G	-	-			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chr22:22288587delG	uc002zvp.1	-	4	481	c.367delC	c.(367-369)CAAfs	p.Q123fs	PPM1F_uc011aik.1_Frame_Shift_Del_p.Q19fs|PPM1F_uc002zvq.2_Frame_Shift_Del_p.Q123fs	NM_014634	NP_055449	P49593	PPM1F_HUMAN	protein phosphatase 1F	123					apoptosis|protein dephosphorylation	protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(2)|large_intestine(1)|breast(1)|kidney(1)	5	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.155)		GCCAGGCTTTGGGCATCCAGC	0.627													4	8	---	---	---	---	
LOC92249	92249	broad.mit.edu	37	X	62648043	62648043	+	RNA	DEL	A	-	-			TCGA-46-3765-01A-01D-0983-08	TCGA-46-3765-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c4bb09f-46c8-4a42-bf4f-8bad5316603d	901a8f87-7ff9-4ae7-add8-d20380fc31fa	g.chrX:62648043delA	uc004dvg.2	-	4		c.1282delT			LOC92249_uc004dvh.2_RNA|LOC92249_uc004dvi.2_Intron	NR_015353				Homo sapiens cDNA FLJ10894 fis, clone NT2RP4002888, highly similar to Homo sapiens mRNA; cDNA DKFZp434F172.												0						ATGATTTTGTAATTAGGGTGT	0.498													4	2	---	---	---	---	
