Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2ML1	144568	broad.mit.edu	37	12	8976459	8976459	+	Silent	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107558164	107558164	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1046335	1046335	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20778656	20778656	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48231747	48231747	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183696103	183696103	+	Intron	DEL	T	-	-	rs67116575		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6	368	broad.mit.edu	37	16	16276105	16276105	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22012531	22012531	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89034842	89034842	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER1	125981	broad.mit.edu	37	19	6306640	6306640	+	3'UTR	SNP	C	T	T	rs113618237		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80667542	80667542	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131325010	131325010	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20552291	20552291	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT2	140625	broad.mit.edu	37	1	2939237	2939237	+	Silent	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42847339	42847339	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70712902	70712902	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21	8747	broad.mit.edu	37	14	70925692	70925692	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87780637	87780637	+	Splice_Site	SNP	T	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106321768	106321768	+	RNA	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107159960	107159960	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178567148	178567148	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49171021	49171021	+	Intron	DEL	G	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH7	131	broad.mit.edu	37	4	100340244	100340244	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148059835	148059835	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87217502	87217502	+	Splice_Site	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK2	204	broad.mit.edu	37	1	33478636	33478636	+	3'UTR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134250071	134250071	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58254091	58254091	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG12	79087	broad.mit.edu	37	22	50304035	50304035	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73716671	73716671	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41556937	41556938	+	Intron	INS	-	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD49	54851	broad.mit.edu	37	11	94230120	94230120	+	Intron	DEL	A	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36478826	36478826	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242149087	242149087	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA9	8416	broad.mit.edu	37	1	150967858	150967858	+	3'UTR	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77590184	77590184	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24908654	24908654	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128851280	128851280	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC2	27106	broad.mit.edu	37	19	18121164	18121164	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPG	374569	broad.mit.edu	37	14	104559703	104559703	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176845616	176845616	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116943326	116943326	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50264909	50264909	+	Silent	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRIP	84126	broad.mit.edu	37	3	48501913	48501913	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038591	11038591	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143570684	143570684	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL7B	9275	broad.mit.edu	37	7	72952325	72952325	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN1	274	broad.mit.edu	37	2	127826709	127826709	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLVRA	644	broad.mit.edu	37	7	43807071	43807071	+	Intron	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34118587	34118587	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLA2	552900	broad.mit.edu	37	16	30034596	30034596	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93683973	93683973	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL2	56244	broad.mit.edu	37	6	32370728	32370728	+	Silent	SNP	C	A	A	rs79379254		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf18	54906	broad.mit.edu	37	10	5777379	5777379	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf53	282966	broad.mit.edu	37	10	50916423	50916423	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf34	79866	broad.mit.edu	37	13	73317630	73317630	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45697050	45697050	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf28	122525	broad.mit.edu	37	14	45373686	45373686	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76452301	76452301	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921511	24921511	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf74	201243	broad.mit.edu	37	17	7330250	7330250	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf85	55421	broad.mit.edu	37	17	3721736	3721736	+	Silent	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30447612	30447612	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf95	375057	broad.mit.edu	37	1	226784558	226784558	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf81	391267	broad.mit.edu	37	21	15326350	15326350	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf58	205428	broad.mit.edu	37	3	143704330	143704330	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81309662	81309662	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf51	222950	broad.mit.edu	37	7	100086913	100086913	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf72	203228	broad.mit.edu	37	9	27561628	27561628	+	Missense_Mutation	SNP	T	A	A	rs17769294	byFrequency;by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181745281	181745281	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181765801	181765801	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81667564	81667564	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93108491	93108491	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230895163	230895163	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC1	55259	broad.mit.edu	37	12	25272362	25272362	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122002643	122002643	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2P1	440278	broad.mit.edu	37	15	44037109	44037109	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92074715	92074715	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC106	29903	broad.mit.edu	37	19	56160839	56160839	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC111	201973	broad.mit.edu	37	4	185599618	185599618	+	Intron	SNP	T	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92979331	92979331	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144NL	339184	broad.mit.edu	37	17	20769829	20769829	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74559018	74559018	+	Splice_Site	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC48	79825	broad.mit.edu	37	3	128757593	128757593	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88B	283234	broad.mit.edu	37	11	64121092	64121092	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072423	17072423	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158226831	158226831	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61761098	61761098	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34854501	34854501	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF5	60680	broad.mit.edu	37	19	3281249	3281249	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48685348	48685348	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203194756	203194756	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA1	1134	broad.mit.edu	37	2	175624091	175624091	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP2	23122	broad.mit.edu	37	3	33586292	33586292	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19226636	19226636	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146817993	146817993	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125204548	125204548	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103352528	103352528	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46888135	46888135	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7477083	7477083	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7477086	7477086	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110827789	110827789	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA2	1358	broad.mit.edu	37	7	129909536	129909536	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131895293	131895293	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211459298	211459298	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1B	1375	broad.mit.edu	37	22	51012810	51012810	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390454	197390454	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17257775	17257775	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC1	23373	broad.mit.edu	37	19	18888001	18888001	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1413052	1413052	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2944669	2944669	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3265422	3265422	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34286094	34286094	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK2A1	1457	broad.mit.edu	37	20	480448	480448	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80808957	80808957	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36405996	36405996	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17168813	17168813	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC27	10283	broad.mit.edu	37	5	64081315	64081315	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35993959	35993959	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22989934	22989934	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51507444	51507444	+	Intron	DEL	G	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52781004	52781004	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72440283	72440283	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85950221	85950221	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299021	125299021	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299047	125299047	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885425	88885425	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50120969	50120969	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX38	9785	broad.mit.edu	37	16	72133039	72133039	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX58	79132	broad.mit.edu	37	17	40257261	40257261	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11593391	11593391	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186302410	186302410	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94342195	94342195	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOLPP1	57171	broad.mit.edu	37	9	131847610	131847610	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63976122	63976122	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28605664	28605664	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCR9	257203	broad.mit.edu	37	21	38593865	38593865	+	RNA	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103029646	103029646	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A2	1917	broad.mit.edu	37	20	62126148	62126148	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55249071	55249071	+	Missense_Mutation	SNP	C	T	T	rs121434569		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141595310	141595310	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3M	10480	broad.mit.edu	37	11	32611264	32611264	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL1	64834	broad.mit.edu	37	1	43829566	43829566	+	3'UTR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79357333	79357333	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML3	256364	broad.mit.edu	37	11	62373360	62373360	+	Silent	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14857057	14857057	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66286339	66286339	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96706352	96706352	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23702439	23702439	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETHE1	23474	broad.mit.edu	37	19	44012091	44012091	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242052698	242052698	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL3	2137	broad.mit.edu	37	8	28600642	28600642	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45607270	45607270	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2R	2149	broad.mit.edu	37	5	76028404	76028404	+	Silent	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM105B	90268	broad.mit.edu	37	5	14693081	14693081	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14816188	14816188	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131519874	131519874	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149B1	317662	broad.mit.edu	37	10	74960462	74960462	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCG	2189	broad.mit.edu	37	9	35077150	35077150	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127670326	127670326	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55396961	55396961	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137772785	137772785	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157497764	157497765	+	Intron	INS	-	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FES	2242	broad.mit.edu	37	15	91434895	91434895	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32735088	32735088	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102375188	102375188	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72744332	72744332	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240371509	240371509	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171252228	171252228	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	171944780	171944780	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNIP1	96459	broad.mit.edu	37	5	131008460	131008460	+	Silent	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114299555	114299555	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27128544	27128544	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27765182	27765182	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAN	8139	broad.mit.edu	37	16	81410934	81410934	+	Splice_Site	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42719627	42719627	+	3'UTR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150164352	150164352	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102979534	102979534	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183942605	183942605	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58477937	58477937	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31311771	31311771	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP4	23560	broad.mit.edu	37	10	1034568	1034568	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108635384	108635384	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMK	3003	broad.mit.edu	37	5	54320167	54320167	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS3	3038	broad.mit.edu	37	16	69148656	69148656	+	Silent	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS5	23354	broad.mit.edu	37	19	36113676	36113676	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28459224	28459224	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149785259	149785259	+	5'Flank	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71055341	71055341	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQB2	3120	broad.mit.edu	37	6	32726670	32726670	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29974550	29974550	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26860631	26860631	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256504	63256504	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113860141	113860141	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICA1L	130026	broad.mit.edu	37	2	203686132	203686132	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD1	3475	broad.mit.edu	37	7	112115600	112115600	+	3'UTR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47123148	47123148	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F10	84639	broad.mit.edu	37	2	113832689	113832689	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RN	3557	broad.mit.edu	37	2	113887244	113887244	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL3	3640	broad.mit.edu	37	19	17927620	17927620	+	3'UTR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL6	11172	broad.mit.edu	37	9	5185531	5185531	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7132156	7132156	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95871887	95871887	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201844234	201844234	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2629458	2629458	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISX	91464	broad.mit.edu	37	22	35478330	35478330	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15646154	15646154	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPK1	3705	broad.mit.edu	37	14	93482917	93482917	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147024598	147024598	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033103	30033104	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73480430	73480430	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119915822	119915822	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211276960	211276960	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ4	3761	broad.mit.edu	37	22	38822911	38822911	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196311175	196311175	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1045	23349	broad.mit.edu	37	9	34977191	34977191	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123130528	123130528	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17849677	17849677	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4910914	4910914	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF7	8609	broad.mit.edu	37	2	207988370	207988370	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52913032	52913032	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53215788	53215788	+	Silent	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-2	386679	broad.mit.edu	37	21	45970557	45970557	+	3'UTR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-4	386672	broad.mit.edu	37	21	45993646	45993646	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651199	1651228	+	In_Frame_Del	DEL	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	-	-	rs144216147	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154181956	154181956	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30863299	30863299	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136566318	136566318	+	Missense_Mutation	SNP	G	C	C	rs148317168		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75596528	75596528	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55146353	55146353	+	Intron	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPF	8513	broad.mit.edu	37	10	90429769	90429770	+	Intron	DNP	GG	TT	TT			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75116910	75116910	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197707307	197707307	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100125556	100125556	broad.mit.edu	37	3	125639774	125639774	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC388796	388796	broad.mit.edu	37	20	37055810	37055810	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550643	550643	broad.mit.edu	37	X	56763903	56763903	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644165	644165	broad.mit.edu	37	22	25045888	25045888	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL2	4017	broad.mit.edu	37	8	23190903	23190903	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161071502	161071502	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133811995	133811995	+	5'Flank	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141751656	141751656	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44204416	44204416	+	Splice_Site	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC43	254050	broad.mit.edu	37	12	122669057	122669057	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101601410	101601410	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40653253	40653253	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77746912	77746912	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34706112	34706112	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56911834	56911834	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA3	4102	broad.mit.edu	37	X	151935379	151935379	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65272262	65272262	+	RNA	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498192	66498192	+	RNA	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L2	23101	broad.mit.edu	37	3	182897375	182897375	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127325430	127325430	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151127077	151127077	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116413011	116413011	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL7A	25840	broad.mit.edu	37	12	51319018	51319018	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD4	148808	broad.mit.edu	37	1	205549685	205549685	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42042148	42042148	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222814760	222814760	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301821	18301821	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR758	768212	broad.mit.edu	37	14	101492227	101492227	+	5'Flank	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKKS	8195	broad.mit.edu	37	20	10393021	10393021	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLX	6945	broad.mit.edu	37	17	40720536	40720536	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD	23531	broad.mit.edu	37	17	53471924	53471924	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT1	116255	broad.mit.edu	37	2	223559263	223559263	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62937047	62937047	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSPD3	64598	broad.mit.edu	37	7	100212862	100212862	+	3'UTR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDU1	9526	broad.mit.edu	37	17	7489140	7489140	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRM1	79922	broad.mit.edu	37	17	34964761	34964761	+	Silent	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL45	84311	broad.mit.edu	37	17	36462436	36462436	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD1	51001	broad.mit.edu	37	8	97270732	97270732	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD2	10797	broad.mit.edu	37	2	74438449	74438449	+	Intron	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9005053	9005053	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9076674	9076674	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9077673	9077673	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9083941	9083941	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100675478	100675478	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100677522	100677522	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MX2	4600	broad.mit.edu	37	21	42751929	42751929	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD1	4084	broad.mit.edu	37	2	70164318	70164318	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10355258	10355258	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34883509	34883509	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST3	7994	broad.mit.edu	37	8	41791382	41791382	+	Silent	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2L2	10443	broad.mit.edu	37	13	33092138	33092138	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101720991	101720991	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARFL	64428	broad.mit.edu	37	16	781625	781625	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19890506	19890506	+	Silent	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152548754	152548754	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27157393	27157393	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAT5	10725	broad.mit.edu	37	16	69726307	69726307	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233785096	233785096	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC3	387921	broad.mit.edu	37	13	39618386	39618386	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC3	387921	broad.mit.edu	37	13	39618392	39618392	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51288551	51288551	+	Intron	SNP	G	A	A	rs116619609	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7059986	7059986	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56363727	56363727	+	Splice_Site	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56363731	56363731	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89088203	89088203	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP1	4867	broad.mit.edu	37	2	110962359	110962359	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115364710	115364710	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115375460	115375460	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50148973	50148973	+	3'UTR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156849038	156849038	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTS	4922	broad.mit.edu	37	12	86268247	86268247	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228565299	228565299	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H1	26539	broad.mit.edu	37	19	15918047	15918047	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D2	4991	broad.mit.edu	37	17	2996310	2996310	+	5'Flank	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A5	393046	broad.mit.edu	37	7	143748258	143748258	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D6	219983	broad.mit.edu	37	11	59225059	59225059	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20443788	20443788	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20296431	20296431	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413749	22413749	+	Silent	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B3	441608	broad.mit.edu	37	11	58170034	58170034	+	Silent	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55607017	55607017	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148715893	148715893	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC5L	5001	broad.mit.edu	37	7	103844634	103844634	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131528655	131528655	+	3'UTR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP12	64761	broad.mit.edu	37	7	139746679	139746679	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVG	64098	broad.mit.edu	37	22	44579292	44579292	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140182645	140182645	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503215	140503215	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140711965	140711965	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140778496	140778496	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233344406	233344406	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65387782	65387782	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142548567	142548567	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66620999	66620999	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156873562	156873562	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR1	221692	broad.mit.edu	37	6	13283719	13283719	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27238324	27238324	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28761084	28761084	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204237400	204237400	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118354442	118354442	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLM	27434	broad.mit.edu	37	7	44116039	44116039	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122334600	122334600	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18748374	18748374	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIC	5480	broad.mit.edu	37	5	122359468	122359468	+	3'UTR	DEL	A	-	-	rs71758463		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIP5K2	23262	broad.mit.edu	37	5	102522089	102522089	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151372540	151372540	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64785039	64785040	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93624636	93624636	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233410	43233410	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGDR	5729	broad.mit.edu	37	14	52735015	52735015	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH	5741	broad.mit.edu	37	11	13514260	13514260	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48146645	48146645	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121674301	121674301	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121674322	121674322	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL4	81607	broad.mit.edu	37	1	161049685	161049685	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QTRTD1	79691	broad.mit.edu	37	3	113795815	113795815	+	Intron	SNP	T	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG2	5897	broad.mit.edu	37	11	36614627	36614627	+	Missense_Mutation	SNP	G	T	T	rs150349031	byFrequency	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARG	5916	broad.mit.edu	37	12	53607014	53607014	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF5	83593	broad.mit.edu	37	1	206702584	206702584	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47034492	47034492	+	Splice_Site	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103159823	103159823	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103205942	103205942	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103294513	103294513	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85571154	85571154	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240933903	240933903	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63149682	63149682	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDL3	162494	broad.mit.edu	37	17	30611731	30611731	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90026277	90026277	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43438829	43438829	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN3	79890	broad.mit.edu	37	14	93107608	93107608	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40701712	40701712	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30343134	30343134	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44027602	44027602	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79639080	79639080	+	5'UTR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN2	6253	broad.mit.edu	37	19	45992753	45992753	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC3B	154661	broad.mit.edu	37	7	87436744	87436744	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39015859	39015859	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237516168	237516168	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237813354	237813354	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237982266	237982266	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD1	23256	broad.mit.edu	37	14	31152312	31152312	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB2A2	4250	broad.mit.edu	37	11	62037700	62037700	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1B	6338	broad.mit.edu	37	16	23382995	23382995	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177911130	177911130	+	Missense_Mutation	SNP	C	T	T	rs139593986	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48023097	48023097	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101047372	101047372	+	Silent	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61390734	61390734	+	3'UTR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57381746	57381746	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF1	57630	broad.mit.edu	37	4	170017740	170017740	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	51994930	51994930	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52115767	52115767	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51628373	51628373	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164772952	164772952	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25811563	25811563	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25921560	25921560	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A2	10560	broad.mit.edu	37	1	169437326	169437326	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A13	9390	broad.mit.edu	37	3	38315685	38315685	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A4	6583	broad.mit.edu	37	5	131663013	131663013	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A11	8402	broad.mit.edu	37	17	4841288	4841288	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A5	64924	broad.mit.edu	37	5	68411719	68411719	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A2	57153	broad.mit.edu	37	19	10742493	10742494	+	Intron	DNP	GG	TT	TT			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33951506	33951506	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33984697	33984697	+	5'UTR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A5	6528	broad.mit.edu	37	19	17994525	17994525	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85286003	85286003	+	5'UTR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55731794	55731794	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4A1	28231	broad.mit.edu	37	20	61296511	61296511	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98797513	98797513	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25328007	25328007	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPD3	6634	broad.mit.edu	37	22	24964111	24964111	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23818455	23818455	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA1	81833	broad.mit.edu	37	6	88773957	88773957	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142596610	142596610	+	3'UTR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2A	6700	broad.mit.edu	37	1	153028924	153028924	+	3'UTR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158605958	158605958	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR3	6753	broad.mit.edu	37	22	37602771	37602771	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134916565	134916565	+	5'Flank	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1P1	441394	broad.mit.edu	37	9	33220896	33220896	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7335179	7335180	+	Intron	DNP	CC	AA	AA			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB1	10454	broad.mit.edu	37	22	39772214	39772214	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60575636	60575636	+	Silent	SNP	C	A	A	rs149271691	byFrequency	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160006850	160006850	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK3	51347	broad.mit.edu	37	12	118650764	118650764	+	Missense_Mutation	SNP	C	A	A	rs147202627	byFrequency;by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1X	6907	broad.mit.edu	37	X	9661112	9661112	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL2	140597	broad.mit.edu	37	X	101382384	101382384	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1	10915	broad.mit.edu	37	5	145838957	145838957	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114925165	114925165	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10	6953	broad.mit.edu	37	6	167791599	167791599	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65274940	65274940	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56700198	56700198	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30703484	30703484	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92200205	92200205	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM1	7051	broad.mit.edu	37	14	24727669	24727669	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133923494	133923494	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43801837	43801837	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR9	54106	broad.mit.edu	37	3	52257313	52257313	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF4	7104	broad.mit.edu	37	3	149205327	149205327	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	159032142	159032142	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15426913	15426913	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM9	252839	broad.mit.edu	37	1	201120964	201120964	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIGD2	126259	broad.mit.edu	37	19	4298087	4298087	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19713778	19713778	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195591098	195591098	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93576936	93576936	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1957414	1957414	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP2	163590	broad.mit.edu	37	1	179820234	179820234	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42214379	42214379	+	Intron	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM11	81559	broad.mit.edu	37	1	228584918	228584918	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM27	5987	broad.mit.edu	37	6	28872311	28872311	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM5	85363	broad.mit.edu	37	11	5700213	5700213	+	Intron	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM65	201292	broad.mit.edu	37	17	73887248	73887248	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM67	440730	broad.mit.edu	37	1	231349585	231349585	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	900692	900692	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73255626	73255626	+	Intron	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234878660	234878660	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV4	59341	broad.mit.edu	37	12	110238349	110238349	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98519233	98519233	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSG101	7251	broad.mit.edu	37	11	18503191	18503192	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL2	64061	broad.mit.edu	37	X	53114870	53114870	+	Silent	SNP	A	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39172086	39172086	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC30B	150737	broad.mit.edu	37	2	178417000	178417000	+	Silent	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179650354	179650354	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR7	55148	broad.mit.edu	37	14	93686679	93686679	+	Nonsense_Mutation	SNP	C	T	T	rs147191980		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2B	137886	broad.mit.edu	37	8	59337808	59337808	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96515938	96515938	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234630445	234630445	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17760420	17760420	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13D	201294	broad.mit.edu	37	17	73836332	73836332	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73056384	73056384	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96106043	96106043	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3B	65109	broad.mit.edu	37	X	118969116	118969116	+	Intron	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43917045	43917045	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17527437	17527437	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17552759	17552759	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216051157	216051157	+	Missense_Mutation	SNP	C	A	A	rs12118814	byFrequency;by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216497577	216497577	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111421820	111421820	+	IGR	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22514791	22514791	+	IGR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60897774	60897774	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92813558	92813558	+	IGR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122489956	122489956	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18993560	18993560	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27912518	27912518	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086673	55086673	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234579	55234579	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6079406	6079406	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89502134	89502134	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34317805	34317805	+	IGR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80423119	80423119	+	IGR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806579	19806579	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	24218762	24218762	+	IGR	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49841130	49841130	+	IGR	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57445835	57445835	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	63589783	63589783	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71326061	71326061	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82382815	82382815	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22780855	22780855	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	59693652	59693652	+	IGR	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	66108938	66108938	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33390552	33390552	+	IGR	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33661284	33661284	+	IGR	SNP	C	G	G	rs149986715	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51098489	51098489	+	IGR	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	19400809	19400809	+	IGR	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14631968	14631968	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22793149	22793149	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149261513	149261513	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245392	166245392	+	IGR	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	18839587	18839587	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227681588	227681588	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066553	249066553	+	IGR	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	2056376	2056376	+	IGR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15199793	15199793	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15383889	15383889	+	IGR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21022099	21022099	+	IGR	DEL	C	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	23802412	23802412	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106831675	106831675	+	IGR	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	115017812	115017812	+	IGR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132369029	132369029	+	IGR	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189093088	189093088	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190782013	190782013	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58479309	58479309	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	64603284	64603284	+	IGR	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800151	91800151	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175695431	175695431	+	IGR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35257792	35257792	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190394352	190394352	+	IGR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102901104	102901104	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50880832	50880832	+	IGR	SNP	C	A	A	rs115075934	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143839677	143839677	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145280645	145280646	+	IGR	DNP	GT	TC	TC			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930984	53930984	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56230741	56230741	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57360897	57360897	+	IGR	SNP	T	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62586670	62586670	+	IGR	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020435	63020435	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63642885	63642885	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	75803559	75803559	+	IGR	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767766	9767766	+	IGR	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	10336049	10336049	+	IGR	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	4930292	4930292	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864503	110864503	+	IGR	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144713334	144713334	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179867	26179867	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49429606	49429606	+	IGR	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13488044	13488044	+	IGR	SNP	C	A	A	rs74525907		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	23630498	23630498	+	IGR	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608435	177608435	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219296603	219296603	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61036387	61036387	+	Intron	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177037184	177037184	+	Intron	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113081309	113081309	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT5B	81029	broad.mit.edu	37	12	1741938	1741938	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108618655	108618655	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73064626	73064626	+	RNA	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP14	57677	broad.mit.edu	37	19	36832235	36832235	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF253	56242	broad.mit.edu	37	19	20003571	20003571	+	3'UTR	DEL	A	-	-			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58439201	58439201	+	Silent	SNP	C	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49671380	49671380	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF454	285676	broad.mit.edu	37	5	178392687	178392687	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57194441	57194441	+	Intron	SNP	A	G	G			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512	84450	broad.mit.edu	37	2	27844189	27844189	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22902131	22902131	+	Frame_Shift_Del	DEL	C	-	-	rs7235917		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF528	84436	broad.mit.edu	37	19	52905228	52905228	+	5'UTR	SNP	A	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31025803	31025803	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85327613	85327613	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53678823	53678823	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF680	340252	broad.mit.edu	37	7	63982254	63982254	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF778	197320	broad.mit.edu	37	16	89294225	89294225	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88965549	88965549	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF880	400713	broad.mit.edu	37	19	52876489	52876489	+	Silent	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF3	84133	broad.mit.edu	37	22	29440884	29440884	+	Intron	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21213575	21213575	+	Silent	SNP	G	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050587	238050587	+	Intron	SNP	C	T	T	rs144651556	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	117907995	117907995	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58763580	58763580	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93974212	93974212	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33783402	33783402	+	5'Flank	SNP	G	T	T			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	38709604	38709604	+	Intron	SNP	T	C	C			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4059753	4059753	+	Intron	SNP	C	A	A			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
