Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA12	26154	broad.mit.edu	37	2	215834912	215834912	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139910731	139910731	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139910733	139910733	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2376065	2376065	+	Missense_Mutation	SNP	C	A	A	rs150902383		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89402517	89402517	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15058802	15058802	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACMSD	130013	broad.mit.edu	37	2	135630345	135630345	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131324307	131324307	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20432544	20432544	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236891000	236891000	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM17	6868	broad.mit.edu	37	2	9642186	9642186	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106208271	106208271	+	RNA	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106452657	106452657	+	Splice_Site	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH5	128	broad.mit.edu	37	4	100003329	100003329	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOR1	51094	broad.mit.edu	37	1	202912952	202912952	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOR2	79602	broad.mit.edu	37	12	1866754	1866754	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1D	146	broad.mit.edu	37	20	4228878	4228878	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRM1	11047	broad.mit.edu	37	20	60879670	60879670	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148048526	148048526	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF4	27125	broad.mit.edu	37	5	132278647	132278647	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38395944	38395945	+	Missense_Mutation	DNP	CA	TT	TT			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2	57679	broad.mit.edu	37	2	202580593	202580593	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT4	51378	broad.mit.edu	37	20	854801	854801	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41555497	41555497	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114279055	114279055	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKIB1	54467	broad.mit.edu	37	7	92021770	92021770	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70779419	70779419	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37414856	37414856	+	5'UTR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22233021	22233021	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANUBL1	93550	broad.mit.edu	37	10	46119944	46119944	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFRP1	10139	broad.mit.edu	37	20	62333384	62333384	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF1	9138	broad.mit.edu	37	19	42399487	42399487	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97214934	97214934	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6IP6	151188	broad.mit.edu	37	2	153575351	153575351	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPC3	10094	broad.mit.edu	37	12	110878302	110878302	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3028249	3028249	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB3	51130	broad.mit.edu	37	2	53956000	53956000	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976489	119976489	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1391655	1391655	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134365892	134365892	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1A	11177	broad.mit.edu	37	14	35224152	35224152	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23630285	23630285	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32688372	32688372	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC7	79444	broad.mit.edu	37	20	61869975	61869976	+	Intron	DNP	TG	CA	CA			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50192227	50192227	+	Silent	SNP	C	G	G	rs149829026		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107914364	107914364	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26509306	26509306	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40114522	40114522	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf63	123811	broad.mit.edu	37	16	15973809	15973809	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf92	146378	broad.mit.edu	37	16	30035098	30035098	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf35	374872	broad.mit.edu	37	19	2276472	2276472	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf54	113278	broad.mit.edu	37	20	746119	746119	+	Silent	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf81	391267	broad.mit.edu	37	21	15343760	15343760	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf29	80167	broad.mit.edu	37	4	128911006	128911006	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97562853	97562853	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49726662	49726662	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81641517	81641517	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54913187	54913187	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44323680	44323680	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110492073	110492073	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER4	378807	broad.mit.edu	37	1	26524847	26524847	+	Missense_Mutation	SNP	C	T	T	rs149779483	byFrequency	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC28B	79140	broad.mit.edu	37	1	32667458	32667458	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180377397	180377397	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31113225	31113225	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8	10694	broad.mit.edu	37	21	30435597	30435597	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74521813	74521813	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD4	920	broad.mit.edu	37	12	6909341	6909341	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100928175	100928175	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21884031	21884031	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26890441	26890441	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915702	26915702	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971140	21971140	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22305038	22305038	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48689456	48689456	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50857453	50857453	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1	1105	broad.mit.edu	37	5	98195662	98195662	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	433341	433341	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11217633	11217633	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT6	57472	broad.mit.edu	37	5	179976929	179976929	+	Splice_Site	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39073772	39073772	+	3'UTR	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125192268	125192268	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG4	25839	broad.mit.edu	37	16	70517776	70517776	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33137350	33137350	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111084624	111084624	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10087870	10087870	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10089181	10089181	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47409799	47409799	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238267600	238267600	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48614316	48614316	+	Splice_Site	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70963287	70963287	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	71004337	71004337	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS7B	64708	broad.mit.edu	37	2	232672167	232672167	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47628359	47628359	+	Intron	SNP	G	T	T	rs142131590	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17122243	17122243	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN2	1370	broad.mit.edu	37	3	194062055	194062055	+	Silent	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49802968	49802968	+	3'UTR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16953697	16953697	+	5'Flank	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16969685	16969685	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114111054	114111054	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68535156	68535156	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732279	11732279	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17110399	17110399	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17130324	17130324	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148463701	148463701	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48993665	48993665	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXXC4	80319	broad.mit.edu	37	4	105412047	105412049	+	In_Frame_Del	DEL	TCT	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37663315	37663315	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27B1	1594	broad.mit.edu	37	12	58160901	58160901	+	5'UTR	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C9	1559	broad.mit.edu	37	10	96746005	96746005	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72134055	72134055	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF10	79269	broad.mit.edu	37	9	37836342	37836342	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104442727	104442727	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF7	10238	broad.mit.edu	37	17	61657205	61657205	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155249289	155249289	+	Missense_Mutation	SNP	G	T	T	rs111557030	byFrequency	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA6	1671	broad.mit.edu	37	8	6782358	6782358	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1B	55789	broad.mit.edu	37	5	59982767	59982767	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGUOK	1716	broad.mit.edu	37	2	74166086	74166086	+	Silent	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95556997	95556997	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233195486	233195486	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP5	9787	broad.mit.edu	37	14	55625228	55625228	+	Intron	SNP	A	C	C	rs145664806	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP5	9787	broad.mit.edu	37	14	55625237	55625237	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13777522	13777522	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183597269	183597269	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58190433	58190433	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154263946	154263946	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784902	9784902	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574631	28574631	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28909825	28909825	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2	1938	broad.mit.edu	37	19	3976626	3976627	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38350497	38350497	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD2	30846	broad.mit.edu	37	19	48244176	48244176	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL3	1995	broad.mit.edu	37	19	11569323	11569323	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOF1	84337	broad.mit.edu	37	19	11664795	11664795	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL5	60481	broad.mit.edu	37	6	53133888	53133888	+	3'UTR	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111480849	111480849	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132194317	132194317	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L5	57669	broad.mit.edu	37	2	120851008	120851008	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93967241	93967241	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142562293	142562293	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110294457	110294457	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103460022	103460022	+	Silent	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESCO1	114799	broad.mit.edu	37	18	19110322	19110322	+	Silent	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118816780	118816780	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380184	139380184	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61022292	61022292	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A5	25817	broad.mit.edu	37	22	49103524	49103524	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961522	34961522	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49218951	49218951	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124810464	124810464	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92613965	92613965	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126389833	126389833	+	Silent	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147813274	147813274	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO47	494188	broad.mit.edu	37	17	37099079	37099079	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO47	494188	broad.mit.edu	37	17	37111054	37111054	+	Intron	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95773546	95773546	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14922045	14922045	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14964604	14964604	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21906998	21906998	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142451831	142451831	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128486554	128486554	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159646637	159646637	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXF2	2295	broad.mit.edu	37	6	1394885	1394885	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPA	2551	broad.mit.edu	37	21	27135271	27135271	+	Intron	DEL	G	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47408636	47408636	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161578664	161578664	+	Intron	DEL	T	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16261282	16261282	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173734827	173734827	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179734239	179734239	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117885022	117885022	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT5	2687	broad.mit.edu	37	22	24621594	24621594	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC1	10755	broad.mit.edu	37	19	14591185	14591185	+	Missense_Mutation	SNP	C	A	A	rs147512845		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR1	11010	broad.mit.edu	37	12	75875665	75875665	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL1	2794	broad.mit.edu	37	6	30514418	30514418	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133353213	133353213	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20327355	20327355	+	Nonsense_Mutation	SNP	G	T	T	rs140017290		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46096395	46096395	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135482182	135482182	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154147302	154147302	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94690314	94690314	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9857046	9857046	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88300589	88300589	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2A1	2957	broad.mit.edu	37	14	81668977	81668977	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127447933	127447933	+	Intron	SNP	C	A	A	rs55928142		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2AFY	9555	broad.mit.edu	37	5	134705393	134705393	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAND2	9464	broad.mit.edu	37	4	174450016	174450016	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121355331	121355331	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262097	45262097	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50535205	50535205	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41018431	41018431	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41038956	41038956	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELLS	3070	broad.mit.edu	37	10	96317849	96317849	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91816323	91816323	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81374216	81374216	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1E	3008	broad.mit.edu	37	6	26156797	26156797	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234762681	234762681	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176314386	176314386	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186120576	186120576	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186121913	186121913	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGA2	8091	broad.mit.edu	37	12	66221790	66221790	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPB11	51668	broad.mit.edu	37	1	54395706	54395706	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135593999	135593999	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25699521	25699521	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA8	3445	broad.mit.edu	37	9	21409376	21409376	+	Silent	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47075134	47075134	+	Silent	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17A	3605	broad.mit.edu	37	6	52052599	52052599	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29973557	29973557	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143033741	143033741	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1535817	1535817	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IP6K3	117283	broad.mit.edu	37	6	33696019	33696019	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75893132	75893132	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX6	79190	broad.mit.edu	37	16	55360397	55360397	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182400123	182400123	+	Intron	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15572984	15572984	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31283251	31283251	+	Silent	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB1	3688	broad.mit.edu	37	10	33214878	33214878	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20449248	20449248	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26596496	26596496	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	210970995	210970995	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3A	55818	broad.mit.edu	37	2	86683860	86683860	+	Intron	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27710904	27710904	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94148874	94148874	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28116239	28116239	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901330	51901330	+	Silent	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70681814	70681814	+	Silent	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KL	9365	broad.mit.edu	37	13	33635122	33635122	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-9	100132386	broad.mit.edu	37	17	39262039	39262039	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-10	387273	broad.mit.edu	37	11	71276953	71276953	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21426240	21426240	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21513860	21513860	+	Silent	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154169891	154169891	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71977220	71977220	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104308763	104308763	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75609600	75609600	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285359	285359	broad.mit.edu	37	3	101432007	101432007	+	RNA	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285501	285501	broad.mit.edu	37	4	178897064	178897064	+	RNA	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66146458	66146458	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22541165	22541165	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82062284	82062284	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH1	23143	broad.mit.edu	37	13	47297247	47297247	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42357300	42357300	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71151850	71151850	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM2	57819	broad.mit.edu	37	6	31765615	31765615	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75078524	75078524	+	Nonsense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24759849	24759849	+	Splice_Site	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2255962	2255962	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65272124	65272124	+	RNA	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21205695	21205695	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20034374	20034374	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186968219	186968219	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498890	66498890	+	RNA	SNP	G	T	T	rs113224740		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90504317	90504317	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37565089	37565089	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141718969	141718969	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL2	79778	broad.mit.edu	37	7	1498777	1498777	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129901424	129901424	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL5	55904	broad.mit.edu	37	7	104681552	104681552	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55532290	55532290	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37721643	37721643	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13112010	13112010	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60163969	60163969	+	5'UTR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60183087	60183087	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72755870	72755870	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1	4522	broad.mit.edu	37	14	64892569	64892569	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFR	4524	broad.mit.edu	37	1	11855491	11855491	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR2	8898	broad.mit.edu	37	11	95583771	95583771	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100675218	100675218	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77798752	77798752	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBPAP	84073	broad.mit.edu	37	17	48604672	48604673	+	Frame_Shift_Ins	INS	-	ACCACAG	ACCACAG			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10426663	10426663	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109614134	109614134	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171240387	171240387	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24434529	24434529	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST2	11143	broad.mit.edu	37	17	47904793	47904793	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400364	78400364	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16921553	16921553	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113076196	113076196	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5L	57701	broad.mit.edu	37	12	50197604	50197604	+	Intron	SNP	C	A	A	rs149294558	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133540623	133540623	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33338167	33338167	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	206992595	206992595	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91940423	91940423	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20699649	20699649	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204937915	204937915	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33290743	33290743	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL1	152519	broad.mit.edu	37	4	48038210	48038210	+	3'UTR	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247592823	247592823	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539800	56539800	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183221613	183221613	+	3'UTR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107950661	107950662	+	Intron	DNP	CC	AA	AA			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP153	9972	broad.mit.edu	37	6	17624952	17624952	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101095868	101095868	+	Splice_Site	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50966397	50966397	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248201977	248201977	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637257	248637257	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2Y1	134083	broad.mit.edu	37	5	180167004	180167004	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135556	55135556	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20443610	20443610	+	5'Flank	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51I2	390064	broad.mit.edu	37	11	5474954	5474954	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52J3	119679	broad.mit.edu	37	11	5068622	5068622	+	Silent	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4824745	4824746	+	Frame_Shift_Ins	INS	-	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B4	196335	broad.mit.edu	37	11	6129250	6129250	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AS1	219447	broad.mit.edu	37	11	55798578	55798578	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58125640	58125640	+	Silent	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B2	390190	broad.mit.edu	37	11	58189942	58189942	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158747139	158747139	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56125085	56125085	+	5'Flank	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72937963	72937963	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41861667	41861667	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	73967117	73967117	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI3	51702	broad.mit.edu	37	1	17603314	17603314	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17634768	17634768	+	Silent	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122411086	122411086	+	Intron	DEL	T	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134201	91134201	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91368333	91368333	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55569185	55569185	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55626616	55626616	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55913109	55913109	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559207	140559207	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82579564	82579564	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165863929	165863929	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183095827	183095827	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95373002	95373002	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136476907	136476907	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55156545	55156545	+	Silent	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15082576	15082576	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98469292	98469292	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2C	79837	broad.mit.edu	37	12	57995329	57995329	+	Silent	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9457374	9457374	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144993918	144993918	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131913287	131913287	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118357673	118357673	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19566042	19566042	+	Silent	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287281	16287281	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU1F1	5449	broad.mit.edu	37	3	87311358	87311358	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL2	23759	broad.mit.edu	37	22	22029478	22029478	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CC	5533	broad.mit.edu	37	8	22396941	22396941	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94708573	94708573	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB3	5544	broad.mit.edu	37	12	11421100	11421100	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11461837	11461837	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70964340	70964340	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151478496	151478496	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79461573	79461573	+	Silent	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79461594	79461594	+	Silent	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG11	5680	broad.mit.edu	37	19	43523176	43523176	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43433884	43433884	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43441198	43441198	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH	5741	broad.mit.edu	37	11	13514010	13514010	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87730997	87730997	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52384748	52384748	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX2	169714	broad.mit.edu	37	9	139108575	139108575	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL3	285282	broad.mit.edu	37	3	120417347	120417347	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36128440	36128440	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASD2	23551	broad.mit.edu	37	22	35948123	35948123	+	3'UTR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF5	83593	broad.mit.edu	37	1	206702435	206702435	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24582841	24582841	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127957592	127957592	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM44	375316	broad.mit.edu	37	2	238730509	238730509	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR3	55758	broad.mit.edu	37	1	211449715	211449715	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79365197	79365198	+	RNA	INS	-	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETNLB	84666	broad.mit.edu	37	3	108474545	108474545	+	3'UTR	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43602005	43602005	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL3	57139	broad.mit.edu	37	19	11527252	11527252	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240979707	240979707	+	Silent	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK1	83732	broad.mit.edu	37	6	7411714	7411714	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	86993215	86993215	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF145	153830	broad.mit.edu	37	5	158595962	158595962	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30776393	30776393	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77089846	77089846	+	5'UTR	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS27	6232	broad.mit.edu	37	1	153963202	153963202	+	5'Flank	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83419407	83419407	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78882742	78882742	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAS2	22800	broad.mit.edu	37	11	14316111	14316111	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	179008121	179008121	+	Intron	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92972678	92972678	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38949877	38949877	+	Silent	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237777623	237777623	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237837378	237837378	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237880547	237880547	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A13	6284	broad.mit.edu	37	1	153591308	153591308	+	3'UTR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169656275	169656275	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38798230	38798230	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835166	38835166	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835490	38835490	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52201252	52201252	+	3'UTR	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4285245	4285245	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102248506	102248506	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9054450	9054450	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94915055	94915055	+	Nonsense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	179986618	179986618	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38610527	38610527	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164756867	164756867	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92959804	92959804	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A26	115286	broad.mit.edu	37	3	66376823	66376823	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25674768	25674768	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44222605	44222605	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A5	92745	broad.mit.edu	37	X	48319027	48319027	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162830770	162830770	+	Silent	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32439311	32439311	+	Silent	SNP	C	A	A	rs33915717		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	306087	306087	+	Intron	SNP	G	T	T	rs145721574	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20599867	20599867	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168135055	168135055	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18880640	18880640	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51314846	51314846	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97158866	97158866	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX11	6664	broad.mit.edu	37	2	5833563	5833563	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231134799	231134799	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131347215	131347215	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPN	8082	broad.mit.edu	37	12	26377286	26377286	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149522263	149522263	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53045576	53045576	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL3	6487	broad.mit.edu	37	1	44257943	44257943	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM2	10254	broad.mit.edu	37	2	152991938	152991938	+	Intron	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23809344	23809344	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4508866	4508866	+	Intron	SNP	A	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX6	10228	broad.mit.edu	37	1	180953988	180953988	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120876387	120876387	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75596736	75596736	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113194879	113194879	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64449310	64449310	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64678627	64678627	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132938904	132938904	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143140889	143140889	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85453960	85453960	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115114056	115114056	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCFL5	10732	broad.mit.edu	37	20	61485231	61485231	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN1	6947	broad.mit.edu	37	11	59626664	59626664	+	Silent	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD3	7005	broad.mit.edu	37	6	35443917	35443917	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79351687	79351687	+	Silent	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70344875	70344875	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166916353	166916353	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166929311	166929311	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35707111	35707112	+	Frame_Shift_Ins	INS	-	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2596749	2596749	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF2	23671	broad.mit.edu	37	2	192818283	192818283	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM164	84187	broad.mit.edu	37	X	109414443	109414473	+	Intron	DEL	GAAATAAGTGGCAGGACAGAGGGCAGGAAGG	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM175	84286	broad.mit.edu	37	4	944247	944261	+	In_Frame_Del	DEL	GATTGCCGTCTACCT	-	-	rs142778595	byFrequency;by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68699064	68699064	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68964461	68964461	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS13	84000	broad.mit.edu	37	11	117799992	117799992	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111796027	111796027	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12250933	12250933	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1946372	1946372	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577108	7577108	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10908867	10908867	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10959674	10959674	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROVE2	6738	broad.mit.edu	37	1	193029172	193029172	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38225510	38225510	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45826051	45826051	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77377632	77377632	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2115705	2115705	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179526477	179526477	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179577475	179577475	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190905590	190905590	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	94735	94735	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404476	34404476	+	RNA	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP1	7350	broad.mit.edu	37	4	141489737	141489737	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35954564	35954564	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17731602	17731602	+	Intron	DEL	C	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73053228	73053228	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210642106	210642106	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216172523	216172523	+	Intron	SNP	T	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216246606	216246606	+	Missense_Mutation	SNP	C	A	A	rs111033409		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216495184	216495184	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11952185	11952185	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	9009019	9009019	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP11L	51118	broad.mit.edu	37	1	38478257	38478257	+	5'Flank	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107445329	107445329	+	IGR	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8662265	8662265	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	94966722	94966722	+	IGR	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55059859	55059859	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259017	55259017	+	IGR	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55972520	55972520	+	IGR	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143843	56143843	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016444	90016444	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126996060	126996060	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17142059	17142059	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53126221	53126221	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19532190	19532190	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45356620	45356620	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	50517080	50517080	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83159340	83159340	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79025974	79025974	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20166996	20166996	+	IGR	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31817786	31817786	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32168919	32168919	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33548175	33548175	+	IGR	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52831895	52831895	+	IGR	DEL	A	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20878758	20878758	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158415103	158415103	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115940	191115940	+	IGR	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79520670	79520670	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79903367	79903367	+	IGR	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873209	29873209	+	IGR	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132182508	132182508	+	IGR	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143613203	143613203	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210045614	210045614	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	231438589	231438589	+	IGR	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92102192	92102192	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180041841	180041841	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183835328	183835328	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74185463	74185463	+	IGR	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87100578	87100579	+	IGR	INS	-	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88998472	88998472	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98110588	98110588	+	IGR	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28824878	28824878	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012530	33012530	+	IGR	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69433722	69433722	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174345523	174345523	+	IGR	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304735	20304735	+	IGR	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97674724	97674724	+	IGR	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	10366742	10366742	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	73308741	73308741	+	IGR	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	139187259	139187259	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145280799	145280799	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53070596	53070596	+	IGR	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54487770	54487770	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636497	56636497	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033834	63033834	+	IGR	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63337130	63337130	+	IGR	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	30107117	30107117	+	IGR	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43529688	43529688	+	IGR	SNP	A	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90795928	90795928	+	IGR	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25213139	25213139	+	IGR	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402734	37402734	+	IGR	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79816923	79816923	+	IGR	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13524663	13524663	+	IGR	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VBP1	7411	broad.mit.edu	37	X	154464554	154464554	+	Silent	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177605217	177605220	+	Intron	DEL	ACTT	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128526403	128526403	+	Intron	SNP	T	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1902791	1902791	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32414287	32414287	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764127	77764127	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106810978	106810978	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE1	53349	broad.mit.edu	37	14	73445726	73445726	+	Intron	DEL	C	-	-			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68260749	68260749	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147130409	147130409	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF267	10308	broad.mit.edu	37	16	31926644	31926644	+	Silent	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF334	55713	broad.mit.edu	37	20	45130940	45130940	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21478677	21478677	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22932076	22932076	+	5'UTR	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF718	255403	broad.mit.edu	37	4	106368	106368	+	Intron	SNP	G	C	C			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58118282	58118283	+	Intron	DNP	CC	AA	AA			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22962381	22962381	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	15023180	15023180	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25032404	25032404	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159376000	159376000	+	Intron	SNP	T	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159376245	159376245	+	Intron	SNP	C	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90092029	90092029	+	Intron	SNP	C	T	T	rs2243781		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90212024	90212024	+	RNA	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90414317	90414317	+	Intron	SNP	C	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100607658	100607658	+	Intron	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124540	142124540	+	Intron	SNP	G	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142206846	142206846	+	Intron	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	76226057	76226057	+	Intron	SNP	A	G	G			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
