Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SETDB1	9869	broad.mit.edu	36	1	149190067	149190067	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	149190067	149190067	SETDB1	1	T	T	C	52
OR2B11	127623	broad.mit.edu	36	1	245681128	245681128	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	245681128	245681128	OR2B11	1	A	A	T	1
KCNK18	338567	broad.mit.edu	36	10	118950726	118950726	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	118950726	118950726	KCNK18	10	G	G	T	35
AP2A2	161	broad.mit.edu	36	11	984220	984220	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	984220	984220	AP2A2	11	C	C	G	24
PAX6	5080	broad.mit.edu	36	11	31772162	31772162	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31772162	31772162	PAX6	11	T	T	C	62
TRAF6	7189	broad.mit.edu	36	11	36468092	36468092	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36468092	36468092	TRAF6	11	C	C	T	28
AHNAK	79026	broad.mit.edu	36	11	62045707	62045707	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62045707	62045707	AHNAK	11	T	T	C	64
NRXN2	9379	broad.mit.edu	36	11	64209946	64209946	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	64209946	64209946	NRXN2	11	G	G	A	40
WSCD2	9671	broad.mit.edu	36	12	107166130	107166130	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	107166130	107166130	WSCD2	12	C	C	T	31
TUBA3C	7278	broad.mit.edu	36	13	18649364	18649364	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	18649364	18649364	TUBA3C	13	C	C	T	23
OR11G2	390439	broad.mit.edu	36	14	19735929	19735929	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19735929	19735929	OR11G2	14	G	G	A	40
TEP1	7011	broad.mit.edu	36	14	19939105	19939105	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19939105	19939105	TEP1	14	C	C	T	27
ERO1L	30001	broad.mit.edu	36	14	52189733	52189733	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	52189733	52189733	ERO1L	14	G	G	A	38
TP53	7157	broad.mit.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518990	7518990	TP53	17	A	A	G	12
AP2B1	163	broad.mit.edu	36	17	30993078	30993078	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30993078	30993078	AP2B1	17	G	G	A	36
ZNF407	55628	broad.mit.edu	36	18	70475759	70475759	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70475759	70475759	ZNF407	18	G	G	A	40
SLC25A23	79085	broad.mit.edu	36	19	6407446	6407446	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6407446	6407446	SLC25A23	19	G	G	C	33
ZC3H4	23211	broad.mit.edu	36	19	52285109	52285109	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52285109	52285109	ZC3H4	19	G	G	C	34
EHD3	30845	broad.mit.edu	36	2	31337004	31337004	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31337004	31337004	EHD3	2	C	C	A	18
TTN	7273	broad.mit.edu	36	2	179225077	179225077	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179225077	179225077	TTN	2	G	G	C	41
RFPL2	10739	broad.mit.edu	36	22	30916896	30916896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30916896	30916896	RFPL2	22	C	C	T	19
TRIOBP	11078	broad.mit.edu	36	22	36451808	36451808	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36451808	36451808	TRIOBP	22	C	C	T	30
MAPK12	6300	broad.mit.edu	36	22	49035898	49035898	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	49035898	49035898	MAPK12	22	C	C	T	25
ARSJ	79642	broad.mit.edu	36	4	115043506	115043506	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	115043506	115043506	ARSJ	4	C	C	T	32
STOX2	56977	broad.mit.edu	36	4	185168075	185168075	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	185168075	185168075	STOX2	4	C	C	T	31
PAPD7	11044	broad.mit.edu	36	5	6804185	6804185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6804185	6804185	PAPD7	5	G	G	A	48
RASGRF2	5924	broad.mit.edu	36	5	80399737	80399737	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	80399737	80399737	RASGRF2	5	G	G	A	37
APC	324	broad.mit.edu	36	5	112204836	112204836	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112204836	112204836	APC	5	A	A	T	9
PCDHB11	56125	broad.mit.edu	36	5	140560913	140560913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140560913	140560913	PCDHB11	5	G	G	A	38
PKHD1	5314	broad.mit.edu	36	6	52049080	52049080	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52049080	52049080	PKHD1	6	G	G	A	38
LTV1	84946	broad.mit.edu	36	6	144208937	144208937	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	144208937	144208937	LTV1	6	C	C	T	19
LAMB1	3912	broad.mit.edu	36	7	107403508	107403508	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107403508	107403508	LAMB1	7	A	A	G	13
CFTR	1080	broad.mit.edu	36	7	116969347	116969347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	116969347	116969347	CFTR	7	C	C	G	20
NUP205	23165	broad.mit.edu	36	7	134938258	134938258	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	134938258	134938258	NUP205	7	C	C	T	25
TMEM139	135932	broad.mit.edu	36	7	142693871	142693871	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	142693871	142693871	TMEM139	7	C	C	G	30
EPHA1	2041	broad.mit.edu	36	7	142808686	142808686	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	142808686	142808686	EPHA1	7	G	G	A	41
GPR173	54328	broad.mit.edu	36	X	53122815	53122815	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53122815	53122815	GPR173	23	G	G	T	46
ABCB7	22	broad.mit.edu	36	X	74211977	74211977	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74211977	74211977	ABCB7	23	A	A	G	5
KNTC1	9735	broad.mit.edu	36	12	121655545	121655548	+	Frame_Shift_Del	DEL	ATCA	-	ATCA	novel	Unknown	TCGA-61-1919-01	TCGA-61-1919-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	121655545	121655548	KNTC1	12	ATCA	-	ATCA	8
