Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFF2	2334	genome.wustl.edu	37	X	147744200	147744200	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	X	147744200	147744200	C	A	SNP	AFF2	NM_002025.3	human	genbank	58_37c	+1	reviewed	missense	c.952	p.L318M	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AGRN	375790	genome.wustl.edu	37	1	985656	985656	+	Silent	SNP	C	C	T	rs148789015	by1000genomes	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	985656	985656	C	T	SNP	AGRN	NM_198576.2	human	genbank	58_37c	+1	validated	silent	c.4923	p.N1641	0.000	superfamily_ConA_like_lec_gl	HMMPfam_SEA,HMMSmart_SEA,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Kazal_1,HMMSmart_KAZAL,HMMSmart_FOLN,HMMPfam_NtA,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,superfamily_TIMP_like,HMMPfam_Laminin_G_1,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF100895,superfamily_SSF57196,superfamily_SSF82671	-	no_errors
AKAP11	11215	genome.wustl.edu	37	13	42875568	42875568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	13	42875568	42875568	G	A	SNP	AKAP11	NM_016248.2	human	genbank	58_37c	+1	reviewed	missense	c.2686	p.V896I	0.104	NULL	NULL	-	no_errors
BOC	91653	genome.wustl.edu	37	3	113005658	113005658	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	113005658	113005658	C	T	SNP	BOC	NM_033254.2	human	genbank	58_37c	+1	validated	silent	c.3294	p.S1098	0.000	NULL	PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_CYTOCHROME_P450,superfamily_Immunoglobulin	-	no_errors
C4orf31	79625	genome.wustl.edu	37	4	121966920	121966920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	4	121966920	121966920	G	A	SNP	C4orf31	NM_024574.3	human	genbank	58_37c	-1	validated	missense	c.73	p.R25W	0.979	NULL	HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_DUF2369	-	no_errors
C9orf130	286354	genome.wustl.edu	37	9	98638242	98638242	+	RNA	SNP	T	T	G	rs141071823	by1000genomes	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	9	98638242	98638242	T	G	SNP	C9orf130	NR_023389.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
CACNA1C	775	genome.wustl.edu	37	12	2797846	2797846	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	12	2797846	2797846	C	T	SNP	CACNA1C	NM_199460.2	human	genbank	58_37c	+1	reviewed	silent	c.6267	p.S2089	0.926	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CLTCL1	8218	genome.wustl.edu	37	22	19203720	19203720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	22	19203720	19203720	G	A	SNP	CLTCL1	NM_007098.3	human	genbank	58_37c	-1	reviewed	missense	c.2966	p.S989L	0.996	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat	HMMPfam_Clathrin,HMMSmart_SM00299,HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin-link,superfamily_ARM repeat	-	no_errors
COL29A1	256076	genome.wustl.edu	37	3	130116502	130116502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	130116502	130116502	C	T	SNP	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	missense	c.3644	p.P1215L	0.043	superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67654645	67654645	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	16	67654645	67654645	C	G	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	missense	c.1132	p.P378A	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DIP2C	22982	genome.wustl.edu	37	10	323355	323355	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	323355	323355	G	A	SNP	DIP2C	NM_014974.2	human	genbank	58_37c	-1	reviewed	silent	c.4581	p.I1527	1.000	superfamily_SSF56801	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
DOCK10	55619	genome.wustl.edu	37	2	225729785	225729785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	2	225729785	225729785	C	T	SNP	DOCK10	NM_014689.2	human	genbank	58_37c	-1	validated	missense	c.1277	p.S426N	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto,superfamily_PH domain-like	-	no_errors
E2F6	1876	genome.wustl.edu	37	2	11586417	11586417	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	2	11586417	11586417	G	A	SNP	E2F6	NR_003092.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
ENSG00000181943	0	genome.wustl.edu	37	11	55259570	55259570	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	11	55259570	55259570	G	T	SNP	ENSG00000181943	ENST00000314657	human	ensembl	58_37c	+1	known	missense	c.852	p.R284S	0.978	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ENSG00000221138	0	genome.wustl.edu	37	15	33256250	33256251	+	RNA	DEL	AT	AT	-	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	15	33256250	33256251	AT	-	DEL	ENSG00000221138	ENST00000408211	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.020:0.032	-	-	-	no_errors
ENSG00000237368	0	genome.wustl.edu	37	18	14156234	14156234	+	Silent	SNP	A	A	G	rs138913613	by1000genomes	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	18	14156234	14156234	A	G	SNP	NF1L5	ENST00000418350	human	ensembl	58_37c	-1	known	silent	c.264	p.I88	0.009	NULL	NULL	-	no_errors
ESPNP	0	genome.wustl.edu	37	1	17046549	17046549	+	RNA	SNP	G	G	A	rs1755332	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	17046549	17046549	G	A	SNP	ESPNP	NR_026567.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
GRHL2	79977	genome.wustl.edu	37	8	102661656	102661656	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	8	102661656	102661656	A	T	SNP	GRHL2	NM_024915.3	human	genbank	58_37c	+1	reviewed	missense	c.1627	p.R543W	1.000	NULL	HMMPfam_CP2	-	no_errors
IPPK	64768	genome.wustl.edu	37	9	95381788	95381788	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	9	95381788	95381788	A	G	SNP	IPPK	NM_022755.4	human	genbank	58_37c	-1	validated	silent	c.1230	p.S410	0.979	HMMPfam_Ins_P5_2-kin	HMMPfam_Ins_P5_2-kin	-	no_errors
IQCG	84223	genome.wustl.edu	37	3	197618393	197618393	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	197618393	197618393	A	G	SNP	IQCG	NM_001134435.1	human	genbank	58_37c	-1	validated	missense	c.1121	p.I374T	1.000	NULL	HMMPfam_IQ	-	no_errors
KCNV1	27012	genome.wustl.edu	37	8	110980575	110980575	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	8	110980575	110980575	C	T	SNP	KCNV1	NM_014379.2	human	genbank	58_37c	-1	reviewed	silent	c.1245	p.S415	0.234	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KCTD7	154881	genome.wustl.edu	37	7	66103260	66103260	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	66103260	66103260	G	T	SNP	KCTD7	NM_153033.3	human	genbank	58_37c	+1	validated	missense	c.335	p.R112L	1.000	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain	-	no_errors
MACF1	23499	genome.wustl.edu	37	1	39853331	39853331	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	39853331	39853331	G	C	SNP	MACF1	NM_033044.2	human	genbank	58_37c	+1	reviewed	missense	c.10137	p.E3379D	0.959	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
MEPCE	56257	genome.wustl.edu	37	7	100028415	100028415	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	100028415	100028415	T	A	SNP	MEPCE	NM_019606.4	human	genbank	58_37c	+1	provisional	silent	c.774	p.T258	1.000	NULL	HMMPfam_Bin3,superfamily_SSF53335	-	no_errors
MFSD11	79157	genome.wustl.edu	37	17	74772590	74772590	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	17	74772590	74772590	C	T	SNP	MFSD11	NM_024311.2	human	genbank	58_37c	+1	provisional	silent	c.1152	p.S384	0.218	superfamily_MFS general substrate transporter	HMMPfam_DUF895,superfamily_MFS general substrate transporter	-	no_errors
NEK8	284086	genome.wustl.edu	37	17	27068449	27068449	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	17	27068449	27068449	G	C	SNP	NEK8	NM_178170.2	human	genbank	58_37c	+1	reviewed	missense	c.1910	p.W637S	1.000	superfamily_RCC1/BLIP-II	HMMPfam_RCC1,PatternScan_RCC1_1,PatternScan_RCC1_2,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
OR6C2	341416	genome.wustl.edu	37	12	55846918	55846918	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	12	55846918	55846918	A	G	SNP	OR6C2	NM_054105.1	human	genbank	58_37c	+1	provisional	silent	c.921	p.A307	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PADI4	23569	genome.wustl.edu	37	1	17668843	17668843	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	17668843	17668843	C	T	SNP	PADI4	NM_012387.2	human	genbank	58_37c	+1	reviewed	missense	c.881	p.A294V	0.995	HMMPfam_PAD,superfamily_Pentein	superfamily_Cupredoxins,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,superfamily_Pentein	-	no_errors
PALM3	342979	genome.wustl.edu	37	19	14165287	14165287	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	14165287	14165287	C	T	SNP	PALM3	NM_001145028.1	human	genbank	58_37c	-1	validated	silent	c.1152	p.T384	0.000	NULL	NULL	-	no_errors
PCDHB17	54661	genome.wustl.edu	37	5	140537592	140537592	+	RNA	SNP	C	C	T	rs246695	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	5	140537592	140537592	C	T	SNP	PCDHB17	NR_001280.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.997	-	-	-	pseudogene
PIK3R1	5295	genome.wustl.edu	37	5	67589607	67589608	+	In_Frame_Ins	INS	-	-	AGAAAAAAGTCG	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	5	67589607	67589608	-	AGAAAAAAGTCG	INS	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1370_1371	p.461in_frame_insREKS	1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PLXNA1	5361	genome.wustl.edu	37	3	126736736	126736736	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	126736736	126736736	G	A	SNP	PLXNA1	NM_032242.3	human	genbank	58_37c	+1	validated	splice_site	c.3591+1	e18+1	1.000	-	-	-	no_errors
PTCHD1	139411	genome.wustl.edu	37	X	23397729	23397729	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	X	23397729	23397729	A	T	SNP	PTCHD1	NM_173495.2	human	genbank	58_37c	+1	validated	missense	c.373	p.I125F	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
SLC9A1	6548	genome.wustl.edu	37	1	27436074	27436074	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	27436074	27436074	G	C	SNP	SLC9A1	NM_003047.3	human	genbank	58_37c	-1	validated	silent	c.1008	p.L336	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
SLC9A11	284525	genome.wustl.edu	37	1	173542380	173542380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	173542380	173542380	G	A	SNP	SLC9A11	NM_178527.3	human	genbank	58_37c	-1	validated	silent	c.987	p.H329	0.010	HMMPfam_Na_H_Exchanger	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
STARD7	56910	genome.wustl.edu	37	2	96861112	96861112	+	Missense_Mutation	SNP	G	G	A	rs149097861	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	2	96861112	96861112	G	A	SNP	STARD7	NM_020151.3	human	genbank	58_37c	-1	validated	missense	c.466	p.P156S	1.000	HMMPfam_START,HMMSmart_START,superfamily_SSF55961	HMMPfam_START,HMMSmart_START,superfamily_SSF55961	-	no_errors
TRIP11	9321	genome.wustl.edu	37	14	92499550	92499550	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	14	92499550	92499550	T	C	SNP	TRIP11	NM_004239.3	human	genbank	58_37c	-1	reviewed	missense	c.187	p.I63V	0.513	NULL	NULL	-	no_errors
UPF1	5976	genome.wustl.edu	37	19	18965708	18965708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	18965708	18965708	C	T	SNP	UPF1	NM_002911.3	human	genbank	58_37c	+1	reviewed	missense	c.1286	p.T429M	0.997	NULL	HMMPfam_ResIII,HMMPfam_UPF1_Zn_bind,superfamily_SSF52540	-	no_errors
ZNF578	147660	genome.wustl.edu	37	19	53014601	53014601	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	53014601	53014601	T	A	SNP	ZNF578	NM_001099694.1	human	genbank	58_37c	+1	validated	missense	c.967	p.S323T	0.016	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF878	0	genome.wustl.edu	37	19	12164066	12164066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	12164066	12164066	C	T	SNP	ZNF878	NM_001080404.1	human	genbank	58_37c	-1	inferred	silent	c.54	p.G18	0.013	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
