Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC8	0	genome.wustl.edu	37	11	17434216	17434216	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	11	17434216	17434216	G	A	SNP	ABCC8	NM_000352.3	human	genbank	58_37c	-1	reviewed	silent	c.2553	p.F851	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADAMTS13	0	genome.wustl.edu	37	9	136324188	136324189	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	9	136324188	136324189	-	A	INS	ADAMTS13	NM_139025.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.4170_4171	p.S1390fs	0.518:0.519	superfamily_Spermadhesin CUB domain	"superfamily_Spermadhesin CUB domain,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Peptidase_M10,HMMSmart_SM00608,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKD1	0	genome.wustl.edu	37	6	109850199	109850201	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	6	109850199	109850201	AAC	-	DEL	AKD1	ENST00000355283	human	ensembl	58_37c	-1	known	in_frame_del	c.885_883	p.V295in_frame_del	0.003:0.000:0.000	NULL	HMMPfam_ADK,HMMPfam_YHS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ALMS1	0	genome.wustl.edu	37	2	73635817	73635817	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	73635817	73635817	C	G	SNP	ALMS1	NM_015120.4	human	genbank	58_37c	+1	reviewed	missense	c.392	p.S131C	0.535	NULL	NULL	-	no_errors
APCDD1	0	genome.wustl.edu	37	18	10487617	10487617	+	Missense_Mutation	SNP	C	C	A	rs148807402	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	18	10487617	10487617	C	A	SNP	APCDD1	NM_153000.4	human	genbank	58_37c	+1	validated	missense	c.1127	p.A376E	0.008	NULL	NULL	-	no_errors
ATP10D	0	genome.wustl.edu	37	4	47560135	47560135	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	4	47560135	47560135	G	C	SNP	ATP10D	NM_020453.3	human	genbank	58_37c	+1	validated	missense	c.2279	p.G760A	0.998	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
ATR	0	genome.wustl.edu	37	3	142234359	142234359	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	142234359	142234359	T	C	SNP	ATR	NM_001184.3	human	genbank	58_37c	-1	reviewed	splice_site	c.4383-2	e25-2	1.000	-	-	-	no_errors
C1QA	0	genome.wustl.edu	37	1	22965464	22965464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	22965464	22965464	G	A	SNP	C1QA	NM_015991.2	human	genbank	58_37c	+1	reviewed	missense	c.302	p.G101D	0.997	HMMPfam_Collagen	HMMPfam_C1q,HMMSmart_SM00110,HMMPfam_Collagen,superfamily_TNF-like	-	no_errors
C5orf32	0	genome.wustl.edu	37	5	139574060	139574060	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	5	139574060	139574060	G	C	SNP	C5orf32	NM_032412.3	human	genbank	58_37c	+1	validated	missense	c.10	p.E4Q	0.967	NULL	NULL	-	no_errors
C6orf125	0	genome.wustl.edu	37	6	33679361	33679361	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	6	33679361	33679361	C	A	SNP	C6orf125	NM_032340.2	human	genbank	58_37c	-1	predicted	missense	c.103	p.V35L	1.000	NULL	NULL	-	no_errors
C6orf138	0	genome.wustl.edu	37	6	47846156	47846156	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	6	47846156	47846156	C	T	SNP	C6orf138	NM_001013732.3	human	genbank	58_37c	-1	validated	silent	c.2373	p.T791	0.997	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
COL6A3	0	genome.wustl.edu	37	2	238277616	238277616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	238277616	238277616	G	A	SNP	COL6A3	NM_004369.3	human	genbank	58_37c	-1	reviewed	missense	c.4490	p.A1497V	0.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
CWC22	0	genome.wustl.edu	37	2	180858042	180858042	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	180858042	180858042	T	G	SNP	CWC22	NM_020943.2	human	genbank	58_37c	-1	validated	missense	c.27	p.K9N	1.000	NULL	HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,superfamily_ARM repeat	-	no_errors
DARC	0	genome.wustl.edu	37	1	159175653	159175653	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	159175653	159175653	G	T	SNP	DARC	NM_001122951.1	human	genbank	58_37c	+1	reviewed	missense	c.430	p.A144S	1.000	NULL	NULL	-	no_errors
DDX24	0	genome.wustl.edu	37	14	94524189	94524189	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	14	94524189	94524189	G	T	SNP	DDX24	NM_020414.3	human	genbank	58_37c	-1	reviewed	silent	c.1968	p.V656	0.977	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
DDX58	0	genome.wustl.edu	37	9	32459494	32459494	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	9	32459494	32459494	G	A	SNP	DDX58	NM_014314.3	human	genbank	58_37c	-1	reviewed	missense	c.2356	p.H786Y	0.006	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ELOVL5	0	genome.wustl.edu	37	6	53133926	53133926	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	6	53133926	53133926	C	T	SNP	ELOVL5	NM_021814.3	human	genbank	58_37c	-1	provisional	silent	c.899	p.*300	1.000	NULL	HMMPfam_ELO,PatternScan_ELO	-	no_errors
ENPP7	0	genome.wustl.edu	37	17	77705092	77705092	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	77705092	77705092	C	A	SNP	ENPP7	NM_178543.3	human	genbank	58_37c	+1	validated	missense	c.191	p.A64E	1.000	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core	-	no_errors
ENSG00000175388	0	genome.wustl.edu	37	18	10761023	10761023	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	18	10761023	10761023	C	T	SNP	ENSG00000175388	ENST00000383408	human	ensembl	58_37c	-1	known	silent	c.1125	p.T375	0.846	NULL	NULL	-	no_stop_codon
ENSG00000198888	0	genome.wustl.edu	37	MT	3967	3967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	MT	3967	3967	G	A	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.661	p.A221T	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9504	9504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	MT	9504	9504	G	A	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.298	p.A100T	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000247072	0	genome.wustl.edu	37	15	83513971	83513982	+	RNA	DEL	CACACACACACA	CACACACACACA	-	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	CACACACACACA	CACACACACACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	15	83513971	83513982	CACACACACACA	-	DEL	ENSG00000247072	ENST00000499367	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.002:0.001:0.000:0.002:0.000:0.000:0.004:0.004:0.003:0.005:0.018:0.002	-	-	-	no_errors
ESPL1	0	genome.wustl.edu	37	12	53670885	53670885	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	53670885	53670885	C	A	SNP	ESPL1	NM_012291.4	human	genbank	58_37c	+1	validated	silent	c.1959	p.I653	0.997	NULL	HMMPfam_Peptidase_C50	-	no_errors
FBF1	0	genome.wustl.edu	37	17	73924235	73924235	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	73924235	73924235	T	C	SNP	FBF1	NM_001080542.1	human	genbank	58_37c	-1	provisional	missense	c.277	p.K93E	0.975	NULL	NULL	-	no_errors
GTF3C2	0	genome.wustl.edu	37	2	27551716	27551716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	27551716	27551716	C	T	SNP	GTF3C2	NM_001035521.1	human	genbank	58_37c	-1	validated	missense	c.2122	p.V708I	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
GUCY1B3	0	genome.wustl.edu	37	4	156724917	156724917	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	4	156724917	156724917	G	A	SNP	GUCY1B3	NM_000857.2	human	genbank	58_37c	+1	validated	splice_site	c.1554+1	e11+1	1.000	-	-	-	no_errors
GZF1	0	genome.wustl.edu	37	20	23345750	23345750	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	20	23345750	23345750	C	A	SNP	GZF1	NM_022482.3	human	genbank	58_37c	+1	validated	missense	c.730	p.L244I	0.273	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152188999	152188999	+	Silent	SNP	G	G	A	rs149648668	byFrequency	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	152188999	152188999	G	A	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	silent	c.5106	p.H1702	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IGSF3	0	genome.wustl.edu	37	1	117131545	117131545	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	117131545	117131545	G	A	SNP	IGSF3	NM_001542.2	human	genbank	58_37c	-1	validated	silent	c.2271	p.S757	0.887	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
IQSEC3	0	genome.wustl.edu	37	12	266274	266274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	266274	266274	G	A	SNP	IQSEC3	NM_015232.1	human	genbank	58_37c	+1	validated	missense	c.1328	p.G443E	1.000	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMSmart_PH,superfamily_SSF50729	-	no_errors
ITPR2	0	genome.wustl.edu	37	12	26755633	26755633	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	26755633	26755633	T	C	SNP	ITPR2	NM_002223.2	human	genbank	58_37c	-1	validated	missense	c.3469	p.N1157D	0.865	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
KIAA1012	0	genome.wustl.edu	37	18	29480941	29480941	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	18	29480941	29480941	T	C	SNP	KIAA1012	NM_014939.3	human	genbank	58_37c	-1	validated	silent	c.1437	p.P479	0.243	NULL	superfamily_TPR-like	-	no_errors
KIAA1755	0	genome.wustl.edu	37	20	36841476	36841476	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	20	36841476	36841476	A	G	SNP	KIAA1755	NM_001029864.1	human	genbank	58_37c	-1	predicted	missense	c.3571	p.S1191P	0.998	NULL	superfamily_Spectrin repeat	-	no_errors
KRTAP9-9	0	genome.wustl.edu	37	17	39411670	39411671	+	In_Frame_Ins	INS	-	-	ACCTGCTGCAGGACC	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	39411670	39411671	-	ACCTGCTGCAGGACC	INS	KRTAP9-9	NM_030975.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.33_34	p.15in_frame_insTTCCR	0.053:0.940	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LAMA1	0	genome.wustl.edu	37	18	7042194	7042194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	18	7042194	7042194	G	A	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	missense	c.1211	p.S404F	1.000	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LBR	0	genome.wustl.edu	37	1	225609856	225609856	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	225609856	225609856	A	C	SNP	LBR	NM_002296.2	human	genbank	58_37c	-1	reviewed	missense	c.289	p.S97A	0.000	NULL	HMMPfam_ERG4_ERG24,HMMSmart_TUDOR,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2,HMMPfam_LBR_tudor	-	no_errors
LOC100288117	0	genome.wustl.edu	37	21	20230135	20230135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	21	20230135	20230135	C	T	SNP	LOC100288117	XM_002343738.1	human	genbank	58_37c	-1	model	missense	c.172	p.V58I	0.604	NULL	NULL	-	no_errors
LOC152845	0	genome.wustl.edu	37	4	85166513	85166513	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	4	85166513	85166513	C	T	SNP	LOC152845	XR_038721.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC651714	0	genome.wustl.edu	37	3	195346312	195346312	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	195346312	195346312	C	T	SNP	LOC651714	XR_078298.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.132	-	-	-	pseudogene
LPPR2	0	genome.wustl.edu	37	19	11470279	11470279	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	19	11470279	11470279	C	T	SNP	LPPR2	NM_022737.2	human	genbank	58_37c	+1	validated	silent	c.138	p.T46	0.974	NULL	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase	-	no_errors
LTBP1	0	genome.wustl.edu	37	2	33585833	33585833	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	33585833	33585833	G	T	SNP	LTBP1	NM_206943.2	human	genbank	58_37c	+1	reviewed	silent	c.4173	p.P1391	0.005	HMMPfam_TB,superfamily_TB module/8-cys domain	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
MMP28	0	genome.wustl.edu	37	17	34105965	34105965	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	34105965	34105965	C	A	SNP	MMP28	NM_001032278.1	human	genbank	58_37c	-1	reviewed	missense	c.306	p.W102C	0.997	NULL	HMMPfam_PG_binding_1,superfamily_PGBD_like	-	no_errors
MT-CYB	0	genome.wustl.edu	37	MT	14804	14804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	MT	14804	14804	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	missense	c.58	p.D20N	NULL	HMMPfam_Cytochrom_B_N,superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MUC16	0	genome.wustl.edu	37	19	9060763	9060763	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	19	9060763	9060763	T	G	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.26683	p.T8895P	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYBL1	0	genome.wustl.edu	37	8	67509563	67509563	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	8	67509563	67509563	A	T	SNP	MYBL1	NM_001080416.2	human	genbank	58_37c	-1	validated	splice_site	c.512+2	e5+2	1.000	-	-	-	no_errors
MYH6	0	genome.wustl.edu	37	14	23858706	23858706	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	14	23858706	23858706	G	A	SNP	MYH6	NM_002471.3	human	genbank	58_37c	-1	validated	nonsense	c.3874	p.Q1292*	1.000	HMMPfam_Myosin_tail_1,superfamily_Prefoldin	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR2AG2	0	genome.wustl.edu	37	11	6789589	6789589	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	11	6789589	6789589	G	A	SNP	OR2AG2	NM_001004490.1	human	genbank	58_37c	-1	provisional	silent	c.600	p.Y200	0.018	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2L1P	0	genome.wustl.edu	37	1	248153728	248153728	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	248153728	248153728	C	T	SNP	OR2L1P	NR_002145.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.978	-	-	-	pseudogene
OR5H1	0	genome.wustl.edu	37	3	97852403	97852403	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	97852403	97852403	A	G	SNP	OR5H1	NM_001005338.1	human	genbank	58_37c	+1	provisional	missense	c.862	p.I288V	0.002	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHA12	0	genome.wustl.edu	37	5	140255068	140255068	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	5	140255068	140255068	T	C	SNP	PCDHA12	NM_018903.2	human	genbank	58_37c	+1	reviewed	missense	c.11	p.I4T	0.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHOSPHO1	0	genome.wustl.edu	37	17	47302390	47302392	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	17	47302390	47302392	AGG	-	DEL	PHOSPHO1	NM_001143804.1	human	genbank	58_37c	-1	validated	in_frame_del	c.97_95	p.S32in_frame_del	0.092:0.143:0.249	NULL	HMMPfam_Put_Phosphatase,superfamily_HAD-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	178916938	178916940	GAA	-	DEL	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.325_327	p.E110in_frame_del	1.000:1.000:1.000	superfamily_SSF54236	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKHD1L1	0	genome.wustl.edu	37	8	110471843	110471844	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	8	110471843	110471844	-	A	INS	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.7024_7025	p.M2344fs	1.000:1.000	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
PLD1	0	genome.wustl.edu	37	3	171406629	171406629	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	3	171406629	171406629	T	C	SNP	PLD1	NM_002662.3	human	genbank	58_37c	-1	validated	missense	c.1376	p.Y459C	0.996	HMMPfam_PLDc,HMMSmart_SM00155,superfamily_Phospholipase D/nuclease	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PLDc,HMMSmart_SM00155,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_Phospholipase D/nuclease	-	no_errors
PROKR1	0	genome.wustl.edu	37	2	68882542	68882542	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	2	68882542	68882542	C	T	SNP	PROKR1	NM_138964.2	human	genbank	58_37c	+1	validated	missense	c.1016	p.T339I	0.997	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PSD2	0	genome.wustl.edu	37	5	139193009	139193009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	5	139193009	139193009	G	A	SNP	PSD2	NM_032289.2	human	genbank	58_37c	+1	provisional	missense	c.487	p.G163R	1.000	NULL	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
RP1L1	0	genome.wustl.edu	37	8	10467629	10467630	+	In_Frame_Ins	INS	-	-	TTC	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	8	10467629	10467630	-	TTC	INS	RP1L1	NM_178857.5	human	genbank	58_37c	-1	validated	in_frame_ins	c.3979_3978	p.1326in_frame_insE	0.000:0.000	NULL	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
SEMG2	0	genome.wustl.edu	37	20	43851070	43851070	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	20	43851070	43851070	A	T	SNP	SEMG2	NM_003008.2	human	genbank	58_37c	+1	reviewed	missense	c.797	p.N266I	0.001	HMMPfam_Semenogelin	HMMPfam_Semenogelin	-	no_errors
SEPT1	0	genome.wustl.edu	37	16	30393472	30393472	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	16	30393472	30393472	G	C	SNP	SEPT1	NM_052838.2	human	genbank	58_37c	-1	reviewed	silent	c.123	p.L41	1.000	HMMPfam_Septin,superfamily_SSF52540	HMMPfam_Septin,superfamily_SSF52540	-	no_errors
SEPT12	0	genome.wustl.edu	37	16	4835875	4835875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	16	4835875	4835875	C	T	SNP	SEPT12	NM_144605.3	human	genbank	58_37c	-1	validated	missense	c.307	p.G103S	0.999	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SLC38A2	0	genome.wustl.edu	37	12	46754960	46754960	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	12	46754960	46754960	C	T	SNP	SLC38A2	NM_018976.4	human	genbank	58_37c	-1	validated	silent	c.1455	p.V485	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SRRM1	0	genome.wustl.edu	37	1	24972547	24972547	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	24972547	24972547	G	A	SNP	SRRM1	NM_005839.3	human	genbank	58_37c	+1	validated	missense	c.94	p.E32K	1.000	superfamily_PWI domain	HMMPfam_PWI,HMMSmart_SM00311,superfamily_PWI domain	-	no_errors
UBR4	0	genome.wustl.edu	37	1	19518987	19518987	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	1	19518987	19518987	C	A	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	silent	c.1191	p.R397	1.000	NULL	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
ZFP106	0	genome.wustl.edu	37	15	42743987	42743987	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	15	42743987	42743987	G	A	SNP	ZFP106	NM_022473.1	human	genbank	58_37c	-1	provisional	silent	c.414	p.G138	1.000	NULL	HMMSmart_WD40,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_WD40_like,HMMSmart_ZnF_C2H2,HMMSmart_PQQ,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZNF780A	0	genome.wustl.edu	37	19	40581727	40581727	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A25D-01A-12D-A16D-09	TCGA-A2-A25D-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	56b152c3-9de5-4b1c-b6b4-0116cb7ce097	a65719dd-2213-43c2-9f5b-1e82632009dc	19	40581727	40581727	A	C	SNP	ZNF780A	NM_001142577.1	human	genbank	58_37c	-1	validated	missense	c.625	p.F209V	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
