Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BRCA2	0	genome.wustl.edu	37	13	32954172	32954172	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	13	32954172	32954172	A	C	SNP	BRCA2	NM_000059.3	human	genbank	58_37c	+1	reviewed	missense	c.9146	p.Y3049S	0.998	superfamily_Nucleic_acid_OB	HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	12379	12379	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	MT	12379	12379	C	T	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	silent	c.43	p.L15	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
HLA-DRB6	0	genome.wustl.edu	37	6	32520834	32520844	+	RNA	DEL	GTCCAGCGCAG	GTCCAGCGCAG	-	novel	unknown	TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	GTCCAGCGCAG	GTCCAGCGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	6	32520834	32520844	GTCCAGCGCAG	-	DEL	HLA-DRB6	NR_001298.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.995:0.988:0.985:0.943:0.810:0.673:0.530:0.488:0.478:0.468:0.458	-	-	-	pseudogene
KLK5	0	genome.wustl.edu	37	19	51452257	51452257	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25F-01A-11D-A167-09	TCGA-A2-A25F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ed40576-4f1c-4cf6-8eea-e816c5d73d90	26fd695a-be03-4a4c-95c2-937216977eb1	19	51452257	51452257	G	A	SNP	KLK5	NM_001077491.1	human	genbank	58_37c	-1	reviewed	silent	c.450	p.H150	0.980	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
