Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACACB	32	genome.wustl.edu	37	12	109654723	109654723	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	12	109654723	109654723	A	T	SNP	ACACB	NM_001093.3	human	genbank	58_37c	+1	reviewed	missense	c.3562	p.I1188F	1.000	HMMPfam_ACC_central	HMMPfam_Carboxyl_trans,HMMPfam_Biotin_lipoyl,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,superfamily_Rudiment single hybrid motif,HMMPfam_ACC_central,superfamily_PreATP-grasp domain,superfamily_ClpP/crotonase,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
ADCY5	111	genome.wustl.edu	37	3	123021902	123021902	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	3	123021902	123021902	C	A	SNP	ADCY5	NM_183357.1	human	genbank	58_37c	-1	validated	missense	c.2724	p.E908D	1.000	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AFF4	27125	genome.wustl.edu	37	5	132228002	132228002	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	132228002	132228002	G	C	SNP	AFF4	NM_014423.3	human	genbank	58_37c	-1	validated	missense	c.2491	p.R831G	0.998	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AOC3	8639	genome.wustl.edu	37	17	41004004	41004004	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	17	41004004	41004004	C	T	SNP	AOC3	NM_003734.2	human	genbank	58_37c	+1	reviewed	missense	c.644	p.P215L	0.999	HMMPfam_Cu_amine_oxidN3,superfamily_Cu_amine_oxidase_N-reg	PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Cu_amine_oxidase_N-reg	-	no_errors
APBB1IP	54518	genome.wustl.edu	37	10	26781288	26781288	+	Missense_Mutation	SNP	G	G	A	rs146489691	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	26781288	26781288	G	A	SNP	APBB1IP	NM_019043.3	human	genbank	58_37c	+1	validated	missense	c.33	p.M11I	1.000	NULL	HMMPfam_RA,HMMSmart_RA,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
ARFGAP1	55738	genome.wustl.edu	37	20	61907987	61907987	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	20	61907987	61907987	C	A	SNP	ARFGAP1	NM_175609.1	human	genbank	58_37c	+1	reviewed	missense	c.326	p.A109D	1.000	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain	-	no_errors
ARHGAP11A	9824	genome.wustl.edu	37	15	32929244	32929244	+	Missense_Mutation	SNP	A	A	G	rs189559276	by1000genomes	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	15	32929244	32929244	A	G	SNP	ARHGAP11A	NM_014783.3	human	genbank	58_37c	+1	validated	missense	c.2270	p.D757G	0.000	NULL	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
ARID4B	51742	genome.wustl.edu	37	1	235345422	235345422	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	235345422	235345422	T	G	SNP	ARID4B	NM_016374.5	human	genbank	58_37c	-1	reviewed	missense	c.2812	p.K938Q	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00333,HMMPfam_RBB1NT	-	no_errors
ATF3	467	genome.wustl.edu	37	1	212791561	212791561	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	212791561	212791561	G	A	SNP	ATF3	NM_001030287.2	human	genbank	58_37c	+1	reviewed	silent	c.333	p.T111	0.349	HMMSmart_SM00338,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_2	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_2	-	no_errors
AUP1	550	genome.wustl.edu	37	2	74756062	74756062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	74756062	74756062	G	A	SNP	AUP1	NM_181575.3	human	genbank	58_37c	-1	reviewed	missense	c.340	p.P114S	1.000	HMMSmart_PlsC	HMMSmart_PlsC,HMMPfam_CUE,HMMSmart_CUE	-	no_errors
BAI2	576	genome.wustl.edu	37	1	32203298	32203298	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	32203298	32203298	C	G	SNP	BAI2	NM_001703.2	human	genbank	58_37c	-1	reviewed	missense	c.2831	p.C944S	1.000	HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008	-	no_errors
C19orf23	148046	genome.wustl.edu	37	19	1269930	1269930	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	19	1269930	1269930	C	G	SNP	C19orf23	ENST00000436371	human	ensembl	58_37c	-1	known	silent	c.210	p.T70	0.000	NULL	NULL	-	no_errors
C5orf4	10826	genome.wustl.edu	37	5	154199668	154199668	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	154199668	154199668	C	G	SNP	C5orf4	ENST00000423554	human	ensembl	58_37c	-1	known	missense	c.429	p.R143S	0.001	NULL	NULL	-	no_errors
CASP2	835	genome.wustl.edu	37	7	142997517	142997517	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	142997517	142997517	A	C	SNP	CASP2	ENST00000392923	human	ensembl	58_37c	+1	known	missense	c.922	p.T308P	1.000	HMMSmart_SM00115	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CAST	831	genome.wustl.edu	37	5	96079350	96079350	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	96079350	96079350	C	T	SNP	CAST	NM_173061.2	human	genbank	58_37c	+1	reviewed	missense	c.20	p.S7L	0.831	NULL	HMMPfam_Calpain_inhib	-	no_errors
CD97	976	genome.wustl.edu	37	19	14508566	14508566	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	19	14508566	14508566	G	A	SNP	CD97	NM_078481.2	human	genbank	58_37c	+1	reviewed	nonsense	c.722	p.W241*	0.957	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CDH26	60437	genome.wustl.edu	37	20	58547126	58547126	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	20	58547126	58547126	G	A	SNP	CDH26	NM_177980.2	human	genbank	58_37c	+1	reviewed	missense	c.341	p.G114E	0.783	HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CELSR3	1951	genome.wustl.edu	37	3	48694701	48694701	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	3	48694701	48694701	C	T	SNP	CELSR3	NM_001407.2	human	genbank	58_37c	-1	reviewed	missense	c.3829	p.V1277M	1.000	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00282,HMMPfam_HRM,HMMSmart_SM00008,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_EGF/Laminin	-	no_errors
CEP72	55722	genome.wustl.edu	37	5	653161	653161	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	653161	653161	C	A	SNP	CEP72	NM_018140.3	human	genbank	58_37c	+1	reviewed	missense	c.1837	p.H613N	0.990	NULL	HMMPfam_LRR_1,HMMSmart_LRRcap,superfamily_SSF52058	-	no_errors
CRMP1	1400	genome.wustl.edu	37	4	5844877	5844877	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	4	5844877	5844877	C	T	SNP	CRMP1	NM_001014809.1	human	genbank	58_37c	-1	reviewed	silent	c.975	p.R325	0.907	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	-	no_errors
DENND1C	79958	genome.wustl.edu	37	19	6476917	6476917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	19	6476917	6476917	G	A	SNP	DENND1C	NM_024898.2	human	genbank	58_37c	-1	validated	missense	c.629	p.A210V	1.000	HMMPfam_DENN,HMMSmart_DENN	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
DNAH6	0	genome.wustl.edu	37	2	84930672	84930672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	84930672	84930672	G	A	SNP	DNAH6	NM_001370.1	human	genbank	58_37c	+1	validated	missense	c.8215	p.E2739K	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH7	56171	genome.wustl.edu	37	2	196765097	196765097	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	196765097	196765097	C	T	SNP	DNAH7	NM_018897.2	human	genbank	58_37c	-1	validated	missense	c.4457	p.R1486H	0.991	superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_ADH_SHORT,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,PatternScan_EF_HAND_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EHHADH	1962	genome.wustl.edu	37	3	184911054	184911054	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	3	184911054	184911054	C	G	SNP	EHHADH	NM_001966.3	human	genbank	58_37c	-1	reviewed	missense	c.1132	p.V378L	1.000	HMMPfam_3HCDH_N,superfamily_NAD(P)-bd	HMMPfam_ECH,HMMPfam_3HCDH,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6DGDH_C_like,superfamily_NAD(P)-bd,PatternScan_ENOYL_COA_HYDRATASE,superfamily_SSF52096	-	no_errors
EML6	0	genome.wustl.edu	37	2	55080895	55080895	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	55080895	55080895	C	G	SNP	EML6	NM_001039753.2	human	genbank	58_37c	+1	validated	missense	c.1560	p.D520E	0.999	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
EMR2	30817	genome.wustl.edu	37	19	14876520	14876520	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	19	14876520	14876520	C	T	SNP	EMR2	NM_013447.2	human	genbank	58_37c	-1	reviewed	nonsense	c.731	p.W244*	0.046	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
EPHB2	2048	genome.wustl.edu	37	1	23236889	23236889	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	23236889	23236889	T	G	SNP	EPHB2	NM_004442.6	human	genbank	58_37c	+1	reviewed	missense	c.2520	p.I840M	0.736	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Gal_bind_like,superfamily_SAM_homology,superfamily_Kinase_like,PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
EPN1	29924	genome.wustl.edu	37	19	56200357	56200357	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	19	56200357	56200357	C	T	SNP	EPN1	NM_001130071.1	human	genbank	58_37c	+1	validated	silent	c.933	p.D311	1.000	HMMSmart_SM00726	HMMPfam_ENTH,HMMPfam_UIM,HMMSmart_SM00726,superfamily_ENTH/VHS domain,HMMSmart_SM00273	-	no_errors
F2R	2149	genome.wustl.edu	37	5	76029028	76029028	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	76029028	76029028	C	G	SNP	F2R	NM_001992.3	human	genbank	58_37c	+1	reviewed	missense	c.978	p.F326L	0.998	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
FAM13B	51306	genome.wustl.edu	37	5	137289955	137289955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	137289955	137289955	G	A	SNP	FAM13B	NM_016603.2	human	genbank	58_37c	-1	validated	missense	c.1552	p.P518S	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
FAM21C	253725	genome.wustl.edu	37	10	46261214	46261214	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	46261214	46261214	T	A	SNP	FAM21C	NM_015262.2	human	genbank	58_37c	+1	validated	missense	c.1825	p.S609T	0.000	NULL	NULL	-	no_errors
FKBP7	51661	genome.wustl.edu	37	2	179343153	179343153	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	179343153	179343153	C	G	SNP	FKBP7	NM_181342.2	human	genbank	58_37c	-1	reviewed	missense	c.74	p.R25T	0.129	NULL	HMMPfam_FKBP_C,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_FKBP-like	-	no_errors
FLG2	388698	genome.wustl.edu	37	1	152329634	152329634	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	152329634	152329634	T	A	SNP	FLG2	NM_001014342.2	human	genbank	58_37c	-1	provisional	nonsense	c.628	p.K210*	0.804	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
FLNC	2318	genome.wustl.edu	37	7	128485245	128485245	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	128485245	128485245	C	T	SNP	FLNC	NM_001458.4	human	genbank	58_37c	+1	reviewed	silent	c.3726	p.V1242	0.927	HMMSmart_SM00557,superfamily_E set domains	HMMSmart_SM00557,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_E set domains,superfamily_Calponin-homology domain CH-domain,HMMPfam_Filamin	-	no_errors
FYTTD1	84248	genome.wustl.edu	37	3	197505308	197505308	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	3	197505308	197505308	G	A	SNP	FYTTD1	NM_032288.6	human	genbank	58_37c	+1	validated	silent	c.831	p.Q277	1.000	HMMPfam_FYTT	HMMPfam_FYTT	-	no_errors
GCLC	2729	genome.wustl.edu	37	6	53373506	53373506	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	6	53373506	53373506	C	G	SNP	GCLC	NM_001498.2	human	genbank	58_37c	-1	reviewed	missense	c.832	p.A278P	1.000	HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase	HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase	-	no_errors
GPR120	338557	genome.wustl.edu	37	10	95326768	95326768	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	95326768	95326768	C	T	SNP	GPR120	NM_181745.2	human	genbank	58_37c	+1	validated	silent	c.291	p.A97	0.168	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GPR81	27198	genome.wustl.edu	37	12	123214320	123214320	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	12	123214320	123214320	G	A	SNP	GPR81	NM_032554.3	human	genbank	58_37c	-1	validated	silent	c.567	p.L189	0.010	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
HAS2	3037	genome.wustl.edu	37	8	122626391	122626391	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	8	122626391	122626391	C	A	SNP	HAS2	NM_005328.2	human	genbank	58_37c	-1	reviewed	missense	c.1617	p.R539S	1.000	NULL	HMMPfam_Glycos_transf_2,superfamily_SSF53448	-	no_errors
HEATR5A	25938	genome.wustl.edu	37	14	31774324	31774324	+	Missense_Mutation	SNP	C	C	T	rs61754158	byCluster;byFrequency;by1000genomes	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	14	31774324	31774324	C	T	SNP	HEATR5A	NM_015473.2	human	genbank	58_37c	-1	validated	missense	c.4147	p.G1383R	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
IGKV3D-20	0	genome.wustl.edu	37	2	90078144	90078144	+	Missense_Mutation	SNP	C	C	A	rs72490097	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	90078144	90078144	C	A	SNP	IGKV3D-20	ENST00000390270	human	ensembl	58_37c	+1	known	missense	c.181	p.P61T	0.985	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
IL22RA1	58985	genome.wustl.edu	37	1	24448186	24448186	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	24448186	24448186	G	C	SNP	IL22RA1	NM_021258.2	human	genbank	58_37c	-1	reviewed	missense	c.834	p.I278M	1.000	NULL	superfamily_FN_III-like,HMMPfam_IL10Ra-bind	-	no_errors
KIAA0564	23078	genome.wustl.edu	37	13	42263507	42263509	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	13	42263507	42263509	CAA	-	DEL	KIAA0564	NM_015058.1	human	genbank	58_37c	-1	validated	in_frame_del	c.4114_4112	p.V1371in_frame_del	1.000:1.000:1.000	NULL	HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like	-	no_errors
KIAA1217	56243	genome.wustl.edu	37	10	24722118	24722122	+	Frame_Shift_Del	DEL	GTAAG	GTAAG	-	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	GTAAG	GTAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	24722118	24722122	GTAAG	-	DEL	KIAA1217	NM_019590.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.748_752	p.V250fs	1.000:1.000:0.613:0.997:1.000	NULL	NULL	-	no_errors
KIF3B	9371	genome.wustl.edu	37	20	30904100	30904100	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	20	30904100	30904100	A	T	SNP	KIF3B	NM_004798.2	human	genbank	58_37c	+1	reviewed	missense	c.1484	p.K495I	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLHDC4	54758	genome.wustl.edu	37	16	87742952	87742952	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	16	87742952	87742952	G	A	SNP	KLHDC4	NM_017566.3	human	genbank	58_37c	-1	validated	missense	c.1366	p.R456C	1.000	HMMPfam_Kelch_1	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
LNP1	348801	genome.wustl.edu	37	3	100170641	100170641	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	3	100170641	100170641	C	T	SNP	LNP1	NM_001085451.1	human	genbank	58_37c	+1	validated	missense	c.235	p.R79C	0.000	NULL	NULL	-	no_errors
LOC643677	643677	genome.wustl.edu	37	13	103384955	103384955	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	13	103384955	103384955	C	A	SNP	LOC643677	XM_002344085.1	human	genbank	58_37c	-1	model	missense	c.17636	p.S5879I	0.000	NULL	NULL	-	no_errors
LRRC8C	84230	genome.wustl.edu	37	1	90152042	90152042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	90152042	90152042	G	A	SNP	LRRC8C	NM_032270.4	human	genbank	58_37c	+1	validated	missense	c.10	p.V4M	0.999	NULL	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
MACF1	23499	genome.wustl.edu	37	1	39799297	39799297	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	39799297	39799297	C	T	SNP	MACF1	NM_033044.2	human	genbank	58_37c	+1	reviewed	missense	c.2357	p.T786I	1.000	HMMSmart_PLEC,superfamily_SSF75399	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
MAK16	84549	genome.wustl.edu	37	8	33354179	33354179	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	8	33354179	33354179	G	C	SNP	MAK16	NM_032509.3	human	genbank	58_37c	+1	validated	missense	c.559	p.D187H	1.000	HMMPfam_Mak16	HMMPfam_Mak16	-	no_errors
MMP13	4322	genome.wustl.edu	37	11	102826194	102826194	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	11	102826194	102826194	G	C	SNP	MMP13	NM_002427.3	human	genbank	58_37c	-1	reviewed	missense	c.149	p.T50R	0.000	HMMPfam_PG_binding_1,superfamily_PGBD_like	superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486	-	no_errors
MYO10	4651	genome.wustl.edu	37	5	16680064	16680073	+	Frame_Shift_Del	DEL	CTTGAATCAG	CTTGAATCAG	-	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	CTTGAATCAG	CTTGAATCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	16680064	16680073	CTTGAATCAG	-	DEL	MYO10	NM_012334.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.4534_4525	p.L1509fs	1.000:0.992:0.998:1.000:0.997:1.000:1.000:1.000:1.000:1.000	superfamily_SSF50729	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
NGEF	25791	genome.wustl.edu	37	2	233785249	233785249	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	233785249	233785249	G	A	SNP	NGEF	NM_019850.2	human	genbank	58_37c	-1	validated	silent	c.573	p.I191	0.850	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
NMUR2	56923	genome.wustl.edu	37	5	151784051	151784051	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	5	151784051	151784051	C	A	SNP	NMUR2	NM_020167.4	human	genbank	58_37c	-1	reviewed	missense	c.624	p.K208N	0.963	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
NOS2	4843	genome.wustl.edu	37	17	26101297	26101297	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	17	26101297	26101297	A	C	SNP	NOS2	NM_000625.4	human	genbank	58_37c	-1	reviewed	missense	c.1462	p.F488V	1.000	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain	HMMPfam_NAD_binding_1,HMMPfam_FAD_binding_1,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
NR1D1	9572	genome.wustl.edu	37	17	38252225	38252225	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	17	38252225	38252225	T	A	SNP	NR1D1	NM_021724.2	human	genbank	58_37c	-1	provisional	silent	c.720	p.S240	0.913	NULL	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
NUPL2	11097	genome.wustl.edu	37	7	23239963	23239963	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	23239963	23239963	G	C	SNP	NUPL2	NM_007342.2	human	genbank	58_37c	+1	validated	missense	c.871	p.G291R	0.999	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors
OR52D1	390066	genome.wustl.edu	37	11	5510400	5510400	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	11	5510400	5510400	G	C	SNP	OR52D1	NM_001005163.2	human	genbank	58_37c	+1	validated	missense	c.464	p.S155T	0.001	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5T3	390154	genome.wustl.edu	37	11	56020650	56020650	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	11	56020650	56020650	A	G	SNP	OR5T3	NM_001004747.1	human	genbank	58_37c	+1	provisional	silent	c.975	p.K325	0.749	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OVCH2	341277	genome.wustl.edu	37	11	7723282	7723282	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	11	7723282	7723282	G	C	SNP	OVCH2	NM_198185.2	human	genbank	58_37c	-1	validated	silent	c.540	p.G180	1.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PAXIP1	22976	genome.wustl.edu	37	7	154760837	154760837	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	154760837	154760837	C	T	SNP	PAXIP1	NM_007349.3	human	genbank	58_37c	-1	reviewed	splice_site	c.1075-1	e7-1	1.000	-	-	-	no_errors
PCBP2	5094	genome.wustl.edu	37	12	53853067	53853067	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	12	53853067	53853067	C	G	SNP	PCBP2	NM_005016.5	human	genbank	58_37c	+1	reviewed	missense	c.255	p.S85R	1.000	NULL	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	-	no_errors
PCDH19	57526	genome.wustl.edu	37	X	99551448	99551448	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	X	99551448	99551448	G	T	SNP	PCDH19	NM_001105243.1	human	genbank	58_37c	-1	reviewed	missense	c.3133	p.R1045S	0.979	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PHF14	9678	genome.wustl.edu	37	7	11022150	11022150	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	11022150	11022150	A	G	SNP	PHF14	ENST00000303905	human	ensembl	58_37c	+1	known	silent	c.264	p.E88	0.857	NULL	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
PIPSL	266971	genome.wustl.edu	37	10	95719726	95719726	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	95719726	95719726	A	C	SNP	PIPSL	NR_002319.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.742	-	-	-	pseudogene
PLCD1	5333	genome.wustl.edu	37	3	38049030	38049030	+	RNA	DEL	G	G	-	rs57208122	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	3	38049030	38049030	G	-	DEL	PLCD1	NR_024071.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
PLEC	0	genome.wustl.edu	37	8	144995865	144995865	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	8	144995865	144995865	C	G	SNP	PLEC	NM_201380.2	human	genbank	58_37c	-1	reviewed	missense	c.8535	p.E2845D	1.000	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
POLE3	54107	genome.wustl.edu	37	9	116171999	116172001	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	9	116171999	116172001	GTT	-	DEL	POLE3	NM_017443.4	human	genbank	58_37c	-1	validated	in_frame_del	c.162_160	p.N54in_frame_del	1.000:1.000:1.000	HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold	HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold	-	no_errors
PPA1	5464	genome.wustl.edu	37	10	71978538	71978538	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	71978538	71978538	C	A	SNP	PPA1	NM_021129.3	human	genbank	58_37c	-1	reviewed	missense	c.159	p.W53C	1.000	HMMPfam_Pyrophosphatase,superfamily_Pyrophosphatase	HMMPfam_Pyrophosphatase,PatternScan_PPASE,superfamily_Pyrophosphatase	-	no_errors
PRDM8	56978	genome.wustl.edu	37	4	81122507	81122508	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	4	81122507	81122508	GC	-	DEL	PRDM8	NM_001099403.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.283_284	p.A95fs	1.000:1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,PatternScan_TUBULIN,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PRF1	5551	genome.wustl.edu	37	10	72357869	72357869	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	72357869	72357869	G	A	SNP	PRF1	NM_001083116.1	human	genbank	58_37c	-1	reviewed	silent	c.1608	p.D536	0.266	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_MACPF,HMMSmart_SM00457,PatternScan_MAC_PERFORIN,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
PRKDC	5591	genome.wustl.edu	37	8	48730110	48730110	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	8	48730110	48730110	G	C	SNP	PRKDC	ENST00000314191	human	ensembl	58_37c	-1	known	missense	c.9455	p.S3152C	1.000	HMMPfam_FAT	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PTPLAD1	51495	genome.wustl.edu	37	15	65851018	65851020	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	15	65851018	65851020	GAA	-	DEL	PTPLAD1	NM_016395.2	human	genbank	58_37c	+1	validated	in_frame_del	c.370_372	p.E126in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_PTPLA,superfamily_HSP20_chap,HMMPfam_CS	-	no_errors
PTPRB	5787	genome.wustl.edu	37	12	70974955	70974955	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	12	70974955	70974955	G	C	SNP	PTPRB	NM_001109754.1	human	genbank	58_37c	-1	reviewed	silent	c.2439	p.V813	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Ricin_B_lectin,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Ricin B-like lectins,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RANBP3	8498	genome.wustl.edu	37	19	5917815	5917815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	19	5917815	5917815	G	A	SNP	RANBP3	NM_007322.2	human	genbank	58_37c	-1	reviewed	silent	c.1650	p.A550	0.004	NULL	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like	-	no_errors
RARG	5916	genome.wustl.edu	37	12	53609502	53609502	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	12	53609502	53609502	G	C	SNP	RARG	NM_000966.4	human	genbank	58_37c	-1	validated	nonsense	c.261	p.Y87*	1.000	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
RASA3	22821	genome.wustl.edu	37	13	114773080	114773080	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	13	114773080	114773080	G	C	SNP	RASA3	NM_007368.2	human	genbank	58_37c	-1	reviewed	missense	c.1671	p.F557L	0.997	HMMSmart_RasGAP,superfamily_Rho_GAP	HMMPfam_C2,HMMSmart_C2,HMMPfam_BTK,HMMSmart_BTK,HMMPfam_PH,HMMSmart_PH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_C2_CaLB,superfamily_SSF50729	-	no_errors
RASL11B	65997	genome.wustl.edu	37	4	53731906	53731906	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	4	53731906	53731906	G	C	SNP	RASL11B	NM_023940.2	human	genbank	58_37c	+1	provisional	missense	c.681	p.M227I	1.000	NULL	HMMPfam_Miro,superfamily_SSF52540	-	no_errors
RASSF7	8045	genome.wustl.edu	37	11	561784	561784	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	11	561784	561784	G	C	SNP	RASSF7	NM_003475.3	human	genbank	58_37c	+1	validated	missense	c.16	p.A6P	0.000	HMMPfam_RA,HMMSmart_SM00314	HMMPfam_RA,HMMSmart_SM00314	-	no_errors
RBM33	155435	genome.wustl.edu	37	7	155473489	155473489	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	155473489	155473489	G	A	SNP	RBM33	NM_053043.2	human	genbank	58_37c	+1	validated	missense	c.454	p.E152K	0.041	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RGS17	26575	genome.wustl.edu	37	6	153345454	153345454	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	6	153345454	153345454	A	-	DEL	RGS17	NM_012419.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.387	p.I129fs	0.949	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam	-	no_errors
RGS7	6000	genome.wustl.edu	37	1	240966282	240966282	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	240966282	240966282	G	C	SNP	RGS7	NM_002924.4	human	genbank	58_37c	-1	validated	nonsense	c.1281	p.Y427*	1.000	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam	HMMPfam_RGS,HMMSmart_RGS,HMMPfam_DEP,HMMSmart_DEP,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF46785	-	no_errors
RPS6KA2	6196	genome.wustl.edu	37	6	166918092	166918092	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	6	166918092	166918092	G	C	SNP	RPS6KA2	NM_001006932.1	human	genbank	58_37c	-1	reviewed	missense	c.492	p.F164L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RUNDC3B	154661	genome.wustl.edu	37	7	87258230	87258230	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	87258230	87258230	G	T	SNP	RUNDC3B	NM_138290.2	human	genbank	58_37c	+1	validated	missense	c.91	p.V31L	1.000	NULL	HMMPfam_RUN,HMMSmart_SM00593	-	no_errors
SDK1	221935	genome.wustl.edu	37	7	4273040	4273040	+	Missense_Mutation	SNP	C	C	T	rs147295784	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	4273040	4273040	C	T	SNP	SDK1	NM_152744.3	human	genbank	58_37c	+1	validated	missense	c.5981	p.T1994M	0.000	superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SGSH	6448	genome.wustl.edu	37	17	78188424	78188424	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	17	78188424	78188424	G	C	SNP	SGSH	NM_000199.3	human	genbank	58_37c	-1	reviewed	missense	c.496	p.Q166E	0.962	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core	-	no_errors
SHROOM2	357	genome.wustl.edu	37	X	9864381	9864381	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	X	9864381	9864381	G	C	SNP	SHROOM2	NM_001649.2	human	genbank	58_37c	+1	reviewed	missense	c.2433	p.R811S	0.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SIAH1	6477	genome.wustl.edu	37	16	48396330	48396330	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	16	48396330	48396330	G	A	SNP	SIAH1	NM_001006610.1	human	genbank	58_37c	-1	reviewed	nonsense	c.103	p.Q35*	1.000	NULL	HMMSmart_RING,superfamily_Traf_like,HMMPfam_Sina,superfamily_SSF57850	-	no_errors
SLC23A3	151295	genome.wustl.edu	37	2	220032945	220032945	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	2	220032945	220032945	G	C	SNP	SLC23A3	NM_001144890.1	human	genbank	58_37c	-1	validated	missense	c.794	p.T265S	0.001	HMMPfam_Xan_ur_permease	HMMPfam_Xan_ur_permease	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16261459	16261459	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	16261459	16261459	C	T	SNP	SPEN	NM_015001.2	human	genbank	58_37c	+1	reviewed	silent	c.8724	p.S2908	0.049	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
STARD9	57519	genome.wustl.edu	37	15	42976692	42976692	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	15	42976692	42976692	C	T	SNP	STARD9	XM_001129482.3	human	genbank	58_37c	+1	model	silent	c.2772	p.T924	0.004	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Bet v1-like	-	no_errors
STX6	10228	genome.wustl.edu	37	1	180959152	180959152	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	180959152	180959152	G	C	SNP	STX6	NM_005819.4	human	genbank	58_37c	-1	validated	missense	c.457	p.H153D	1.000	NULL	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N	-	no_errors
SYNC	81493	genome.wustl.edu	37	1	33160479	33160479	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	33160479	33160479	A	G	SNP	SYNC	NM_030786.2	human	genbank	58_37c	-1	reviewed	missense	c.1220	p.V407A	1.000	NULL	NULL	-	no_errors
TMEM220	388335	genome.wustl.edu	37	17	10632347	10632347	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	17	10632347	10632347	C	A	SNP	TMEM220	NM_001004313.1	human	genbank	58_37c	-1	provisional	splice_site	c.102+1	e2+1	1.000	-	-	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578188	7578188	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	17	7578188	7578188	C	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.661	p.E221*	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRPM3	80036	genome.wustl.edu	37	9	73399144	73399144	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	9	73399144	73399144	T	C	SNP	TRPM3	NM_001007471.2	human	genbank	58_37c	-1	reviewed	missense	c.1025	p.N342S	0.997	NULL	HMMPfam_Ion_trans	-	no_errors
TSGA13	114960	genome.wustl.edu	37	7	130357607	130357607	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	130357607	130357607	T	A	SNP	TSGA13	NM_052933.2	human	genbank	58_37c	-1	provisional	missense	c.497	p.D166V	0.000	NULL	NULL	-	no_errors
TTF2	8458	genome.wustl.edu	37	1	117620594	117620594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	1	117620594	117620594	G	A	SNP	TTF2	NM_003594.3	human	genbank	58_37c	+1	reviewed	missense	c.1630	p.G544S	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_zf-GRF,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TUBB	203068	genome.wustl.edu	37	6	30691194	30691194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	6	30691194	30691194	G	A	SNP	TUBB	NM_178014.2	human	genbank	58_37c	+1	provisional	missense	c.355	p.V119M	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
UBE3C	9690	genome.wustl.edu	37	7	157046809	157046809	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	7	157046809	157046809	C	G	SNP	UBE3C	NM_014671.2	human	genbank	58_37c	+1	validated	silent	c.2856	p.L952	0.993	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	-	no_errors
UMODL1	89766	genome.wustl.edu	37	21	43542941	43542941	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	21	43542941	43542941	G	T	SNP	UMODL1	NM_173568.3	human	genbank	58_37c	+1	validated	missense	c.3212	p.G1071V	0.979	NULL	HMMPfam_SEA,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMSmart_SM00179,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like,superfamily_Fibronectin type III,HMMPfam_EMI,HMMPfam_EGF_CA,PatternScan_4_DISULFIDE_CORE,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
USPL1	10208	genome.wustl.edu	37	13	31205414	31205414	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	13	31205414	31205414	C	A	SNP	USPL1	NM_005800.4	human	genbank	58_37c	+1	validated	missense	c.671	p.A224D	0.018	NULL	NULL	-	no_errors
VPS13A	23230	genome.wustl.edu	37	9	79890418	79890418	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	9	79890418	79890418	A	G	SNP	VPS13A	NM_033305.2	human	genbank	58_37c	+1	reviewed	silent	c.2517	p.S839	0.986	NULL	HMMPfam_DUF1162	-	no_errors
WDFY4	0	genome.wustl.edu	37	10	49939380	49939380	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	10	49939380	49939380	T	C	SNP	WDFY4	NM_020945.1	human	genbank	58_37c	+1	validated	missense	c.1355	p.L452P	1.000	superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
ZNF615	284370	genome.wustl.edu	37	19	52497053	52497053	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	19	52497053	52497053	T	A	SNP	ZNF615	NM_198480.2	human	genbank	58_37c	-1	provisional	nonsense	c.1276	p.K426*	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF79	7633	genome.wustl.edu	37	9	130207444	130207444	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13D-01A-13D-A12Q-09	TCGA-A7-A13D-10A-02D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	418e916b-7a4e-4fab-8616-15dcec4d79f8	dbc462f5-f723-4cf7-a48d-84001d2d51e9	9	130207444	130207444	G	C	SNP	ZNF79	NM_007135.2	human	genbank	58_37c	+1	validated	missense	c.1465	p.V489L	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
