Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACSBG2	81616	genome.wustl.edu	37	19	6147661	6147661	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	6147661	6147661	G	A	SNP	ACSBG2	NM_030924.3	human	genbank	58_37c	+1	validated	missense	c.272	p.R91Q	1.000	HMMPfam_AMP-binding,superfamily_SSF56801	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
AKD1	221264	genome.wustl.edu	37	6	109815203	109815203	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	6	109815203	109815203	A	-	DEL	AKD1	ENST00000424296	human	ensembl	58_37c	-1	known	frame_shift_del	c.2751	p.Y917fs	0.078	NULL	HMMPfam_ADK,HMMPfam_YHS,superfamily_SSF52540	-	no_errors
ANK2	287	genome.wustl.edu	37	4	114277716	114277716	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	4	114277716	114277716	G	C	SNP	ANK2	NM_001148.4	human	genbank	58_37c	+1	reviewed	missense	c.7942	p.G2648R	0.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
ATP11A	23250	genome.wustl.edu	37	13	113516786	113516786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	13	113516786	113516786	G	A	SNP	ATP11A	NM_032189.3	human	genbank	58_37c	+1	reviewed	missense	c.2888	p.R963H	0.998	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BTF3L4	91408	genome.wustl.edu	37	1	52530605	52530605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	52530605	52530605	G	A	SNP	BTF3L4	NM_152265.3	human	genbank	58_37c	+1	validated	missense	c.163	p.E55K	1.000	HMMPfam_NAC	HMMPfam_NAC	-	no_errors
C7orf28A	51622	genome.wustl.edu	37	7	5942373	5942373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	7	5942373	5942373	C	T	SNP	C7orf28A	NM_015622.5	human	genbank	58_37c	+1	validated	missense	c.520	p.R174W	1.000	HMMPfam_DUF2049	HMMPfam_DUF2049	-	no_errors
CADPS2	93664	genome.wustl.edu	37	7	122269330	122269330	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	7	122269330	122269330	C	G	SNP	CADPS2	NM_017954.10	human	genbank	58_37c	-1	reviewed	missense	c.839	p.R280P	0.999	NULL	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors
CASC5	57082	genome.wustl.edu	37	15	40917599	40917599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	15	40917599	40917599	G	A	SNP	CASC5	NM_170589.3	human	genbank	58_37c	+1	validated	missense	c.5215	p.E1739K	1.000	NULL	NULL	-	no_errors
CCDC33	80125	genome.wustl.edu	37	15	74628287	74628287	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	15	74628287	74628287	G	A	SNP	CCDC33	NM_025055.3	human	genbank	58_37c	+1	validated	missense	c.2161	p.D721N	0.091	NULL	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CDH9	1007	genome.wustl.edu	37	5	26881732	26881732	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	26881732	26881732	A	T	SNP	CDH9	NM_016279.3	human	genbank	58_37c	-1	reviewed	missense	c.1883	p.I628N	1.000	NULL	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CHSY3	337876	genome.wustl.edu	37	5	129243939	129243939	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	129243939	129243939	G	T	SNP	CHSY3	NM_175856.4	human	genbank	58_37c	+1	validated	missense	c.972	p.R324S	1.000	NULL	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
CLEC16A	23274	genome.wustl.edu	37	16	11154764	11154764	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	11154764	11154764	C	T	SNP	CLEC16A	NM_015226.2	human	genbank	58_37c	+1	validated	silent	c.2001	p.I667	1.000	NULL	PatternScan_C_TYPE_LECTIN_1,HMMPfam_FPL	-	no_errors
CLEC19A	0	genome.wustl.edu	37	16	19310039	19310039	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	19310039	19310039	A	G	SNP	LOC728276	NR_024436.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	1.000	-	-	-	no_errors
CLN3	1201	genome.wustl.edu	37	16	28493476	28493476	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	28493476	28493476	A	G	SNP	CLN3	NM_000086.2	human	genbank	58_37c	-1	reviewed	missense	c.1006	p.S336P	1.000	HMMPfam_CLN3,superfamily_MFS general substrate transporter	HMMPfam_CLN3,superfamily_MFS general substrate transporter	-	no_errors
COL3A1	1281	genome.wustl.edu	37	2	189870102	189870102	+	Silent	SNP	C	C	T	rs41264441	byCluster	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	2	189870102	189870102	C	T	SNP	COL3A1	NM_000090.3	human	genbank	58_37c	+1	reviewed	silent	c.2958	p.N986	0.669	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen	-	no_errors
CRNN	49860	genome.wustl.edu	37	1	152382287	152382287	+	Missense_Mutation	SNP	C	C	T	rs150002541	by1000genomes	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	152382287	152382287	C	T	SNP	CRNN	NM_016190.2	human	genbank	58_37c	-1	reviewed	missense	c.1271	p.R424H	0.001	NULL	HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
CRTAC1	55118	genome.wustl.edu	37	10	99677378	99677378	+	Silent	SNP	G	G	A	rs145011978	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	10	99677378	99677378	G	A	SNP	CRTAC1	NM_018058.4	human	genbank	58_37c	-1	validated	silent	c.594	p.Y198	0.907	superfamily_Integrin alpha N-terminal domain	HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain	-	no_errors
DAPK1	1612	genome.wustl.edu	37	9	90256921	90256921	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	9	90256921	90256921	C	G	SNP	DAPK1	NM_004938.2	human	genbank	58_37c	+1	reviewed	nonsense	c.866	p.S289*	0.997	superfamily_Kinase_like	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_DEATH_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540	-	no_errors
DLGAP3	58512	genome.wustl.edu	37	1	35332720	35332720	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	35332720	35332720	C	T	SNP	DLGAP3	NM_001080418.1	human	genbank	58_37c	-1	provisional	missense	c.2650	p.E884K	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
DNAH3	55567	genome.wustl.edu	37	16	21156695	21156695	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	21156695	21156695	C	A	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	missense	c.255	p.L85F	0.997	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DOT1L	84444	genome.wustl.edu	37	19	2185865	2185865	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	2185865	2185865	A	G	SNP	DOT1L	NM_032482.2	human	genbank	58_37c	+1	validated	missense	c.137	p.E46G	1.000	superfamily_SSF53335	HMMPfam_DOT1,HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF53335	-	no_errors
DSG3	1830	genome.wustl.edu	37	18	29054365	29054365	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	18	29054365	29054365	C	T	SNP	DSG3	NM_001944.2	human	genbank	58_37c	+1	reviewed	nonsense	c.2383	p.Q795*	1.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
DYNC2H1	79659	genome.wustl.edu	37	11	103270428	103270429	+	Frame_Shift_Ins	INS	-	-	CGAT	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	11	103270428	103270429	-	CGAT	INS	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.12215_12216	p.Q4075fs	0.961:0.957	HMMPfam_Dynein_heavy	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000205141	0	genome.wustl.edu	37	15	99799775	99799775	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	15	99799775	99799775	C	T	SNP	HSP90B2P	ENST00000378906	human	ensembl	58_37c	+1	known	silent	c.873	p.Y291	0.999	HMMPfam_HSP90,superfamily_SSF110942	PatternScan_ER_TARGET,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90,superfamily_SSF110942	-	no_errors
ENSG00000246238	0	genome.wustl.edu	37	4	435326	435326	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	4	435326	435326	T	C	SNP	ZNF721	NM_133474.2	human	genbank	58_37c	-1	validated	3_prime_untranslated_region	c.*158	NULL	0.028	-	-	-	no_errors
ERBB2IP	55914	genome.wustl.edu	37	5	65370887	65370887	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	65370887	65370887	C	G	SNP	ERBB2IP	NM_018695.2	human	genbank	58_37c	+1	reviewed	silent	c.3669	p.L1223	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
ESAM	90952	genome.wustl.edu	37	11	124628269	124628269	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	11	124628269	124628269	G	A	SNP	ESAM	NM_138961.2	human	genbank	58_37c	-1	validated	silent	c.225	p.F75	0.065	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
FAM13B	51306	genome.wustl.edu	37	5	137354686	137354686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	137354686	137354686	G	A	SNP	FAM13B	NM_016603.2	human	genbank	58_37c	-1	validated	missense	c.115	p.P39S	1.000	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
FAM55A	120400	genome.wustl.edu	37	11	114393794	114393794	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	11	114393794	114393794	C	A	SNP	FAM55A	NM_152315.2	human	genbank	58_37c	-1	validated	missense	c.489	p.E163D	0.881	NULL	NULL	-	no_errors
FGFR2	2263	genome.wustl.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	rs121913476	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	10	123258034	123258034	A	T	SNP	FGFR2	NM_022970.3	human	genbank	58_37c	-1	reviewed	missense	c.1650	p.N550K	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
GBF1	8729	genome.wustl.edu	37	10	104135342	104135342	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	10	104135342	104135342	G	A	SNP	GBF1	NM_004193.1	human	genbank	58_37c	+1	provisional	splice_site	c.3883+1	e29+1	1.000	-	-	-	no_errors
GLIPR1L2	144321	genome.wustl.edu	37	12	75816731	75816731	+	Missense_Mutation	SNP	G	G	A	rs144813686	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	75816731	75816731	G	A	SNP	GLIPR1L2	NM_152436.1	human	genbank	58_37c	+1	provisional	missense	c.632	p.R211Q	0.001	NULL	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular	-	no_errors
GRIK3	2899	genome.wustl.edu	37	1	37307537	37307537	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	37307537	37307537	C	A	SNP	GRIK3	NM_000831.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1330	p.E444*	1.000	HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620	-	no_errors
HLA-DRB1	3123	genome.wustl.edu	37	6	32552156	32552156	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	6	32552156	32552156	C	T	SNP	HLA-DRB1	NM_002124.2	human	genbank	58_37c	-1	reviewed	splice_site	c.101-1	e2-1	0.636	-	-	-	no_errors
IGF2BP2	10644	genome.wustl.edu	37	3	185367245	185367245	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	185367245	185367245	A	C	SNP	IGF2BP2	NM_006548.4	human	genbank	58_37c	-1	reviewed	missense	c.1539	p.H513Q	1.000	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),superfamily_RNA-binding domain RBD	-	no_errors
KIAA0831	22863	genome.wustl.edu	37	14	55836555	55836555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	14	55836555	55836555	C	T	SNP	KIAA0831	NM_014924.3	human	genbank	58_37c	-1	provisional	missense	c.1261	p.D421N	1.000	NULL	HMMPfam_DUF2355	-	no_errors
KLHL1	57626	genome.wustl.edu	37	13	70681654	70681654	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	13	70681654	70681654	G	C	SNP	KLHL1	NM_020866.2	human	genbank	58_37c	-1	validated	missense	c.178	p.Q60E	1.000	NULL	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KLK2	3817	genome.wustl.edu	37	19	51379763	51379763	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	51379763	51379763	T	C	SNP	KLK2	NM_005551.3	human	genbank	58_37c	+1	validated	missense	c.242	p.F81S	0.001	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
KRT2	3849	genome.wustl.edu	37	12	53041976	53041976	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	53041976	53041976	T	A	SNP	KRT2	NM_000423.2	human	genbank	58_37c	-1	reviewed	missense	c.1103	p.E368V	0.940	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LILRA5	353514	genome.wustl.edu	37	19	54818710	54818710	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	54818710	54818710	T	C	SNP	LILRA5	NM_021250.2	human	genbank	58_37c	-1	reviewed	silent	c.888	p.A296	0.002	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LIPE	3991	genome.wustl.edu	37	19	42906899	42906899	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	42906899	42906899	C	T	SNP	LIPE	NM_005357.2	human	genbank	58_37c	-1	reviewed	missense	c.2827	p.E943K	0.000	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases	PatternScan_LIPASE_GDXG_HIS,PatternScan_LIPASE_GDXG_SER,HMMPfam_HSL_N,HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases	-	no_errors
LOC100288919	0	genome.wustl.edu	37	15	22319166	22319166	+	Missense_Mutation	SNP	G	G	T	rs1429505	byCluster;byFrequency;by2Hit2Allele;bySubmitter	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	15	22319166	22319166	G	T	SNP	LOC100288919	XM_002344245.1	human	genbank	58_37c	-1	model	missense	c.449	p.T150N	0.005	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
MPDZ	8777	genome.wustl.edu	37	9	13175790	13175790	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	9	13175790	13175790	C	G	SNP	MPDZ	NM_003829.3	human	genbank	58_37c	-1	validated	missense	c.3016	p.E1006Q	1.000	superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain	-	no_errors
MPDZ	8777	genome.wustl.edu	37	9	13176329	13176329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	9	13176329	13176329	C	T	SNP	MPDZ	NM_003829.3	human	genbank	58_37c	-1	validated	missense	c.2737	p.D913N	0.021	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain	-	no_errors
MYT1	4661	genome.wustl.edu	37	20	62871685	62871685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	20	62871685	62871685	G	A	SNP	MYT1	NM_004535.2	human	genbank	58_37c	+1	reviewed	missense	c.3250	p.E1084K	1.000	NULL	HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_SSF103637	-	no_errors
NCK1	4690	genome.wustl.edu	37	3	136667105	136667105	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	136667105	136667105	A	G	SNP	NCK1	NM_006153.3	human	genbank	58_37c	+1	reviewed	missense	c.944	p.N315S	1.000	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_SSF55550	-	no_errors
OR52B2	255725	genome.wustl.edu	37	11	6190763	6190763	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	11	6190763	6190763	T	G	SNP	OR52B2	NM_001004052.1	human	genbank	58_37c	-1	provisional	missense	c.794	p.H265P	0.013	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PAPPA2	60676	genome.wustl.edu	37	1	176738882	176738882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	1	176738882	176738882	G	A	SNP	PAPPA2	NM_020318.2	human	genbank	58_37c	+1	validated	missense	c.4463	p.R1488H	1.000	HMMSmart_SM00032,superfamily_Complement control module/SCR domain	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,PatternScan_N6_MTASE,PatternScan_ZINC_PROTEASE,HMMSmart_SM00560,HMMPfam_Peptidase_M43,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Complement control module/SCR domain,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
PCDHA13	56136	genome.wustl.edu	37	5	140262514	140262514	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	140262514	140262514	G	A	SNP	PCDHA13	NM_018904.2	human	genbank	58_37c	+1	reviewed	missense	c.661	p.E221K	0.008	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDE3A	5139	genome.wustl.edu	37	12	20766493	20766493	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	20766493	20766493	C	T	SNP	PDE3A	NM_000921.3	human	genbank	58_37c	+1	validated	silent	c.1128	p.A376	0.083	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,superfamily_SSF109604	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PTPN4	5775	genome.wustl.edu	37	2	120718455	120718455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	2	120718455	120718455	G	A	SNP	PTPN4	NM_002830.2	human	genbank	58_37c	+1	reviewed	missense	c.2206	p.D736N	1.000	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_FA,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
SALL1	6299	genome.wustl.edu	37	16	51171179	51171179	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	16	51171179	51171179	T	A	SNP	SALL1	NM_002968.2	human	genbank	58_37c	-1	reviewed	silent	c.3819	p.S1273	0.998	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SHROOM4	57477	genome.wustl.edu	37	X	50339363	50339363	+	RNA	SNP	T	C	C	rs28362303	byCluster;byFrequency;by1000genomes	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	X	50339363	50339363	T	C	SNP	SHROOM4	NR_027121.1	human	genbank	58_37c	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors
SLC9A2	6549	genome.wustl.edu	37	2	103300701	103300701	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	2	103300701	103300701	C	T	SNP	SLC9A2	NM_003048.3	human	genbank	58_37c	+1	validated	missense	c.1331	p.A444V	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
SLC9A9	285195	genome.wustl.edu	37	3	142985726	142985726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	3	142985726	142985726	C	T	SNP	SLC9A9	NM_173653.3	human	genbank	58_37c	-1	reviewed	missense	c.1756	p.E586K	0.967	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
SPO11	23626	genome.wustl.edu	37	20	55908329	55908329	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	20	55908329	55908329	T	C	SNP	SPO11	NM_012444.2	human	genbank	58_37c	+1	reviewed	missense	c.331	p.F111L	0.995	superfamily_DNA topoisomerase IV alpha subunit,HMMPfam_TP6A_N	superfamily_DNA topoisomerase IV alpha subunit,HMMPfam_SPO11_like,HMMPfam_TP6A_N	-	no_errors
SSH1	54434	genome.wustl.edu	37	12	109186215	109186215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	109186215	109186215	C	T	SNP	SSH1	NM_018984.3	human	genbank	58_37c	-1	validated	silent	c.1740	p.R580	0.000	NULL	HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_DEK C-terminal domain,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SSX7	280658	genome.wustl.edu	37	X	52677374	52677374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	X	52677374	52677374	C	T	SNP	SSX7	NM_173358.2	human	genbank	58_37c	-1	reviewed	missense	c.403	p.D135N	0.000	NULL	HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_SSXRD	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115120672	115120672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	115120672	115120672	G	A	SNP	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	missense	c.334	p.L112F	1.000	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_1	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TCF20	6942	genome.wustl.edu	37	22	42607000	42607000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	22	42607000	42607000	G	A	SNP	TCF20	NM_005650.1	human	genbank	58_37c	-1	reviewed	missense	c.4312	p.R1438C	1.000	NULL	HMMSmart_SM00249	-	no_errors
TCOF1	6949	genome.wustl.edu	37	5	149777996	149777996	+	Silent	SNP	G	G	A	rs3208538	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	5	149777996	149777996	G	A	SNP	TCOF1	NM_001135243.1	human	genbank	58_37c	+1	reviewed	silent	c.4422	p.Q1474	0.998	NULL	HMMPfam_Treacle,HMMSmart_SM00667	-	no_errors
TECRL	253017	genome.wustl.edu	37	4	65180391	65180391	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	4	65180391	65180391	T	A	SNP	TECRL	NM_001010874.4	human	genbank	58_37c	-1	validated	nonsense	c.526	p.R176*	0.030	NULL	HMMPfam_Steroid_dh	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578175	7578176	+	Frame_Shift_Ins	INS	-	-	CCTC	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	17	7578175	7578176	-	CCTC	INS	TP53	ENST00000414315	human	ensembl	58_37c	-1	known	frame_shift_ins	c.557_556	p.V186fs	1.000:1.000	superfamily_p53-like transcription factors,HMMPfam_P53	superfamily_p53-like transcription factors,HMMPfam_P53	-	no_errors
XRN2	22803	genome.wustl.edu	37	20	21314348	21314348	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	20	21314348	21314348	G	T	SNP	XRN2	NM_012255.3	human	genbank	58_37c	+1	reviewed	nonsense	c.940	p.E314*	1.000	NULL	HMMPfam_XRN_N	-	no_errors
YAF2	10138	genome.wustl.edu	37	12	42554570	42554570	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	12	42554570	42554570	C	T	SNP	YAF2	NM_005748.3	human	genbank	58_37c	-1	reviewed	missense	c.364	p.D122N	1.000	NULL	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	no_errors
ZFP36L1	677	genome.wustl.edu	37	14	69256881	69256881	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	14	69256881	69256881	C	T	SNP	ZFP36L1	NM_004926.2	human	genbank	58_37c	-1	reviewed	missense	c.386	p.C129Y	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF90229	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMPfam_Tis11B_N,superfamily_SSF90229	-	no_errors
ZNF99	7652	genome.wustl.edu	37	19	22941252	22941252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	19	22941252	22941252	C	T	SNP	ZNF99	NM_001080409.1	human	genbank	58_37c	-1	provisional	missense	c.1186	p.G396S	0.964	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZXDA	7789	genome.wustl.edu	37	X	57935843	57935843	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A084-01A-21W-A019-09	TCGA-A8-A084-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f6f7048-5b7a-4827-af2b-cfecc4a60025	23dc2b83-850f-4ae8-9e10-d7263ef23617	X	57935843	57935843	C	A	SNP	ZXDA	NM_007156.4	human	genbank	58_37c	-1	reviewed	missense	c.1012	p.G338C	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
