Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACVR1B	91	genome.wustl.edu	37	12	52370172	52370172	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	12	52370172	52370172	C	T	SNP	ACVR1B	NM_004302.3	human	genbank	58_37c	+1	reviewed	silent	c.393	p.I131	0.994	NULL	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
AHCY	191	genome.wustl.edu	37	20	32878392	32878392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	20	32878392	32878392	G	A	SNP	AHCY	NM_000687.2	human	genbank	58_37c	-1	reviewed	silent	c.819	p.V273	0.999	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_ADOHCYASE_1,PatternScan_ADOHCYASE_2,superfamily_Formate/glycerate dehydrogenase catalytic domain-like	-	no_errors
AKAP9	10142	genome.wustl.edu	37	7	91652213	91652213	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	7	91652213	91652213	C	G	SNP	AKAP9	NM_005751.4	human	genbank	58_37c	+1	reviewed	silent	c.4038	p.L1346	0.000	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors
ALPK2	115701	genome.wustl.edu	37	18	56191061	56191061	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	18	56191061	56191061	A	C	SNP	ALPK2	NM_052947.3	human	genbank	58_37c	-1	validated	missense	c.5642	p.L1881R	0.993	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
AP1B1	162	genome.wustl.edu	37	22	29727482	29727482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	22	29727482	29727482	G	A	SNP	AP1B1	NM_001127.3	human	genbank	58_37c	-1	reviewed	missense	c.2480	p.T827I	1.000	superfamily_Clathrin adaptor appendage domain	HMMSmart_SM00185,HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Subdomain of clathrin and coatomer appendage domain,superfamily_Clathrin adaptor appendage domain,HMMPfam_B2-adapt-app_C,superfamily_ARM repeat	-	no_errors
BCL6B	255877	genome.wustl.edu	37	17	6929853	6929853	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	17	6929853	6929853	G	T	SNP	BCL6B	NM_181844.3	human	genbank	58_37c	+1	validated	missense	c.967	p.D323Y	0.261	superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BNC1	646	genome.wustl.edu	37	15	83932783	83932783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	15	83932783	83932783	G	A	SNP	BNC1	NM_001717.3	human	genbank	58_37c	-1	reviewed	missense	c.1220	p.A407V	1.000	HMMSmart_ZnF_C2H2	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
BRCA2	675	genome.wustl.edu	37	13	32912296	32912298	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	13	32912296	32912298	TGT	-	DEL	BRCA2	NM_000059.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3804_3806	p.V1270in_frame_del	0.207:0.005:0.021	NULL	HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878	-	no_errors
COL14A1	7373	genome.wustl.edu	37	8	121240977	121240977	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	8	121240977	121240977	A	G	SNP	COL14A1	NM_021110.1	human	genbank	58_37c	+1	validated	silent	c.2166	p.T722	0.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
DISP1	84976	genome.wustl.edu	37	1	223177609	223177609	+	Missense_Mutation	SNP	C	C	T	rs191290309	by1000genomes	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	1	223177609	223177609	C	T	SNP	DISP1	NM_032890.2	human	genbank	58_37c	+1	reviewed	missense	c.2870	p.S957L	0.034	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
ENSG00000245689	0	genome.wustl.edu	37	19	12539825	12539825	+	RNA	SNP	A	A	G	rs57342506	byCluster;byFrequency;by1000genomes	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	19	12539825	12539825	A	G	SNP	ZNF799	NM_001080821.1	human	genbank	58_37c	-1	validated	5_prime_flanking_region	c.-27941	NULL	0.970	-	-	-	no_errors
ENSG00000247093	0	genome.wustl.edu	37	5	140957914	140957914	+	RNA	SNP	T	T	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	5	140957914	140957914	T	A	SNP	DIAPH1	NM_005219.4	human	genbank	58_37c	-1	reviewed	splice_region	c.1045-4	e11-4	0.001	-	-	-	no_errors
FLNA	2316	genome.wustl.edu	37	X	153593204	153593204	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	X	153593204	153593204	C	T	SNP	FLNA	NM_001110556.1	human	genbank	58_37c	-1	reviewed	missense	c.1813	p.D605N	0.993	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin	HMMSmart_SM00557,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_E set domains,superfamily_Calponin-homology domain CH-domain,HMMPfam_Filamin	-	no_errors
FYCO1	79443	genome.wustl.edu	37	3	46008081	46008081	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	3	46008081	46008081	C	T	SNP	FYCO1	NM_024513.2	human	genbank	58_37c	-1	validated	silent	c.2745	p.L915	0.986	NULL	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_FYVE/PHD zinc finger,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
GBP6	163351	genome.wustl.edu	37	1	89849788	89849788	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	1	89849788	89849788	G	A	SNP	GBP6	NM_198460.2	human	genbank	58_37c	+1	validated	silent	c.1605	p.Q535	0.015	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GPR125	166647	genome.wustl.edu	37	4	22440036	22440036	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	4	22440036	22440036	T	A	SNP	GPR125	NM_145290.2	human	genbank	58_37c	-1	validated	missense	c.928	p.T310S	1.000	HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Immunoglobulin	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_7tm_2,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
HERC1	8925	genome.wustl.edu	37	15	63958635	63958635	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	15	63958635	63958635	G	A	SNP	HERC1	NM_003922.3	human	genbank	58_37c	-1	reviewed	missense	c.8243	p.P2748L	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00320,HMMPfam_SPRY,PatternScan_ARGINASE_2,PatternScan_PHOSPHOPANTETHEINE,superfamily_RCC1/BLIP-II,superfamily_WD40 repeat-like,HMMSmart_SM00449,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
IL27RA	9466	genome.wustl.edu	37	19	14143204	14143204	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	19	14143204	14143204	C	G	SNP	IL27RA	NM_004843.2	human	genbank	58_37c	+1	reviewed	missense	c.107	p.A36G	0.000	NULL	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
LOC100130100	0	genome.wustl.edu	37	2	114164297	114164297	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	2	114164297	114164297	G	A	SNP	LOC100130100	XM_001716615.1	human	genbank	58_37c	+1	model	silent	c.201	p.T67	0.210	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
MED23	9439	genome.wustl.edu	37	6	131908938	131908938	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	6	131908938	131908938	G	A	SNP	MED23	NM_004830.2	human	genbank	58_37c	-1	reviewed	nonsense	c.3988	p.R1330*	1.000	NULL	NULL	-	no_errors
OR10A3	26496	genome.wustl.edu	37	11	7960264	7960264	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	11	7960264	7960264	G	A	SNP	OR10A3	NM_001003745.1	human	genbank	58_37c	-1	provisional	silent	c.804	p.P268	0.800	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
P2RY11	5032	genome.wustl.edu	37	19	10224677	10224677	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	19	10224677	10224677	G	T	SNP	P2RY11	NM_002566.4	human	genbank	58_37c	+1	reviewed	missense	c.388	p.G130C	1.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
P2RY4	5030	genome.wustl.edu	37	X	69479051	69479051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	X	69479051	69479051	G	A	SNP	P2RY4	NM_002565.3	human	genbank	58_37c	-1	reviewed	missense	c.424	p.R142W	0.523	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PDZD2	23037	genome.wustl.edu	37	5	32088972	32088972	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	5	32088972	32088972	T	C	SNP	PDZD2	NM_178140.2	human	genbank	58_37c	+1	reviewed	silent	c.5418	p.N1806	0.007	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PTGDR	5729	genome.wustl.edu	37	14	52741544	52741544	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	14	52741544	52741544	G	C	SNP	PTGDR	NM_000953.2	human	genbank	58_37c	+1	reviewed	silent	c.942	p.V314	0.998	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
RAPGEF4	11069	genome.wustl.edu	37	2	173900899	173900900	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	2	173900899	173900900	-	G	INS	RAPGEF4	NM_007023.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.2747_2748	p.E917fs	1.000:1.000	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	"HMMPfam_RA,HMMPfam_DEP,HMMSmart_SM00049,HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_cAMP-binding domain-like,PatternScan_RASGEF,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RC3H1	149041	genome.wustl.edu	37	1	173939653	173939653	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	1	173939653	173939653	C	T	SNP	RC3H1	NM_172071.2	human	genbank	58_37c	-1	validated	missense	c.1324	p.E442K	1.000	superfamily_CCCH zinc finger	HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box,superfamily_CCCH zinc finger	-	no_errors
SEL1L3	23231	genome.wustl.edu	37	4	25848951	25848951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	4	25848951	25848951	C	T	SNP	SEL1L3	NM_015187.3	human	genbank	58_37c	-1	validated	missense	c.698	p.R233Q	0.418	NULL	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like	-	no_errors
SH3PXD2A	9644	genome.wustl.edu	37	10	105363029	105363029	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	10	105363029	105363029	G	T	SNP	SH3PXD2A	NM_014631.2	human	genbank	58_37c	-1	validated	nonsense	c.1862	p.S621*	0.144	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	-	no_errors
SPEG	10290	genome.wustl.edu	37	2	220354586	220354586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	2	220354586	220354586	C	T	SNP	SPEG	NM_005876.4	human	genbank	58_37c	+1	validated	missense	c.8846	p.S2949F	0.990	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
TBC1D3B	414059	genome.wustl.edu	37	17	34493597	34493597	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	17	34493597	34493597	C	T	SNP	TBC1D3B	NM_001001417.5	human	genbank	58_37c	-1	reviewed	silent	c.1428	p.Q476	0.127	NULL	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	-	no_errors
TRPC3	7222	genome.wustl.edu	37	4	122853579	122853579	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	4	122853579	122853579	G	A	SNP	TRPC3	NM_001130698.1	human	genbank	58_37c	-1	validated	silent	c.834	p.H278	0.989	HMMPfam_TRP_2	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans,HMMPfam_TRP_2	-	no_errors
UGT2B7	7364	genome.wustl.edu	37	4	69973882	69973882	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	4	69973882	69973882	C	T	SNP	UGT2B7	NM_001074.2	human	genbank	58_37c	+1	validated	silent	c.1152	p.I384	1.000	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
ZSCAN5C	649137	genome.wustl.edu	37	19	56720191	56720191	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A08B-01A-11W-A019-09	TCGA-A8-A08B-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	267a951b-29b7-4849-9ea7-d2205838fcc7	ae64a42d-572d-46be-8392-f04ec3ab5bf9	19	56720191	56720191	A	G	SNP	ZSCAN5C	ENST00000376267	human	ensembl	58_37c	+1	known	silent	c.1113	p.L371	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
